genome.fa.s4.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  147  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48436770--48436806	18	2.1	18	89	0	56	54	8	5	32	1.53
48441687--48441749	18	3.6	18	75	12	51	65	1	4	28	1.22
48441725--48441768	21	2.2	20	83	4	52	63	0	2	34	1.07
48443788--48443830	3	14.3	3	100	0	86	67	0	0	32	0.91
48444994--48445030	2	18.5	2	94	0	65	0	0	45	54	1.00
48451831--48451882	3	17.7	3	96	4	97	67	0	0	32	0.91
48452068--48452309	80	3.0	80	100	0	484	33	11	22	32	1.89
48459303--48459335	15	2.1	16	88	5	50	12	3	3	81	0.91
48461536--48461668	68	2.0	67	82	5	160	46	18	12	23	1.82
48462642--48462765	46	2.7	46	85	0	185	39	3	8	49	1.49
48463328--48463356	6	4.8	6	100	0	58	48	0	0	51	1.00
48464351--48464405	24	2.3	22	77	17	56	43	1	0	54	1.10
48467583--48467612	12	2.5	12	94	0	51	60	0	0	40	0.97
48469707--48469745	19	2.1	19	85	9	53	10	10	10	69	1.38
48471019--48471077	23	2.6	23	100	0	118	23	8	5	62	1.43
48478317--48478341	12	2.1	12	100	0	50	40	0	0	60	0.97
48496798--48496853	29	1.9	29	85	0	76	32	19	12	35	1.89
48497085--48497147	31	2.1	31	82	5	76	42	7	12	36	1.72
48499154--48499354	99	2.0	100	99	0	395	41	0	11	45	1.48
48501598--48501625	13	2.2	13	100	0	56	0	14	0	85	0.59
48502736--48502774	20	2.0	20	89	0	60	25	30	28	15	1.96
48504637--48504683	10	4.8	10	76	5	51	63	2	2	31	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48504623--48504683	19	3.3	18	84	8	63	65	3	1	29	1.18
48511814--48511849	8	4.5	8	85	0	54	83	2	13	0	0.76
48515339--48515397	30	2.0	30	86	0	82	37	13	11	37	1.82
48521294--48521327	2	16.5	2	93	6	59	50	0	2	47	1.16
48525978--48526095	41	3.1	41	63	25	114	18	8	15	57	1.63
48525947--48526110	71	2.3	71	98	0	319	17	8	15	58	1.61
48526144--48526194	12	4.2	12	75	12	50	37	15	13	33	1.87
48527735--48527768	5	6.4	5	87	12	50	64	0	0	35	0.94
48527724--48527768	11	4.0	11	94	2	72	60	2	0	37	1.09
48527735--48527782	16	3.0	16	81	6	53	60	2	2	35	1.20
48530998--48531034	15	2.4	16	86	13	51	48	10	8	32	1.67
48531197--48531234	19	2.1	19	85	14	53	39	2	5	52	1.38
48532443--48532468	2	13.0	2	100	0	52	50	0	0	50	1.00
48534309--48534372	33	2.0	32	84	6	85	51	9	0	39	1.34
48542811--48542871	25	2.4	25	72	0	59	19	14	40	24	1.89
48543159--48543191	15	2.3	15	89	5	50	36	9	0	54	1.32
48547251--48547326	31	2.5	31	93	0	125	47	14	7	30	1.73
48559393--48559435	23	2.0	22	86	9	61	30	13	2	53	1.53
48560008--48560032	10	2.5	10	100	0	50	0	24	0	76	0.80
48564577--48564623	16	2.9	16	72	15	51	29	0	2	68	1.02
48565604--48565667	30	2.1	30	88	0	92	51	4	20	23	1.66
48567427--48567614	93	2.0	93	96	2	351	29	8	13	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48568860--48568888	14	2.0	15	93	6	51	48	0	10	41	1.37
48568882--48568939	30	1.9	31	85	3	82	58	5	13	22	1.55
48570423--48570473	25	2.1	24	85	3	66	13	13	0	72	1.12
48571967--48572008	20	2.0	20	86	4	57	2	11	14	71	1.24
48575288--48575315	2	14.0	2	100	0	56	50	0	0	50	1.00
48578088--48578137	25	2.0	25	88	0	73	54	12	0	34	1.38
48582993--48583026	15	2.2	16	90	10	54	79	0	8	11	0.94
48590704--48590835	31	4.3	31	65	11	81	44	12	19	22	1.85
48590706--48590935	93	2.5	93	95	0	415	43	11	20	24	1.84
48590781--48590932	31	4.9	31	67	10	105	43	10	19	26	1.83
48590875--48590991	31	3.9	30	67	18	82	43	8	18	29	1.80
48591655--48591689	17	2.1	17	88	0	52	45	0	5	48	1.26
48596619--48596645	10	2.7	10	100	0	54	88	0	0	11	0.50
48597245--48597308	31	2.0	32	82	14	80	39	10	9	40	1.73
48601124--48601339	90	2.4	89	80	6	213	36	13	9	41	1.76
48601457--48601552	9	10.4	9	70	12	70	65	3	2	29	1.19
48601511--48601552	19	2.3	19	80	15	52	69	2	2	26	1.13
48601521--48601562	18	2.3	19	88	12	61	66	4	2	26	1.23
48601509--48601564	18	3.1	19	78	14	57	66	3	3	26	1.25
48601751--48601794	19	2.2	20	84	4	54	27	9	0	63	1.24
48601778--48601839	29	2.1	29	88	5	90	32	3	3	61	1.28
48601807--48601925	20	6.2	20	71	9	70	33	1	3	61	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48601865--48601913	19	2.5	20	86	3	73	44	0	0	55	0.99
48601996--48602208	92	2.3	90	84	5	268	35	11	20	33	1.88
48601998--48602239	92	2.7	91	82	6	251	35	11	19	33	1.88
48603139--48603222	30	2.7	32	80	7	102	33	9	4	52	1.55
48603992--48604033	21	2.0	21	85	0	57	73	4	9	11	1.22
48604948--48605073	41	3.2	40	73	10	125	26	15	22	36	1.93
48604949--48605051	37	2.7	38	78	6	109	26	16	23	33	1.95
48619022--48619175	73	2.1	73	89	4	231	36	5	27	30	1.80
48620039--48620114	18	4.3	18	71	21	63	51	6	38	3	1.47
48620049--48620099	24	2.1	24	88	0	75	50	5	41	1	1.37
48620049--48620121	12	6.1	12	77	0	65	49	5	42	2	1.40
48621852--48621902	25	2.0	25	100	0	102	37	11	11	39	1.79
48627629--48627654	11	2.4	11	100	0	52	38	7	0	53	1.30
48629089--48629127	16	2.4	16	86	0	60	20	2	20	56	1.54
48630296--48630352	23	2.5	23	77	8	71	50	0	1	47	1.11
48630304--48630358	24	2.3	23	81	6	65	52	0	1	45	1.11
48632915--48632943	6	5.0	6	91	8	51	34	0	0	65	0.93
48632915--48632943	11	2.5	12	94	5	51	34	0	0	65	0.93
48635978--48636314	168	2.0	169	99	0	667	40	7	13	39	1.71
48636855--48636922	3	22.7	3	100	0	136	33	0	0	66	0.92
48643372--48643438	27	2.5	27	80	0	89	25	20	28	25	1.99
48646203--48646277	27	2.7	27	78	12	80	30	24	13	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48646239--48646302	27	2.4	26	85	15	78	28	26	14	31	1.95
48646418--48646516	50	2.0	50	81	0	117	28	20	14	37	1.91
48657089--48657302	105	2.0	105	98	0	410	28	18	24	28	1.98
48667694--48667928	107	2.3	101	82	11	280	29	16	17	37	1.91
48668330--48668354	13	1.9	13	100	0	50	16	8	4	72	1.24
48669462--48669702	115	2.2	113	85	9	300	29	17	16	36	1.92
48669533--48669740	108	1.9	111	83	4	271	31	18	17	32	1.94
48671546--48671573	2	14.0	2	100	0	56	50	0	0	50	1.00
48672366--48672416	17	2.9	17	75	16	59	35	1	5	56	1.35
48674152--48674180	2	14.5	2	100	0	58	0	0	48	51	1.00
48678992--48679067	36	2.1	36	100	0	152	30	19	15	34	1.93
48687411--48687447	16	2.3	16	100	0	74	37	5	35	21	1.77
48687427--48687517	46	2.0	46	93	4	159	26	4	30	38	1.76
48687427--48687534	46	2.5	44	85	11	145	28	3	31	36	1.75
48695081--48695105	13	1.9	13	100	0	50	32	8	40	20	1.81
48704051--48704231	61	3.0	61	92	0	299	19	19	16	44	1.86
48708539--48708624	44	2.0	44	90	0	136	24	5	16	53	1.64
48710455--48710531	29	2.5	31	87	4	104	28	12	11	46	1.77
48710685--48710744	27	2.2	26	80	13	68	5	30	1	63	1.25
48710935--48710959	11	2.3	11	100	0	50	0	8	0	92	0.40
48715099--48715132	16	2.1	16	88	5	50	61	0	11	26	1.30
48722829--48722876	22	2.3	20	82	10	53	14	6	6	72	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48726054--48726084	2	15.5	2	100	0	62	51	0	0	48	1.00
48732585--48732701	57	2.1	57	96	0	216	52	25	5	17	1.65
48733130--48733167	6	6.3	6	93	0	58	31	34	13	21	1.91
48734930--48734958	14	2.0	15	93	6	51	37	0	0	62	0.96
48737797--48737992	97	2.0	98	97	3	369	35	17	9	37	1.83
48743578--48743666	27	3.4	27	86	9	114	59	7	2	30	1.38
48748227--48748265	20	1.9	21	89	5	62	46	17	15	20	1.84
48754948--48755148	109	1.8	109	89	4	316	34	18	15	30	1.92
48755476--48755534	3	19.7	3	100	0	118	66	0	0	33	0.92
48756133--48756171	18	2.2	18	90	9	62	79	2	7	10	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163