genome.fa.s4.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  136  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44284789--44284858	5	14.2	5	83	8	90	35	0	1	62	1.04
44285031--44285074	15	2.8	16	83	16	56	77	2	15	4	1.04
44285468--44285561	33	2.8	33	85	9	104	47	1	15	35	1.53
44286027--44286112	21	4.0	22	77	8	88	18	20	25	34	1.96
44287830--44287903	25	3.0	25	78	7	78	35	18	25	20	1.96
44287799--44287956	50	3.2	50	72	9	119	34	18	24	22	1.96
44287838--44287951	25	4.6	25	83	4	115	35	19	24	20	1.95
44292518--44292551	13	2.6	13	90	0	50	50	2	0	47	1.16
44293563--44293756	95	2.0	96	98	1	381	36	22	15	24	1.94
44294385--44294743	177	2.0	178	99	0	711	34	13	7	44	1.72
44295114--44295147	13	2.6	13	90	0	50	50	2	0	47	1.16
44301517--44301556	21	1.9	21	89	0	62	77	0	17	5	0.94
44304891--44304915	13	1.9	13	100	0	50	48	0	0	52	1.00
44307718--44307764	25	1.9	24	82	4	58	40	21	23	14	1.90
44307733--44307788	24	2.3	25	81	9	71	37	23	25	14	1.92
44307744--44307794	24	2.1	24	88	0	75	37	21	23	17	1.94
44307752--44307805	24	2.2	24	83	3	63	40	24	20	14	1.90
44307867--44307914	25	2.0	24	88	12	71	43	20	22	12	1.86
44307638--44307944	150	2.0	150	91	1	490	39	20	20	19	1.93
44316159--44316211	19	2.9	18	74	17	56	52	5	7	33	1.53
44316254--44316362	51	2.1	51	86	6	150	43	0	32	24	1.55
44317607--44317649	18	2.3	19	84	15	54	60	2	6	30	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44318197--44318340	42	3.4	43	84	3	166	35	20	20	22	1.96
44318680--44318729	21	2.4	21	89	0	73	6	38	16	40	1.73
44318697--44318736	21	1.9	21	89	0	62	10	45	12	32	1.75
44320796--44321297	114	4.4	114	85	4	577	26	23	23	26	2.00
44325461--44325504	19	2.3	18	81	11	52	61	2	0	36	1.09
44325468--44325520	19	2.8	19	88	5	72	58	0	0	41	0.98
44325477--44325521	8	5.1	9	82	17	51	55	0	0	44	0.99
44325561--44325586	3	8.7	3	100	0	52	30	0	0	69	0.89
44325658--44325709	22	2.4	22	73	0	59	38	7	3	50	1.50
44326808--44326847	20	2.0	20	85	0	53	37	0	5	57	1.21
44327196--44327243	24	1.9	24	91	8	78	31	2	0	66	1.03
44327216--44327249	17	2.0	17	94	0	59	38	0	0	61	0.96
44329191--44329233	13	3.1	14	84	12	54	60	0	0	39	0.97
44334743--44334847	37	2.8	37	81	5	122	40	18	4	37	1.71
44343052--44343101	26	1.9	26	91	4	75	56	0	0	44	0.99
44345624--44345726	49	2.1	49	90	0	161	31	9	10	48	1.70
44356973--44357010	9	4.2	9	96	0	67	55	28	13	2	1.51
44369042--44369085	5	8.6	5	80	5	52	38	0	18	43	1.50
44369523--44369586	26	2.5	26	92	2	112	20	23	20	35	1.96
44369582--44369634	24	2.2	24	83	6	63	18	24	22	33	1.97
44374739--44374779	17	2.4	17	83	0	55	41	7	4	46	1.53
44382477--44382550	10	7.2	10	71	10	51	37	1	1	59	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44382523--44382670	73	2.0	74	98	1	289	40	14	10	33	1.81
44382734--44382765	16	2.0	16	93	0	55	65	0	3	31	1.08
44388736--44388775	19	2.1	19	90	4	62	70	5	5	20	1.26
44390781--44390871	46	2.0	46	97	0	173	19	19	4	56	1.59
44392503--44392606	42	2.5	43	86	9	151	42	16	24	17	1.88
44392497--44392617	21	5.8	21	67	3	64	43	16	21	18	1.87
44396425--44396649	123	1.8	124	93	0	389	42	7	6	43	1.58
44422300--44422346	24	2.0	24	86	0	67	31	6	21	40	1.78
44429523--44429562	6	6.7	6	94	0	53	10	0	52	37	1.35
44429523--44429562	12	3.3	12	89	0	62	10	0	52	37	1.35
44448064--44448145	23	3.5	23	69	12	76	29	17	15	37	1.91
44448036--44448244	25	8.5	26	66	15	106	25	15	14	44	1.85
44448017--44448220	98	2.1	96	88	3	293	25	15	15	43	1.86
44448017--44448220	48	4.2	48	89	3	293	25	15	15	43	1.86
44448912--44448936	13	1.9	13	100	0	50	20	0	16	64	1.30
44453355--44453422	33	2.1	33	94	5	120	42	32	5	19	1.75
44461127--44461160	9	3.7	9	88	7	50	26	44	23	5	1.76
44476345--44476411	25	2.7	25	95	0	116	26	26	19	26	1.99
44477218--44477266	15	3.3	15	81	18	66	32	10	0	57	1.32
44477219--44477277	29	2.1	27	84	15	75	32	10	0	57	1.32
44481672--44481742	36	2.0	36	97	0	133	29	22	9	38	1.86
44484472--44484650	85	2.1	86	96	3	335	30	3	5	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44487009--44487118	21	5.2	21	67	4	78	40	16	26	17	1.90
44486979--44487123	42	3.5	42	80	0	155	40	17	24	17	1.91
44487110--44487178	20	3.4	20	91	2	102	53	15	13	17	1.73
44496137--44496191	28	1.9	29	82	10	69	36	1	0	61	1.06
44496151--44496196	14	3.3	15	82	11	62	30	0	0	69	0.89
44496152--44496198	22	2.1	22	84	7	60	27	0	0	72	0.85
44499597--44499665	29	2.4	27	79	15	75	8	65	1	24	1.30
44499805--44499838	6	5.8	6	89	3	52	26	2	70	0	1.01
44499805--44499838	18	1.9	17	94	5	59	26	2	70	0	1.01
44499875--44499943	21	3.3	21	75	18	63	40	5	0	53	1.25
44499875--44499918	20	2.2	20	84	15	56	43	6	0	50	1.29
44502029--44502058	4	7.5	4	100	0	60	26	0	23	50	1.50
44514382--44514493	55	2.0	55	100	0	224	22	16	26	33	1.96
44517206--44517466	28	9.6	28	67	23	159	38	2	4	54	1.34
44517209--44517466	81	3.2	81	100	0	516	37	2	4	55	1.34
44518436--44518615	100	1.8	100	85	4	256	29	5	8	56	1.51
44522371--44522401	2	15.5	2	100	0	62	0	48	0	51	1.00
44539854--44539904	18	2.8	18	80	14	59	31	0	3	64	1.11
44539882--44539963	10	8.2	10	73	10	53	31	3	2	62	1.26
44539915--44539966	20	2.6	21	81	9	72	36	3	1	57	1.28
44539925--44540009	10	8.8	10	73	19	58	36	4	2	56	1.33
44548604--44548670	33	2.0	33	100	0	134	35	14	19	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44553447--44553485	17	2.2	18	90	4	62	74	0	25	0	0.82
44555459--44555500	13	3.3	12	83	16	50	71	0	21	7	1.09
44564605--44564657	3	18.3	3	81	14	67	30	0	1	67	1.01
44569005--44569044	20	2.0	20	90	0	62	32	27	12	27	1.93
44569901--44569971	35	2.0	35	100	0	142	42	16	21	19	1.89
44576874--44577148	50	5.5	50	69	7	209	29	21	25	24	1.99
44576913--44577182	50	5.4	50	70	3	220	29	20	25	24	1.99
44576866--44577156	100	2.9	100	95	1	512	29	20	24	24	1.99
44581816--44581860	23	2.0	23	91	8	74	28	6	26	37	1.82
44586749--44586789	21	2.0	21	85	4	57	46	4	7	41	1.53
44594948--44594977	12	2.5	12	100	0	60	60	0	13	26	1.34
44603756--44603863	54	2.0	54	96	3	200	55	10	5	28	1.56
44611592--44611634	12	3.5	12	75	6	50	55	4	4	34	1.41
44617301--44617348	21	2.2	22	77	3	53	31	4	6	58	1.42
44619630--44620266	108	6.0	106	87	6	854	39	14	16	30	1.88
44619630--44620266	222	3.0	209	85	8	882	39	14	16	30	1.88
44620694--44620760	29	2.3	29	77	10	75	29	2	8	58	1.44
44620827--44620896	32	2.2	32	80	5	81	65	2	4	27	1.25
44621396--44621600	76	2.6	79	81	11	276	28	14	13	43	1.83
44621774--44621808	18	2.0	17	88	5	52	0	14	2	82	0.77
44623567--44623597	9	3.4	9	90	0	53	25	12	22	38	1.90
44623651--44623687	9	4.1	9	89	0	56	48	13	8	29	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44624911--44624946	19	1.9	19	88	5	56	66	5	5	22	1.34
44630312--44630338	14	1.9	14	100	0	54	40	7	7	44	1.60
44636621--44636711	42	2.2	42	78	7	98	21	28	30	18	1.97
44636856--44636890	10	3.2	11	88	12	54	17	37	0	45	1.48
44636873--44636934	22	2.8	22	87	7	81	32	30	0	37	1.58
44636912--44636992	40	2.0	40	95	0	144	32	23	1	43	1.62
44637103--44637139	14	2.8	14	88	8	51	59	0	0	40	0.97
44637110--44637155	18	2.6	17	93	6	74	56	0	0	43	0.99
44637427--44637473	11	4.2	11	91	2	76	17	34	0	48	1.47
44637439--44637489	22	2.3	22	86	6	68	23	33	0	43	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163