genome.fa.s4.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  52  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16686020--16686415	213	1.9	214	91	0	650	42	15	15	26	1.87
16686194--16686745	253	2.2	253	90	1	883	38	15	17	28	1.91
16687433--16687676	122	2.0	122	89	1	373	33	20	15	30	1.94
16689586--16689868	42	6.7	43	87	3	342	26	17	27	27	1.98
16693072--16693229	37	4.7	32	69	16	113	49	2	4	43	1.36
16693178--16693232	15	3.6	16	72	16	53	52	0	3	43	1.18
16693175--16693245	24	3.0	23	73	17	65	50	1	2	45	1.25
16695812--16695863	12	3.4	17	68	26	53	59	7	9	23	1.54
16704247--16704335	31	3.0	29	80	8	72	52	8	8	29	1.63
16705040--16705079	19	2.1	19	85	0	53	20	7	5	67	1.34
16705021--16705073	21	2.7	20	83	11	65	24	3	1	69	1.15
16712936--16712966	16	1.9	16	93	0	53	45	6	3	45	1.45
16722883--16722976	48	2.0	48	95	0	170	52	9	1	37	1.41
16733623--16733683	31	2.0	31	81	12	72	19	1	4	73	1.10
16733632--16733680	17	2.8	17	87	3	62	14	2	6	77	1.05
16733637--16733686	17	2.9	17	87	3	64	14	2	6	78	1.03
16733637--16733702	20	3.2	20	80	4	78	16	4	4	74	1.16
16736149--16736174	3	8.7	3	100	0	52	30	0	0	69	0.89
16737902--16738196	146	2.0	146	99	0	581	26	19	20	33	1.96
16741475--16741528	26	2.2	23	87	9	72	29	1	0	68	1.00
16741576--16741609	7	4.9	7	100	0	68	55	0	0	44	0.99
16742970--16743085	40	3.1	40	58	25	90	32	14	15	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16742914--16743115	71	2.8	71	100	0	404	34	12	15	36	1.86
16752735--16752778	22	2.1	22	83	8	56	36	15	9	38	1.80
16759425--16759454	9	3.2	9	95	4	51	83	0	3	13	0.77
16760304--16760599	45	6.7	45	71	14	215	27	24	21	27	1.99
16760304--16760599	89	3.4	89	73	9	268	27	24	21	27	1.99
16760634--16761310	44	15.4	44	78	6	674	30	25	15	29	1.96
16760634--16761307	176	3.8	176	85	5	821	30	25	15	29	1.96
16762177--16762225	26	1.9	26	88	12	75	61	8	14	16	1.56
16763633--16763667	18	1.9	18	88	0	52	20	51	14	14	1.76
16776347--16776407	30	2.1	29	84	9	79	63	6	4	24	1.38
16777399--16777433	18	1.9	18	88	0	52	57	5	11	25	1.56
16784435--16784487	24	2.2	25	86	3	72	26	22	7	43	1.80
16786543--16786567	3	8.3	3	100	0	50	68	0	32	0	0.90
16786775--16786815	16	2.5	16	88	4	55	75	0	24	0	0.80
16788070--16788390	89	3.6	89	84	0	399	32	26	19	21	1.97
16788529--16788631	45	2.3	45	83	6	129	32	17	23	27	1.97
16791644--16791669	6	4.3	6	100	0	52	19	19	0	61	1.35
16793984--16794032	12	4.1	12	81	0	53	65	6	4	24	1.33
16794880--16794927	19	2.6	19	81	12	57	8	0	35	56	1.30
16796328--16796379	26	2.2	24	86	13	72	55	7	0	36	1.29
16800805--16800838	17	1.9	18	94	5	61	73	2	11	11	1.20
16802027--16802052	11	2.4	11	100	0	52	38	7	0	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16805132--16805360	68	3.4	68	95	1	397	34	16	23	25	1.95
16810521--16810697	29	6.1	29	88	0	264	28	16	22	32	1.96
16810675--16810717	20	2.2	20	100	0	86	34	20	13	30	1.92
16810724--16811009	28	10.2	28	78	4	263	27	19	20	31	1.97
16814158--16814206	20	2.4	20	83	10	64	57	2	0	40	1.10
16814158--16814200	10	4.3	10	82	8	52	58	2	0	39	1.11
16815150--16815205	27	2.1	27	96	0	103	30	7	23	39	1.81
16817148--16817311	84	2.0	84	90	0	256	25	12	27	34	1.92
16820566--16820602	16	2.3	16	90	0	56	32	27	2	37	1.71
16831268--16831330	3	22.0	3	73	15	53	4	30	0	65	1.13
16831265--16831330	17	3.9	17	80	7	80	4	30	0	65	1.13
16831276--16831331	20	3.0	20	79	12	73	5	30	0	64	1.16
16831274--16831330	11	5.1	11	77	12	53	3	31	0	64	1.10
16840212--16840253	22	1.9	22	85	9	59	40	0	0	59	0.97
16844055--16844093	20	2.0	19	85	14	53	20	25	2	51	1.60
16847851--16847942	43	2.1	43	82	4	105	36	28	14	20	1.91
16849235--16849262	12	2.3	12	100	0	56	50	10	7	32	1.64
16852919--16852958	21	1.9	21	89	0	62	42	5	5	47	1.47
16853446--16853498	7	7.4	7	74	4	52	35	33	0	30	1.58
16853443--16853498	14	3.9	14	88	4	85	35	35	0	28	1.58
16853697--16853742	7	6.4	7	80	5	56	32	45	2	19	1.62
16853698--16853745	22	2.2	22	88	7	71	33	47	2	16	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16853710--16853766	14	3.9	14	75	11	53	35	45	0	19	1.50
16853715--16853781	28	2.3	29	82	2	82	35	43	0	20	1.53
16853712--16853774	21	3.0	20	80	13	56	36	44	0	19	1.51
16853761--16853795	15	2.4	14	86	9	52	40	37	0	22	1.55
16853991--16854036	7	6.4	7	80	5	56	32	45	2	19	1.62
16853992--16854039	22	2.2	22	88	7	71	33	47	2	16	1.58
16854004--16854060	14	3.9	14	75	11	53	35	45	0	19	1.50
16854009--16854075	28	2.3	29	82	2	82	35	43	0	20	1.53
16854006--16854068	21	3.0	20	80	13	56	36	44	0	19	1.51
16854055--16854089	15	2.4	14	86	9	52	40	37	0	22	1.55
16853262--16854087	294	2.7	305	89	7	1270	41	27	2	28	1.68
16864060--16864091	3	10.7	3	100	0	64	68	0	0	31	0.90
16869409--16869469	30	2.0	31	87	3	88	37	0	40	21	1.53
16869518--16869554	9	4.1	9	89	0	56	29	8	13	48	1.71
16870046--16870082	17	2.1	18	85	14	51	54	13	0	32	1.40
16872646--16872750	26	4.1	24	81	11	86	62	9	4	22	1.44
16873686--16873712	13	2.1	13	100	0	54	77	0	7	14	0.97
16874145--16874184	21	2.0	19	90	9	62	12	0	17	70	1.18
16875219--16875305	25	3.5	25	73	16	81	24	26	21	27	1.99
16878684--16878726	14	3.1	14	78	15	54	48	0	2	48	1.14
16884033--16884089	24	2.4	24	96	0	105	21	15	19	43	1.87
16889984--16890124	61	2.3	61	85	1	194	33	15	24	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16890793--16890999	43	4.8	43	88	4	303	31	29	17	21	1.96
16891369--16891532	43	3.8	43	87	4	235	31	29	17	21	1.96
16891369--16891564	43	4.6	42	85	6	211	33	29	15	21	1.94
16894134--16894201	29	2.3	30	82	2	75	55	7	7	29	1.54
16896843--16896890	14	3.3	15	80	8	55	33	37	0	29	1.58
16896832--16896907	22	3.5	21	73	10	55	34	39	0	26	1.57
16897144--16897176	16	2.1	16	88	11	50	57	0	0	42	0.98
16897193--16897236	7	6.3	7	79	10	54	47	36	0	15	1.46
16897193--16897236	13	3.2	13	83	9	52	47	36	0	15	1.46
16897193--16897234	21	2.0	20	95	4	75	50	35	0	14	1.43
16897526--16898120	114	4.9	114	73	14	528	25	28	20	25	1.99
16897645--16897892	73	3.4	73	86	1	343	25	26	20	27	1.99
16897718--16898455	187	3.9	187	74	6	670	24	27	21	27	1.99
16897531--16898006	261	1.8	261	92	0	801	25	28	20	25	1.99
16898020--16898266	73	3.4	73	90	0	404	24	26	20	27	1.99
16897906--16898453	260	2.1	260	91	0	882	24	27	20	27	1.99
16898166--16898380	114	1.9	114	89	1	333	24	26	21	28	1.99
16898280--16898453	73	2.4	73	85	5	235	23	27	20	29	1.99
16904656--16904727	28	2.6	28	81	0	90	20	18	15	45	1.85
16904903--16905098	51	3.7	51	71	10	115	24	29	12	34	1.92
16904853--16905219	109	3.4	109	82	2	425	25	28	10	35	1.89
16905613--16905716	27	3.9	27	78	5	102	23	13	28	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16914170--16914200	15	2.0	16	93	6	55	25	9	6	58	1.54
16920335--16920465	57	2.3	57	83	0	154	32	18	22	26	1.97
16920474--16920530	28	2.0	28	83	6	71	26	19	22	31	1.98
16929885--16930126	118	2.0	119	85	5	330	24	23	14	36	1.93
16952350--16952397	25	1.9	25	100	0	96	22	0	16	60	1.36
16953194--16953225	16	2.0	16	100	0	64	25	18	18	37	1.94
16958572--16958614	22	2.0	22	90	4	70	62	0	0	37	0.95
16971557--16975593	580	7.0	576	91	1	6426	35	16	19	28	1.93
16976796--16976843	25	2.0	25	84	15	66	37	18	0	43	1.51
16981103--16981154	25	2.1	25	88	0	77	30	13	38	17	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163