genome.fa.s4.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  34  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11139567--11139612	19	2.4	18	89	7	65	26	4	2	67	1.21
11147274--11147439	90	1.8	90	98	0	323	27	27	12	32	1.92
11171282--11171337	24	2.3	24	90	0	94	44	35	3	16	1.65
11173252--11173297	22	2.1	22	100	0	92	54	0	23	21	1.45
11176813--11176865	10	4.9	11	73	13	56	39	1	0	58	1.09
11178024--11178254	102	2.3	102	93	0	390	31	29	19	19	1.97
11178170--11178251	27	2.8	27	87	10	101	31	30	21	15	1.95
11182520--11182821	149	2.0	150	94	0	534	26	23	12	36	1.91
11185763--11185909	33	4.4	33	72	18	108	31	28	20	19	1.97
11191939--11191977	19	2.2	19	90	9	64	43	0	35	20	1.52
11191970--11192306	186	1.8	183	87	5	509	36	0	37	25	1.61
11192256--11192317	30	2.0	31	81	9	74	37	0	40	22	1.54
11192295--11192332	20	1.9	20	84	10	51	36	0	36	26	1.57
11194705--11194751	17	2.8	17	80	6	51	65	0	2	31	1.04
11195160--11195200	16	2.6	16	85	14	66	24	0	4	70	1.06
11195164--11195193	8	3.8	8	100	0	60	23	0	0	76	0.78
11202512--11202536	13	1.9	13	100	0	50	48	16	8	28	1.74
11211298--11211741	171	2.6	169	90	2	687	41	13	12	32	1.82
11227093--11227151	26	2.3	26	81	0	73	61	8	5	25	1.46
11227643--11227671	10	2.7	11	89	10	51	75	0	6	17	1.01
11228608--11228637	15	2.0	15	93	0	51	23	6	13	56	1.60
11228956--11229827	44	19.3	44	69	14	415	29	21	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11229204--11229840	181	3.5	181	89	3	858	29	22	17	31	1.96
11229084--11229736	89	7.3	86	74	12	487	29	22	18	30	1.97
11234750--11234805	27	2.1	27	83	6	69	60	1	0	37	1.07
11235110--11235148	20	1.9	21	89	5	62	23	0	17	58	1.38
11239226--11239281	27	2.1	27	83	6	69	60	1	0	37	1.07
11241393--11242009	171	3.6	171	93	1	1008	41	14	12	30	1.83
11241889--11241932	18	2.5	18	81	3	54	40	9	13	36	1.76
11262480--11262512	16	2.1	16	88	5	50	3	18	12	66	1.36
11265166--11265244	26	3.1	26	81	1	97	59	10	6	24	1.53
11266296--11266328	11	2.8	12	86	9	50	81	0	12	6	0.85
11267162--11267810	44	14.5	43	71	12	287	29	21	18	31	1.96
11267162--11267808	88	7.2	88	72	11	402	29	21	18	31	1.97
11267316--11267783	182	2.6	181	83	8	519	28	22	16	32	1.96
11276673--11276712	11	3.1	14	76	23	52	22	22	5	50	1.68
11278172--11278223	20	2.7	19	72	13	52	42	0	3	53	1.19
11283424--11283467	18	2.5	18	81	3	54	40	9	13	36	1.76
11286930--11287591	44	14.8	43	69	12	270	29	20	18	31	1.96
11287090--11287564	182	2.6	179	81	9	495	30	21	17	31	1.96
11295790--11295829	11	3.1	14	76	23	52	22	22	5	50	1.68
11298353--11298396	18	2.5	18	81	3	54	40	9	13	36	1.76
11298198--11299941	171	10.2	171	99	0	3461	40	12	14	31	1.84
11298524--11298567	18	2.5	18	81	3	54	40	9	13	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11298695--11298738	18	2.5	18	81	3	54	40	9	13	36	1.76
11298866--11298909	18	2.5	18	81	3	54	40	9	13	36	1.76
11299037--11299080	18	2.5	18	81	3	54	40	9	13	36	1.76
11299208--11299251	18	2.5	18	81	3	54	40	9	13	36	1.76
11299379--11299422	18	2.5	18	81	3	54	40	9	13	36	1.76
11299550--11299593	18	2.5	18	81	3	54	40	9	13	36	1.76
11299721--11299764	18	2.5	18	81	3	54	40	9	13	36	1.76
11299892--11299935	18	2.5	18	81	3	54	40	9	13	36	1.76
11303202--11303240	21	1.9	21	89	5	62	69	0	2	28	1.02
11310581--11310620	20	2.0	20	100	0	80	25	20	0	55	1.44
11310672--11310704	15	2.2	15	100	0	66	39	6	6	48	1.53
11310692--11310753	22	2.7	22	80	9	63	35	11	3	50	1.55
11310785--11310888	47	2.3	43	83	6	127	28	5	5	59	1.44
11318481--11318519	18	2.2	18	85	0	51	20	25	15	38	1.92
11323866--11323919	15	3.6	14	83	14	63	22	1	1	74	1.02
11324063--11324135	3	24.3	3	71	10	51	27	4	6	61	1.40
11324063--11324112	18	2.6	19	81	12	57	24	6	6	64	1.39
11324102--11324140	12	3.2	12	88	3	60	33	0	10	56	1.33
11324160--11324221	15	4.4	14	80	10	54	8	1	8	82	0.91
11324169--11324226	21	2.7	21	89	2	80	10	0	8	81	0.89
11333908--11334480	286	2.0	286	94	0	995	29	19	15	35	1.93
11340219--11340280	32	1.9	32	93	0	106	25	27	24	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11340279--11340320	21	2.0	21	100	0	84	42	9	4	42	1.58
11342723--11343043	129	2.5	129	89	1	464	29	20	19	30	1.97
11342891--11343214	175	1.9	175	91	0	540	30	21	18	30	1.97
11343054--11343343	129	2.2	129	90	0	445	29	22	17	30	1.97
11342787--11343522	304	2.4	304	92	0	1238	28	21	18	31	1.97
11343221--11344328	175	6.3	175	98	0	2072	29	19	18	32	1.96
11344361--11344921	88	6.4	88	95	0	942	24	25	23	26	2.00
11346002--11346048	21	2.2	21	92	0	76	25	36	10	27	1.89
11347042--11347096	9	6.3	9	87	8	78	14	0	10	74	1.07
11347042--11347096	26	2.1	26	93	0	92	14	0	10	74	1.07
11347042--11347095	17	3.2	17	87	7	83	14	0	11	74	1.08
11348360--11348414	27	2.0	27	96	0	101	60	3	16	20	1.51
11349716--11349764	19	2.5	20	80	6	57	42	12	18	26	1.85
11350696--11350720	8	3.1	8	100	0	50	72	12	16	0	1.13
11354437--11354461	13	1.9	13	100	0	50	60	32	0	8	1.26
11357897--11357950	3	17.7	3	96	3	99	66	1	0	31	1.02
11359148--11359212	32	2.1	32	94	2	114	30	9	10	49	1.69
11359749--11359782	12	2.6	14	86	13	54	76	5	17	0	0.98
11359778--11359820	13	3.4	13	90	3	70	69	20	6	2	1.23
11359778--11359819	12	3.4	12	96	3	75	69	21	7	2	1.25
11366285--11366310	4	6.5	4	100	0	52	23	0	0	76	0.78
11366322--11366386	32	2.1	32	94	2	114	30	9	13	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11370622--11370697	3	24.3	3	74	10	55	28	6	1	63	1.28
11370622--11370681	18	3.3	18	88	0	75	30	3	1	65	1.19
11370622--11370697	18	4.6	17	77	12	61	28	6	1	63	1.28
11372688--11372734	19	2.5	19	86	6	60	25	21	10	42	1.85
11375733--11375788	9	6.0	9	78	14	51	83	8	1	5	0.85
11375732--11375787	23	2.4	23	79	11	69	83	7	1	7	0.86
11375733--11375787	13	4.2	13	75	9	58	85	7	1	5	0.80
11382129--11382193	18	3.7	17	74	13	60	32	30	20	16	1.95
11388298--11388326	13	2.1	14	93	6	51	58	0	0	41	0.98
11388299--11388327	9	3.3	9	95	4	51	55	0	0	44	0.99
11397776--11397854	39	2.0	39	97	0	149	40	18	15	25	1.90
11400107--11400191	43	2.0	43	92	0	143	22	25	1	50	1.56
11400658--11400682	8	3.1	8	100	0	50	48	28	12	12	1.76
11401376--11401536	80	2.0	80	90	7	256	32	14	0	52	1.42
11402587--11402655	36	2.0	35	88	5	104	17	4	0	78	0.91
11402585--11402654	27	2.6	26	81	18	74	17	4	0	78	0.90
11402617--11402661	14	3.1	14	87	9	63	15	6	0	77	0.96
11404577--11404626	25	2.0	25	84	3	66	36	6	0	58	1.23
11415685--11415717	11	3.0	11	100	0	66	27	9	27	36	1.87
11425570--11425637	34	2.0	34	85	5	93	20	26	22	30	1.98
11425914--11425965	26	2.0	26	100	0	104	34	7	30	26	1.85
11443332--11443388	30	1.9	30	85	0	78	24	31	28	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11444460--11444502	18	2.4	17	77	11	50	20	0	4	74	1.00
11460644--11460689	23	2.0	23	86	0	65	45	13	17	23	1.83
11465216--11465246	16	1.9	16	93	0	53	61	0	0	38	0.96
11466829--11466926	48	2.0	48	100	0	196	37	6	14	41	1.70
11471116--11471357	50	4.8	50	79	7	213	26	27	19	27	1.99
11474088--11474153	34	1.9	34	87	6	98	24	18	25	31	1.97
11474935--11475019	29	3.0	28	79	5	98	27	11	3	57	1.50
11478993--11479063	20	3.5	20	94	0	106	25	26	0	47	1.52
11486719--11486752	15	2.1	17	89	10	54	58	0	5	35	1.22
11487231--11487274	2	22.0	2	95	0	79	50	2	0	47	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163