genome.fa.s4.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  96  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30838403--30838431	14	2.0	15	93	6	51	27	3	6	62	1.37
30838622--30838666	23	2.0	23	81	0	54	42	0	2	55	1.12
30843277--30843711	133	3.2	135	84	6	563	55	14	2	27	1.52
30843555--30843605	24	2.1	25	88	3	77	60	7	3	27	1.42
30843733--30844023	115	2.5	116	82	4	329	58	17	2	21	1.48
30844006--30844072	34	1.9	36	84	6	93	55	8	0	35	1.32
30844496--30844541	23	2.0	23	100	0	92	17	39	30	13	1.87
30844685--30844752	11	6.2	11	78	11	77	19	33	0	47	1.50
30844704--30844768	33	2.0	33	93	0	112	27	29	0	43	1.56
30846604--30846638	18	1.9	18	94	0	61	25	31	8	34	1.86
30847065--30847151	44	2.0	45	90	2	140	37	0	12	49	1.41
30847166--30847270	53	2.0	53	83	3	131	47	25	0	25	1.58
30847212--30847593	23	16.4	23	79	14	428	45	23	1	29	1.63
30847212--30847516	67	4.4	66	83	10	398	45	23	1	29	1.63
30847237--30847596	95	3.8	96	80	11	365	45	23	1	29	1.64
30847212--30847593	118	3.3	117	86	9	498	45	23	1	29	1.63
30850421--30850772	126	2.8	125	85	5	489	33	23	14	28	1.94
30864530--30864832	125	2.4	126	82	7	339	31	20	17	31	1.96
30871696--30871737	21	2.0	22	85	4	59	59	9	0	30	1.29
30885837--30885952	58	2.0	57	89	5	178	31	12	6	48	1.68
30888235--30888395	58	2.8	58	80	1	162	31	21	24	22	1.98
30891590--30891651	30	2.1	30	84	6	81	43	4	3	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30894386--30894430	3	15.0	3	100	0	90	33	0	33	33	1.58
30894752--30894804	13	4.1	13	87	0	79	26	5	24	43	1.76
30906328--30906433	53	2.0	53	98	0	203	13	19	9	57	1.63
30907826--30907867	22	1.9	22	85	0	57	11	2	23	61	1.42
30917135--30917472	51	6.7	52	80	7	340	29	14	25	30	1.95
30917135--30917476	100	3.4	99	85	4	402	29	14	25	30	1.95
30917130--30917483	151	2.3	152	77	8	398	30	14	24	30	1.95
30919833--30919962	25	5.2	25	70	5	84	20	27	21	30	1.98
30921459--30921659	41	4.9	41	80	10	162	28	11	24	35	1.90
30921459--30921628	41	4.2	41	86	5	202	28	12	24	35	1.91
30929478--30929569	25	3.7	25	85	2	105	18	29	19	32	1.96
30929767--30929816	23	2.2	23	100	0	100	28	10	20	42	1.84
30945091--30945641	132	4.2	132	91	1	838	28	18	23	29	1.98
30948093--30948242	75	2.0	75	97	0	282	30	15	19	35	1.92
30949330--30949509	95	1.9	95	94	0	315	42	12	15	29	1.84
30950455--30950634	95	1.9	95	94	0	315	42	12	15	29	1.84
30955312--30955375	31	2.1	31	100	0	128	37	0	9	53	1.34
30966595--30966629	11	3.0	12	91	8	63	74	0	0	25	0.82
30966762--30966822	21	3.1	19	77	11	68	29	3	3	63	1.26
30987519--30987552	17	1.9	18	88	5	52	41	8	8	41	1.67
30989125--30989196	27	2.7	26	79	14	74	15	6	38	38	1.74
31000925--31001100	44	4.0	44	100	0	352	34	6	18	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31002786--31002839	16	3.4	16	89	0	81	33	1	35	29	1.69
31002818--31002908	44	2.0	44	82	2	110	31	5	27	35	1.80
31003073--31003107	18	2.0	17	88	5	52	54	0	0	45	0.99
31008892--31009020	69	1.9	69	88	0	195	40	24	9	25	1.85
31009837--31009882	22	2.0	23	83	4	58	60	28	4	6	1.40
31010372--31010479	36	2.9	37	83	4	137	55	12	26	5	1.58
31017402--31017560	79	2.0	79	84	7	207	41	10	16	31	1.82
31019511--31019560	25	2.0	25	84	7	66	70	4	4	22	1.21
31023233--31023284	23	2.3	23	89	0	86	46	11	1	40	1.51
31023922--31024291	114	3.2	114	82	5	444	24	21	25	28	1.99
31024233--31024332	41	2.4	41	86	0	128	21	21	28	30	1.98
31024265--31024536	114	2.4	113	87	3	368	23	21	27	27	1.99
31024133--31024446	155	2.0	157	86	3	438	22	21	27	27	1.99
31024748--31024843	15	6.5	15	73	10	72	16	1	43	38	1.55
31025321--31025556	109	2.2	109	96	0	427	33	16	12	38	1.86
31025422--31025705	149	1.9	149	94	0	505	30	17	14	37	1.90
31025571--31026031	109	4.2	109	95	0	825	33	16	13	37	1.87
31025298--31025814	258	2.0	258	94	0	899	31	17	13	38	1.88
31028482--31028517	2	18.0	2	100	0	72	0	0	50	50	1.00
31029024--31029339	42	7.7	42	85	7	436	34	20	21	23	1.97
31029024--31029339	123	2.6	125	87	6	445	34	20	21	23	1.97
31029024--31029343	165	2.0	162	86	5	448	34	20	21	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31030178--31030235	28	2.1	28	83	0	71	37	5	10	46	1.60
31033141--31033187	24	2.0	24	84	16	62	51	17	0	31	1.46
31047784--31047839	28	2.0	28	92	0	94	50	25	7	17	1.72
31048763--31048909	33	4.4	32	67	9	96	27	22	17	32	1.96
31053428--31053474	24	1.9	25	83	12	62	42	4	6	46	1.48
31061982--31062038	18	3.1	18	80	7	60	36	1	0	61	1.07
31061982--31062116	38	3.4	38	76	16	157	37	3	1	57	1.26
31061970--31062160	42	4.8	40	73	16	164	36	5	2	55	1.36
31061970--31062176	80	2.5	80	95	3	360	36	5	2	55	1.36
31062062--31062118	18	3.1	18	80	7	60	36	1	0	61	1.07
31062504--31062542	16	2.5	16	87	4	53	38	2	5	53	1.37
31063655--31063694	21	1.9	21	89	0	62	30	27	20	22	1.98
31064610--31064670	10	5.6	11	70	18	56	36	0	1	62	1.05
31064626--31064663	12	3.2	12	85	7	60	26	0	0	73	0.83
31064615--31064668	23	2.4	23	90	3	83	33	0	1	64	1.04
31064613--31064670	22	2.6	21	82	12	71	34	0	1	63	1.04
31073854--31073887	3	11.3	3	87	0	50	32	0	2	64	1.08
31074167--31074198	16	2.0	16	93	0	55	31	12	3	53	1.54
31077920--31077959	20	2.0	20	90	0	62	32	22	12	32	1.91
31086047--31086453	45	9.1	45	72	4	306	31	20	22	25	1.98
31086079--31086414	44	7.6	44	72	2	269	32	19	22	26	1.97
31086047--31086453	89	4.6	89	91	1	620	31	20	22	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31088080--31088116	3	12.3	3	88	0	56	32	0	2	64	1.07
31088396--31088427	16	2.0	16	93	0	55	31	12	3	53	1.54
31090968--31091006	20	2.0	20	89	0	60	35	12	20	30	1.90
31094324--31094374	3	17.0	3	84	8	68	62	0	5	31	1.19
31095347--31095506	44	3.6	44	78	3	187	31	15	23	29	1.95
31095346--31095526	89	2.0	89	93	0	308	31	17	23	27	1.97
31096255--31096750	89	5.6	89	94	0	805	31	19	22	25	1.98
31097749--31097791	10	4.0	10	80	16	50	11	4	9	74	1.20
31098382--31098418	3	12.3	3	88	0	56	32	0	2	64	1.07
31107007--31107063	30	1.9	30	85	0	78	14	22	36	26	1.92
31113952--31113992	16	2.5	16	88	4	55	48	2	2	46	1.28
31115259--31115307	20	2.5	19	81	12	55	75	2	10	12	1.13
31118795--31118884	30	3.0	30	68	9	74	47	2	10	40	1.49
31120571--31120611	12	3.4	12	80	12	57	21	0	2	75	0.92
31120575--31120622	24	2.0	23	84	11	62	27	0	4	68	1.07
31121073--31121204	60	2.2	61	81	5	144	41	14	4	39	1.66
31127200--31127225	13	2.0	13	100	0	52	61	7	0	30	1.24
31142962--31142986	13	1.9	13	100	0	50	32	4	24	40	1.73
31144101--31144221	44	2.8	43	80	14	126	25	18	27	28	1.98
31147667--31147722	21	2.5	22	82	8	69	55	1	1	41	1.21
31147719--31147774	21	2.5	22	82	8	69	41	1	1	55	1.21
31148400--31148424	13	1.9	13	100	0	50	40	36	0	24	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31154953--31154986	13	2.7	13	90	4	52	76	8	5	8	1.15
31156182--31157026	422	2.0	422	100	0	1690	34	19	18	27	1.95
31158006--31158102	42	2.3	42	78	0	104	41	18	25	14	1.89
31175612--31175656	16	2.8	16	82	0	54	44	2	24	28	1.66
31176281--31176310	14	2.1	14	100	0	60	46	6	16	30	1.73
31179759--31179823	29	2.2	30	83	2	78	58	6	3	32	1.38
31182464--31182489	4	6.5	4	100	0	52	73	0	0	26	0.84
31193639--31193673	18	2.0	17	88	5	52	45	0	0	54	0.99
31193819--31193928	45	2.6	43	80	8	120	32	28	5	33	1.80
31193909--31193960	16	3.2	16	91	0	77	36	34	0	28	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163