genome.fa.s4.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  91  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29295286--29295657	127	2.9	128	77	2	408	34	16	11	37	1.85
29295622--29295699	35	2.2	36	81	2	86	30	15	14	39	1.87
29295236--29295667	129	3.4	128	76	4	429	34	15	11	38	1.84
29295660--29295937	130	2.1	130	88	1	405	29	20	14	34	1.93
29300533--29300582	6	8.0	6	79	16	57	0	20	0	80	0.72
29306802--29306829	12	2.3	12	100	0	56	17	7	0	75	1.03
29308136--29308194	17	3.4	17	78	2	64	28	0	5	66	1.13
29323178--29323220	21	2.0	21	82	8	52	48	6	0	44	1.29
29339960--29340018	16	3.8	15	74	12	57	15	25	0	59	1.36
29340262--29340365	52	2.0	52	100	0	208	38	9	26	25	1.86
29342089--29342436	118	3.0	118	93	3	593	31	21	12	34	1.91
29349291--29349330	21	2.0	20	85	5	53	42	0	2	55	1.13
29349897--29349943	22	2.1	21	85	14	60	53	10	0	36	1.36
29351975--29352012	17	2.2	18	85	4	51	39	21	2	36	1.67
29358459--29358533	38	2.0	36	82	12	89	42	25	5	26	1.76
29361799--29361888	44	2.0	45	97	2	173	30	15	15	38	1.89
29368586--29368659	28	2.6	28	91	0	103	25	22	27	24	2.00
29369068--29369255	27	7.0	27	84	2	209	21	15	19	44	1.87
29369067--29369225	81	2.0	81	87	2	230	23	15	18	42	1.88
29377384--29378355	486	2.0	486	99	0	1935	41	14	16	27	1.87
29379104--29379129	3	8.7	3	100	0	52	65	0	0	34	0.93
29380004--29380055	24	2.2	24	96	0	95	28	23	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29385695--29386371	335	2.0	335	99	0	1347	42	7	10	38	1.68
29388862--29388903	21	2.0	21	86	13	61	38	2	9	50	1.48
29389074--29389114	21	2.0	21	85	0	55	36	0	21	41	1.54
29389136--29389374	115	2.1	112	86	4	329	35	2	7	54	1.42
29392137--29392266	65	2.0	64	89	1	197	23	22	16	38	1.93
29393509--29393729	26	8.5	26	81	0	217	19	13	27	38	1.90
29393509--29393729	52	4.2	52	84	0	271	19	13	27	38	1.90
29393509--29393729	78	2.8	78	78	2	246	19	13	27	38	1.90
29394750--29394855	54	2.0	54	81	3	124	30	26	28	15	1.96
29397811--29398169	179	2.0	180	99	0	711	37	9	8	44	1.68
29410349--29410387	18	2.1	19	90	4	62	74	0	25	0	0.82
29410352--29410390	13	2.9	13	88	11	53	74	0	25	0	0.82
29412433--29412832	126	3.1	126	79	10	367	27	19	21	31	1.97
29412556--29412957	140	2.9	139	79	5	443	28	20	19	31	1.97
29415568--29415598	15	2.1	15	100	0	62	48	12	6	32	1.67
29431145--29431363	40	5.5	40	81	1	242	18	28	19	33	1.95
29431231--29431337	20	5.3	20	66	4	72	16	27	18	37	1.93
29434947--29435004	25	2.3	25	84	0	80	32	15	29	22	1.95
29445503--29445543	1	41.0	1	95	0	64	95	0	0	4	0.28
29446924--29446955	9	3.6	9	95	0	55	56	6	0	37	1.25
29447030--29447075	20	2.2	20	88	11	67	63	4	0	32	1.14
29449192--29449268	4	17.8	4	87	10	91	23	7	0	68	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29449211--29449267	5	12.4	5	90	5	70	21	10	0	68	1.19
29449192--29449268	22	3.5	20	83	13	91	23	7	0	68	1.15
29452669--29453142	237	2.0	237	87	0	689	22	20	26	30	1.98
29467856--29467880	13	1.9	13	100	0	50	16	0	8	76	1.02
29482618--29482651	11	3.1	11	91	0	59	17	32	2	47	1.63
29482614--29482667	22	2.5	22	83	16	69	22	29	1	46	1.62
29483875--29483899	7	3.6	7	100	0	50	28	0	12	60	1.32
29484547--29484589	18	2.4	18	88	0	59	18	27	9	44	1.80
29484843--29484891	21	2.3	21	82	0	53	32	34	20	12	1.90
29485137--29485185	21	2.4	21	96	3	91	42	34	0	22	1.54
29485200--29485239	7	5.9	7	85	14	57	47	0	0	52	1.00
29485833--29485872	7	5.9	7	85	14	57	47	0	0	52	1.00
29485898--29486028	21	6.2	21	94	1	235	44	32	0	23	1.54
29485898--29486028	64	2.1	63	95	1	235	44	32	0	23	1.54
29486024--29486069	20	2.2	21	88	3	67	43	39	0	17	1.49
29486096--29486143	16	2.7	18	71	15	55	52	10	0	37	1.36
29489156--29489551	124	3.2	124	91	1	614	30	21	16	31	1.95
29489597--29489642	21	2.1	22	88	4	67	50	32	0	17	1.47
29492001--29492066	25	2.6	25	83	4	80	31	6	3	59	1.37
29492283--29492330	24	2.0	23	84	4	60	18	6	6	68	1.32
29501865--29505632	950	4.0	949	92	1	6194	33	16	23	26	1.96
29507492--29507892	132	3.0	132	85	0	523	29	18	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29507895--29508055	50	3.2	50	83	0	214	34	22	16	26	1.95
29507927--29508080	50	3.1	49	75	7	157	33	22	19	24	1.97
29509480--29509545	25	2.6	25	80	4	71	30	9	3	57	1.45
29509752--29509809	26	2.3	24	85	11	73	24	8	6	60	1.51
29509766--29509833	26	2.7	24	81	9	64	25	11	7	55	1.61
29517383--29517807	113	3.8	112	81	5	457	25	21	25	27	1.99
29518288--29518314	14	1.9	14	100	0	54	37	14	3	44	1.63
29518557--29518699	21	7.5	21	70	20	116	20	2	39	37	1.67
29518585--29518692	7	14.4	7	69	12	63	20	1	42	35	1.63
29518563--29518724	37	4.3	37	89	4	236	21	2	40	35	1.67
29518563--29518724	75	2.1	76	88	5	240	21	2	40	35	1.67
29518638--29518706	21	3.5	21	67	25	60	20	2	39	37	1.68
29519003--29519632	231	2.7	231	97	0	1188	32	14	17	35	1.90
29529271--29529728	230	2.0	231	91	1	749	34	13	17	34	1.89
29531664--29531703	5	7.6	5	83	10	53	22	0	2	75	0.93
29531859--29531936	18	4.2	18	80	15	95	44	10	1	43	1.46
29531866--29531943	39	2.0	41	92	5	133	42	10	1	46	1.46
29532222--29532558	34	9.9	34	69	18	136	48	17	2	31	1.59
29532223--29532559	16	20.9	16	66	23	131	48	17	2	31	1.59
29532223--29532563	9	39.0	9	68	19	163	48	17	2	31	1.59
29532282--29532381	28	3.7	28	74	14	93	49	19	2	30	1.59
29532347--29532420	21	3.2	21	72	20	76	51	14	0	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29532344--29532438	48	2.0	48	100	0	190	52	14	0	32	1.42
29532417--29532559	43	3.4	42	82	4	164	48	18	2	30	1.60
29532215--29532607	25	15.2	26	71	16	145	48	17	2	32	1.59
29532223--29532568	25	13.9	26	72	15	152	47	17	2	32	1.59
29534397--29534444	21	2.3	21	88	0	78	29	16	52	2	1.56
29535309--29535357	24	2.0	24	100	0	98	32	4	12	51	1.58
29536183--29536610	213	2.0	213	93	1	734	29	20	18	30	1.97
29536644--29536853	105	2.0	105	100	0	420	31	21	21	24	1.98
29539215--29539270	27	2.1	27	100	0	112	50	7	17	25	1.72
29543511--29543568	18	2.8	22	70	20	70	62	3	5	29	1.33
29543518--29543607	19	4.7	19	71	13	67	58	2	4	34	1.30
29543511--29543607	39	2.5	39	81	8	99	57	3	5	34	1.36
29543843--29543881	20	2.0	20	85	10	53	28	2	7	61	1.37
29543881--29543919	20	2.0	19	90	5	60	43	2	0	53	1.14
29544057--29544255	98	2.0	98	83	9	253	39	10	17	32	1.83
29552708--29552746	5	7.6	5	94	5	69	61	0	38	0	0.96
29559362--29559454	39	2.6	33	75	18	96	20	3	51	24	1.62
29559367--29559448	39	2.1	39	93	0	137	19	3	52	24	1.62
29559510--29559618	54	2.0	54	83	0	137	26	3	43	26	1.71
29559647--29559701	26	2.1	26	100	0	110	27	3	30	38	1.74
29561061--29561111	22	2.4	21	84	9	68	27	23	3	45	1.70
29561232--29561364	40	3.4	38	74	9	108	30	24	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29562272--29562309	4	9.0	4	88	11	58	0	26	0	73	0.83
29562273--29562312	9	4.6	9	90	3	64	0	25	0	75	0.81
29562347--29562401	14	3.5	15	82	12	67	27	3	0	69	1.05
29562346--29562414	22	3.0	23	83	12	79	28	4	0	66	1.10
29562347--29562421	26	3.1	24	80	12	75	32	4	0	64	1.12
29562378--29562435	26	2.2	26	81	6	64	39	5	1	53	1.33
29564101--29564558	159	2.9	157	82	4	555	35	16	15	32	1.90
29564636--29564919	82	3.5	82	94	0	471	27	6	16	49	1.70
29566267--29566477	112	1.9	115	90	3	338	46	17	8	27	1.75
29573036--29573079	21	2.2	19	84	8	52	36	0	2	61	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163