genome.fa.s4.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  121  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38945597--38945658	25	2.5	25	75	0	61	29	20	27	22	1.99
38945810--38945851	21	2.0	22	85	4	59	50	11	0	38	1.40
38947532--38947565	17	1.9	18	94	5	61	47	5	11	35	1.65
38955839--38955885	18	2.7	18	76	3	51	42	2	4	51	1.33
38965071--38965099	12	2.4	12	100	0	58	24	24	6	44	1.77
38967049--38967114	34	1.9	34	100	0	132	37	22	3	36	1.70
38969622--38969697	38	2.0	38	100	0	152	26	18	18	36	1.94
38972058--38972091	16	2.1	16	94	0	59	58	0	23	17	1.38
38972172--38972208	2	18.5	2	100	0	74	51	0	48	0	1.00
38972187--38972333	71	2.1	71	100	0	294	51	5	37	5	1.48
38973927--38973964	16	2.4	16	90	0	58	31	0	34	34	1.58
38974133--38974174	15	2.7	16	82	14	52	52	2	0	45	1.13
38974142--38974183	15	2.9	15	82	10	52	52	0	0	47	1.00
38974349--38974396	26	1.9	25	84	16	64	52	2	0	45	1.12
38974424--38974463	20	2.0	20	100	0	80	50	10	20	20	1.76
38977431--38977464	18	1.9	18	88	5	52	44	0	2	52	1.16
38978474--38978518	19	2.5	17	80	13	54	48	13	2	35	1.54
38980406--38980517	34	3.3	34	83	0	116	36	28	9	25	1.88
38984196--38984223	6	4.7	6	100	0	56	14	0	0	85	0.59
38990975--38991020	17	2.8	16	81	12	58	32	2	0	65	1.05
38996050--38996097	25	1.9	25	91	0	78	39	16	22	20	1.92
39001077--39001141	34	1.9	34	81	6	78	72	3	4	20	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39002114--39002161	23	2.1	23	81	11	55	39	12	6	41	1.68
39009137--39009231	46	2.1	46	100	0	190	46	18	15	18	1.84
39016452--39016477	13	2.0	13	100	0	52	23	23	23	30	1.99
39020883--39020925	18	2.4	18	88	0	59	41	44	2	11	1.53
39021033--39021162	27	4.8	27	92	0	188	24	7	23	44	1.79
39021033--39021162	9	14.4	9	84	6	156	24	7	23	44	1.79
39024383--39024436	26	2.1	26	86	3	74	33	3	1	61	1.25
39025706--39025748	21	2.0	22	90	4	70	34	11	20	32	1.89
39027321--39027363	21	2.1	20	82	4	50	32	25	13	27	1.94
39028032--39028325	75	3.9	75	86	1	401	33	21	18	27	1.96
39028030--39028317	150	1.9	150	89	1	443	32	21	18	27	1.96
39029213--39029260	14	3.3	14	75	11	51	47	18	6	27	1.72
39037098--39037125	2	14.0	2	100	0	56	50	50	0	0	1.00
39039408--39040064	327	2.0	328	99	0	1307	31	11	13	42	1.81
39043559--39043607	24	2.1	24	85	11	66	28	8	4	59	1.45
39043827--39043885	31	1.9	31	85	0	82	15	15	13	55	1.69
39046866--39047054	48	3.9	48	90	0	306	31	22	16	29	1.96
39047046--39047126	30	2.6	32	82	3	103	45	16	6	32	1.71
39047045--39047124	32	2.6	31	81	13	94	45	16	6	32	1.72
39050949--39050983	13	2.7	13	100	0	70	48	0	8	42	1.33
39062218--39062285	34	2.0	34	85	0	91	50	14	0	35	1.44
39069057--39069099	11	3.8	11	77	17	52	30	2	4	62	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39069060--39069103	23	1.9	23	90	0	70	31	2	6	59	1.36
39078654--39078714	18	3.4	19	68	23	51	32	8	14	44	1.75
39079754--39079864	40	2.8	39	84	4	143	35	25	24	15	1.94
39079753--39079889	40	3.4	40	81	6	136	37	23	21	16	1.93
39079931--39080075	41	3.5	40	79	7	157	22	24	24	29	1.99
39080238--39080398	87	1.8	89	86	7	240	27	1	26	44	1.65
39080928--39080965	13	2.8	14	88	8	60	57	0	5	36	1.21
39081221--39081388	84	2.0	84	96	0	309	30	34	12	22	1.91
39085601--39085808	43	4.8	42	84	3	227	19	17	31	30	1.95
39091163--39091210	21	2.3	21	96	0	87	29	10	37	22	1.88
39092445--39092861	207	2.0	208	98	0	809	24	12	11	51	1.72
39101989--39102040	24	2.2	24	92	0	86	36	1	9	51	1.46
39110417--39110474	15	3.6	15	78	15	62	41	20	8	29	1.82
39119476--39119533	21	2.8	21	72	0	62	17	29	15	37	1.90
39119430--39119547	42	2.8	43	83	2	132	18	24	14	42	1.88
39121291--39121406	33	3.4	33	80	11	142	31	29	18	19	1.96
39121291--39121485	75	2.7	72	85	4	250	31	28	18	21	1.97
39121533--39121612	27	2.7	27	86	11	97	31	27	23	17	1.97
39121392--39121626	104	2.3	104	90	2	368	29	28	20	21	1.98
39125431--39125473	21	2.0	21	100	0	86	37	13	4	44	1.65
39126856--39127427	128	4.5	127	91	1	843	30	16	22	29	1.96
39126856--39127426	252	2.3	249	89	3	831	30	16	22	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39130905--39131031	21	6.0	21	76	1	128	25	2	24	47	1.64
39130905--39131025	43	2.8	44	82	9	144	26	2	23	47	1.64
39130999--39131052	27	2.0	27	88	0	81	20	1	35	42	1.63
39131011--39131059	14	3.6	14	71	17	50	22	0	34	42	1.54
39132458--39132495	20	1.9	20	84	10	51	55	7	2	34	1.43
39133500--39133543	23	1.9	23	86	9	63	40	2	31	25	1.68
39135743--39135813	29	2.4	29	80	0	70	56	26	1	15	1.48
39137284--39137314	15	2.0	16	93	6	55	41	0	0	58	0.98
39143569--39143624	24	2.3	24	90	0	85	48	7	5	39	1.54
39143580--39143631	24	2.2	24	89	0	77	51	5	3	38	1.44
39152668--39152766	50	2.0	50	87	0	144	34	21	17	27	1.95
39152755--39153011	44	5.7	44	77	7	237	28	18	18	34	1.95
39152867--39153058	51	3.9	51	74	8	180	30	17	15	36	1.91
39152823--39153058	96	2.5	96	89	0	339	29	18	16	35	1.93
39164861--39164904	18	2.5	17	78	10	52	68	2	0	29	1.02
39165856--39165908	26	2.0	26	100	0	106	41	18	22	16	1.90
39170273--39170345	26	2.8	26	83	6	96	15	26	24	34	1.94
39170309--39170393	23	3.6	23	85	3	98	15	28	24	31	1.95
39172223--39172299	35	2.2	35	95	2	138	15	18	3	62	1.47
39174580--39174623	18	2.4	19	80	7	63	72	4	4	18	1.19
39175624--39175680	19	3.0	20	75	10	57	49	5	0	45	1.24
39177897--39177955	27	2.3	27	91	5	95	47	0	8	44	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39178638--39178696	31	1.9	31	89	3	93	20	1	3	74	1.05
39179373--39179412	13	3.1	13	96	0	71	25	7	27	40	1.82
39183079--39183123	12	3.6	12	80	11	54	55	0	8	35	1.31
39188037--39188081	21	2.1	22	84	12	58	44	2	0	53	1.13
39199955--39199999	18	2.5	18	89	7	65	2	17	0	80	0.82
39201693--39201757	31	2.1	32	85	2	87	26	30	0	43	1.55
39202862--39202913	15	3.5	15	94	0	95	19	42	19	19	1.90
39210594--39210634	20	2.2	19	86	8	57	53	0	0	46	1.00
39216725--39216820	39	2.4	39	80	1	93	41	19	5	33	1.74
39216753--39216833	39	2.1	39	83	4	101	38	22	7	32	1.82
39217504--39217642	70	2.0	69	97	1	260	28	25	12	34	1.92
39219939--39219987	14	3.5	14	82	0	62	20	22	28	28	1.98
39219925--39220017	28	3.3	27	77	8	78	24	23	24	26	2.00
39219752--39220135	172	2.2	173	80	5	404	25	21	25	27	1.99
39222197--39222492	152	1.9	152	83	4	382	37	6	20	35	1.77
39222762--39222879	43	2.7	43	76	11	107	20	18	28	32	1.96
39228733--39228792	25	2.6	22	80	19	70	53	0	1	45	1.10
39232561--39232604	19	2.2	19	84	12	52	31	4	4	59	1.38
39232574--39232635	21	2.8	21	83	11	63	33	6	1	58	1.34
39232679--39232712	18	1.9	18	88	5	52	26	2	0	70	1.01
39235474--39235537	13	5.0	13	72	12	53	10	9	1	78	1.04
39235486--39235552	19	3.6	17	75	20	55	11	8	2	76	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39235494--39235552	17	3.3	17	83	9	64	11	8	3	76	1.13
39235663--39235704	14	3.1	13	80	19	50	78	2	2	16	0.96
39242273--39242336	28	2.3	28	94	0	119	43	3	17	35	1.65
39247130--39247230	39	2.5	40	91	1	168	29	31	22	15	1.95
39248782--39248828	17	2.7	18	77	12	53	31	2	10	55	1.46
39256531--39256594	10	6.1	11	75	15	55	42	1	0	56	1.09
39256521--39256584	31	2.0	32	87	3	94	40	1	0	57	1.08
39256576--39256612	19	2.0	18	89	5	56	54	0	0	45	1.00
39269207--39269236	15	1.9	16	93	6	53	36	0	26	36	1.57
39277804--39277988	92	2.0	92	96	0	343	24	28	20	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163