genome.fa.s4.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  53  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16982523--16982574	23	2.3	23	89	0	77	42	23	7	26	1.81
16984942--16985031	27	3.3	27	85	3	128	47	23	12	16	1.80
16998209--16998548	78	4.4	78	83	4	404	34	14	12	38	1.84
16998611--16998830	84	2.6	84	83	5	259	29	13	12	44	1.81
17005071--17005108	20	1.9	20	89	10	60	60	5	0	34	1.19
17011408--17011434	7	3.9	7	100	0	54	29	0	55	14	1.40
17013936--17014000	34	1.9	34	96	0	121	29	21	15	33	1.94
17015523--17015557	14	2.4	15	90	4	54	45	0	0	54	0.99
17017270--17017326	10	5.9	10	80	15	75	38	1	0	59	1.08
17017269--17017342	28	2.7	27	85	8	89	39	1	0	59	1.06
17017296--17017347	16	3.1	16	82	15	61	42	0	0	57	0.98
17017476--17017514	21	1.9	21	94	5	71	30	25	10	33	1.89
17019435--17019471	15	2.5	15	90	0	56	45	8	2	43	1.47
17019444--17019473	15	2.0	15	100	0	60	40	6	6	46	1.56
17020064--17020106	21	2.0	21	100	0	86	48	4	23	23	1.69
17023727--17024155	230	1.9	227	86	3	610	32	18	18	30	1.95
17024213--17024259	14	3.1	15	82	8	60	17	46	0	36	1.48
17034469--17034627	35	4.5	35	86	1	212	39	27	12	20	1.89
17047720--17048011	27	10.6	27	76	6	219	29	25	12	32	1.93
17047720--17048011	54	5.3	54	79	6	259	29	25	12	32	1.93
17047829--17047890	32	1.9	32	86	0	88	30	27	11	30	1.91
17047771--17047944	86	2.0	86	87	2	251	28	27	12	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17047751--17048011	113	2.4	113	81	4	300	28	24	12	34	1.92
17054513--17054539	7	3.9	7	100	0	54	74	0	25	0	0.83
17057104--17057152	20	2.5	20	81	15	66	8	24	10	57	1.59
17057417--17057540	50	2.5	50	82	0	140	19	28	25	27	1.99
17060663--17060861	30	6.7	30	76	5	116	23	21	15	40	1.91
17060693--17060912	30	7.4	29	73	9	106	20	23	15	40	1.91
17060686--17060853	89	1.9	89	84	7	225	22	21	16	40	1.91
17060840--17060915	29	2.6	29	87	2	116	19	28	11	39	1.87
17060667--17060949	119	2.4	119	83	2	365	22	23	15	38	1.92
17072898--17073192	50	5.9	50	88	0	392	22	30	20	26	1.98
17072849--17073192	100	3.5	100	83	2	397	23	29	20	27	1.99
17072859--17073280	150	2.8	148	82	5	447	23	28	19	27	1.99
17077331--17077361	14	2.2	14	94	0	53	48	12	0	38	1.42
17079200--17079230	14	2.2	14	94	0	53	48	12	0	38	1.42
17081972--17082001	5	6.0	5	92	0	51	16	0	20	63	1.31
17089840--17089869	3	10.0	3	100	0	60	33	0	0	66	0.92
17092713--17092755	18	2.4	19	76	11	54	51	6	6	34	1.56
17094239--17094367	11	12.4	11	73	20	82	58	0	3	37	1.17
17094262--17094334	10	7.3	10	76	15	71	65	0	1	32	1.01
17094246--17094385	51	2.7	51	86	4	201	60	0	2	37	1.12
17098177--17098216	3	14.3	3	80	15	50	65	0	35	0	0.93
17098403--17098473	23	3.0	22	80	10	79	15	9	4	70	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17098559--17098591	16	1.9	18	88	11	52	33	0	0	66	0.92
17103416--17103485	25	2.8	25	82	4	79	21	21	22	34	1.97
17105266--17105290	8	3.1	8	100	0	50	64	0	24	12	1.27
17107682--17107711	16	1.9	16	93	6	53	30	0	20	50	1.49
17112294--17112323	8	3.8	8	90	0	51	13	0	3	83	0.77
17114648--17114794	36	4.1	36	86	0	186	34	10	19	34	1.87
17114648--17114775	18	7.1	18	69	10	91	34	9	19	36	1.84
17114725--17114791	18	3.7	18	76	7	64	38	14	17	28	1.90
17115241--17115292	27	1.9	27	88	0	77	32	21	17	28	1.96
17126082--17126118	18	2.1	18	94	0	65	51	8	21	18	1.72
17130623--17130675	11	4.6	11	76	15	54	60	5	5	28	1.42
17130755--17130784	3	10.0	3	100	0	60	66	0	0	33	0.92
17132294--17132659	100	3.7	99	87	2	473	23	21	23	32	1.98
17132294--17132653	50	7.2	50	72	5	251	23	20	23	32	1.98
17132294--17132659	200	1.8	200	87	0	552	23	21	23	32	1.98
17132636--17132682	23	2.0	23	91	0	76	17	25	19	38	1.92
17135153--17135186	15	2.3	15	90	5	52	11	0	5	82	0.83
17139907--17139959	11	4.6	11	76	15	54	60	5	5	28	1.42
17140042--17140083	3	14.0	3	100	0	84	66	0	0	33	0.92
17144950--17144993	23	1.9	22	82	17	54	36	27	0	36	1.57
17145130--17145277	50	3.0	49	81	4	188	29	30	18	20	1.97
17145089--17145282	101	1.9	99	83	9	250	31	28	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17151611--17151654	20	2.1	21	84	12	56	15	4	4	75	1.14
17159313--17159346	16	2.2	15	89	5	50	55	2	0	41	1.15
17164636--17164692	16	3.8	16	70	13	57	22	26	21	29	1.99
17167545--17167577	17	1.9	17	93	0	57	75	6	0	18	1.00
17181061--17181097	17	2.2	17	90	0	56	75	5	2	16	1.10
17181092--17181132	21	2.0	21	85	0	55	56	9	9	24	1.62
17190862--17191930	104	10.2	104	97	0	1971	30	29	20	20	1.97
17190862--17191930	209	5.1	208	97	1	1971	30	29	20	20	1.97
17190862--17191930	313	3.4	313	98	0	2027	30	29	20	20	1.97
17194246--17194303	23	2.5	23	78	13	66	68	6	6	17	1.34
17211783--17211810	6	4.7	6	100	0	56	67	0	0	32	0.91
17212178--17212214	13	3.1	12	92	7	58	75	0	8	16	1.02
17217425--17217464	21	1.9	21	84	0	53	22	25	27	25	2.00
17223876--17223922	20	2.3	20	77	0	58	8	25	25	40	1.84
17228069--17228116	12	3.9	12	88	2	69	2	12	0	85	0.69
17228070--17228116	24	2.0	24	91	0	76	2	12	0	85	0.70
17228073--17228124	24	2.2	24	82	6	61	3	15	1	78	0.98
17228608--17228665	28	2.1	27	84	9	73	41	0	3	55	1.17
17228608--17228663	29	2.0	27	82	6	67	41	0	3	55	1.17
17235189--17235219	12	2.5	13	94	5	55	12	9	0	77	0.99
17247766--17247804	12	3.2	12	85	0	51	20	23	5	51	1.67
17248004--17248239	50	4.6	50	77	7	174	23	28	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17261563--17261595	17	1.9	17	93	0	57	15	15	15	54	1.71
17264239--17264283	18	2.4	19	81	11	56	66	0	26	6	1.16
17272161--17272324	87	1.9	86	86	3	231	25	16	23	35	1.95
17272705--17272748	19	2.3	19	84	7	54	50	6	15	27	1.70
17273936--17274064	40	3.2	40	85	3	170	34	17	27	20	1.95
17288222--17288320	44	2.2	44	96	0	180	24	28	21	26	1.99
17294850--17294994	56	2.6	57	82	6	181	43	4	20	31	1.72
17294952--17295034	41	2.0	42	88	2	123	49	2	22	25	1.62
17300567--17300707	57	2.5	57	90	3	216	41	5	21	30	1.76
17300667--17300747	43	1.9	41	87	5	117	53	2	22	22	1.58
17306703--17306736	7	4.7	7	85	7	50	11	0	0	88	0.52
17306703--17306738	15	2.4	15	90	9	56	13	0	0	86	0.58
17306711--17306735	13	1.9	13	100	0	50	12	0	0	88	0.53
17306954--17306988	18	1.9	18	94	0	61	20	0	20	60	1.37
17307228--17307436	106	2.0	106	94	0	364	28	19	19	33	1.96
17311998--17312022	12	2.1	12	100	0	50	40	40	20	0	1.52
17318807--17319511	84	8.4	84	94	1	1193	34	24	20	20	1.96
17321059--17321092	7	4.7	7	85	7	50	11	0	0	88	0.52
17321059--17321094	15	2.4	15	90	9	56	13	0	0	86	0.58
17321067--17321091	13	1.9	13	100	0	50	12	0	0	88	0.53
17321310--17321344	18	1.9	18	94	0	61	20	0	20	60	1.37
17325797--17325830	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17329453--17329970	132	3.9	132	92	1	815	25	23	20	30	1.99
17329784--17329968	44	4.2	44	63	10	108	25	24	21	28	1.99
17329466--17329970	265	1.9	263	91	1	823	25	23	20	30	1.99
17334386--17335630	620	2.0	621	96	0	2285	24	25	15	33	1.95
17345011--17345213	98	2.1	98	90	1	318	36	23	10	29	1.88
17345602--17345629	13	2.2	13	100	0	56	53	0	14	32	1.41
17357943--17357997	24	2.3	24	96	0	101	43	3	20	32	1.69
17375034--17375101	23	3.0	23	88	0	100	32	25	22	20	1.98
17375293--17375323	11	2.8	11	100	0	62	45	16	9	29	1.79
17375331--17375369	18	2.2	17	86	13	53	43	20	2	33	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163