genome.fa.s4.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  139  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45427247--45427272	5	5.2	5	100	0	52	42	19	19	19	1.90
45428886--45429043	43	3.7	43	87	0	208	22	15	27	34	1.95
45429177--45429288	47	2.5	44	81	5	118	23	14	26	35	1.93
45429342--45429367	5	5.2	5	100	0	52	42	19	19	19	1.90
45430391--45430427	9	4.1	9	92	0	65	29	10	13	45	1.77
45430493--45430523	9	3.4	9	90	0	53	38	22	12	25	1.90
45430713--45430778	2	33.0	2	100	0	132	50	0	50	0	1.00
45434342--45434369	6	4.7	6	100	0	56	85	0	0	14	0.59
45435750--45435872	28	4.5	28	84	2	151	34	11	26	28	1.91
45435753--45435872	55	2.2	54	83	5	143	34	10	25	29	1.90
45440017--45440055	11	3.5	11	82	6	51	61	0	2	35	1.10
45440039--45440071	15	2.1	17	88	11	52	60	0	0	39	0.97
45442993--45444347	677	2.0	674	97	1	2588	53	8	9	28	1.63
45467631--45467793	81	2.0	81	96	0	299	34	15	15	33	1.90
45493408--45493435	6	4.7	6	100	0	56	67	0	0	32	0.91
45494635--45494678	18	2.4	18	80	3	52	29	2	6	61	1.34
45498391--45498424	17	1.9	17	88	5	50	47	0	17	35	1.48
45498472--45498708	3	79.0	3	100	0	474	33	0	0	66	0.92
45499358--45499437	21	3.7	22	66	19	60	18	18	23	38	1.93
45499355--45499417	23	2.9	21	70	9	54	19	20	23	36	1.95
45499826--45499876	25	2.0	25	96	0	93	37	5	19	37	1.76
45514168--45514198	9	3.4	9	90	0	53	25	12	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45516710--45516771	24	2.6	24	82	7	72	33	14	27	24	1.94
45516847--45516920	26	2.9	25	82	6	94	37	22	22	16	1.93
45522548--45522578	14	2.2	14	94	0	53	25	6	6	61	1.45
45522609--45522673	30	2.2	30	94	0	112	23	3	13	60	1.48
45528315--45528367	28	2.0	26	88	7	79	20	13	7	58	1.59
45528822--45528858	20	1.9	18	89	10	56	48	0	10	40	1.38
45532517--45532578	25	2.5	25	94	0	106	27	9	20	41	1.84
45532722--45532762	20	2.2	19	91	8	66	31	0	19	48	1.49
45554200--45554966	381	2.0	385	97	1	1461	41	11	15	31	1.83
45557800--45557848	25	1.9	26	91	4	82	40	10	16	32	1.82
45560346--45560394	25	1.9	26	91	4	82	40	10	16	32	1.82
45564567--45564606	21	1.9	21	94	0	71	35	2	0	62	1.09
45564558--45564605	12	4.3	12	72	17	50	37	2	0	60	1.09
45576502--45576552	15	3.1	16	78	21	61	29	1	9	58	1.41
45587229--45587353	42	3.0	42	98	0	241	27	26	24	21	1.99
45589052--45589077	1	26.0	1	100	0	52	0	0	0	100	0.00
45593073--45593143	27	2.6	27	93	4	117	63	0	2	33	1.09
45599309--45599344	17	2.0	18	89	10	56	0	27	0	72	0.85
45599398--45599463	20	3.2	20	85	8	71	21	4	4	69	1.24
45599497--45599546	19	2.6	20	84	6	59	36	8	4	52	1.50
45600236--45600271	18	2.1	17	94	5	63	50	0	0	50	1.00
45601775--45601855	3	26.7	3	76	7	74	64	2	3	29	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45603409--45603459	23	2.2	23	82	6	59	19	3	13	62	1.46
45604511--45604584	32	2.3	32	81	11	80	39	0	0	60	0.97
45615457--45615487	14	2.1	15	94	5	55	29	6	0	64	1.18
45615462--45615494	14	2.4	14	90	5	50	27	6	0	66	1.15
45621635--45621664	15	1.9	16	93	6	53	70	3	0	26	1.03
45621622--45621667	15	2.8	16	81	18	51	63	2	2	32	1.19
45626189--45626271	43	1.9	43	100	0	166	24	19	22	33	1.97
45627542--45627587	20	2.4	19	77	19	51	56	2	6	34	1.37
45628170--45628199	2	15.0	2	100	0	60	50	0	0	50	1.00
45639628--45639657	6	5.0	6	100	0	60	33	0	0	66	0.92
45640706--45640746	19	2.3	18	87	8	57	46	2	2	48	1.28
45644534--45644583	24	2.1	24	84	0	64	42	20	26	12	1.86
45644591--45644625	3	11.7	3	100	0	70	34	0	34	31	1.58
45644705--45644740	3	12.0	3	100	0	72	33	0	33	33	1.58
45644966--45645036	3	23.7	3	91	0	79	35	8	32	23	1.85
45645307--45645349	3	14.3	3	100	0	86	67	0	32	0	0.91
45645856--45645989	65	2.1	65	100	0	268	33	8	11	45	1.72
45647204--45647238	16	2.2	16	89	0	52	68	5	0	25	1.11
45647707--45647761	28	2.0	28	92	0	92	1	29	5	63	1.27
45647735--45647806	38	1.9	37	82	2	90	6	26	8	58	1.53
45654122--45654158	20	1.9	19	89	10	58	45	16	21	16	1.84
45654365--45654389	13	1.9	13	100	0	50	40	48	0	12	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45654492--45654593	9	11.4	9	79	2	98	27	11	22	38	1.89
45654492--45654583	35	2.6	36	92	3	159	27	11	23	36	1.90
45657276--45657371	46	2.1	46	100	0	192	44	12	19	22	1.84
45661594--45661640	21	2.2	21	77	7	51	6	14	4	74	1.17
45663418--45663452	17	2.0	18	88	5	54	31	11	2	54	1.51
45663563--45663598	16	2.3	16	90	4	56	22	2	0	75	0.94
45664083--45664154	36	2.1	36	86	5	103	62	1	2	33	1.18
45669664--45669713	24	2.1	24	100	0	100	40	4	4	52	1.39
45671262--45671296	16	2.2	16	90	10	54	28	5	2	62	1.32
45679478--45679541	30	2.1	32	91	5	105	31	10	7	50	1.66
45692012--45692280	134	2.0	135	99	0	531	38	11	11	39	1.77
45693957--45693993	17	2.1	19	85	10	51	45	0	10	43	1.39
45697142--45697193	6	8.3	6	80	16	52	75	0	3	21	0.97
45697147--45697201	25	2.2	25	84	12	69	70	0	7	21	1.11
45704337--45704403	34	1.9	35	87	3	100	44	14	8	31	1.76
45706518--45706547	14	2.1	14	93	0	51	63	0	13	23	1.29
45712130--45712168	19	2.1	19	100	0	78	25	25	5	43	1.75
45727562--45727612	23	2.2	23	96	0	93	37	0	13	49	1.43
45727571--45727612	13	3.5	13	75	18	54	38	0	11	50	1.40
45730129--45730194	26	2.6	25	81	11	71	37	24	21	16	1.93
45734145--45734189	20	2.2	20	88	7	65	28	0	4	66	1.11
45734202--45734242	19	2.2	19	86	0	55	21	0	4	73	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45735351--45735400	3	17.0	3	91	4	84	64	0	36	0	0.94
45745437--45745467	2	15.5	2	100	0	62	0	51	0	48	1.00
45751316--45751801	254	1.9	254	96	0	900	25	14	26	33	1.94
45760456--45760498	18	2.4	18	88	7	61	53	0	0	46	1.00
45778712--45778772	31	2.0	30	81	12	72	55	6	4	32	1.47
45778707--45778778	32	2.3	31	80	7	74	54	6	4	34	1.47
45779534--45779578	23	1.9	24	86	4	65	51	2	2	44	1.26
45794910--45794953	12	3.7	12	84	0	61	40	22	34	2	1.67
45794910--45794951	18	2.3	18	83	0	66	42	21	33	2	1.66
45797350--45797374	12	2.1	12	100	0	50	24	36	24	16	1.94
45797687--45797728	13	3.3	13	81	18	61	16	0	45	38	1.48
45797687--45797751	25	2.6	25	88	7	89	16	0	43	40	1.49
45801143--45801559	89	4.7	89	76	12	342	29	10	12	47	1.75
45801158--45801538	176	2.1	177	79	9	411	29	10	13	46	1.77
45801157--45801766	89	7.0	88	73	12	305	28	11	14	46	1.78
45802882--45802922	21	2.0	21	85	9	57	41	2	0	56	1.13
45805374--45805414	21	2.0	21	85	9	57	41	2	0	56	1.13
45805458--45805734	136	2.0	137	97	1	529	44	6	7	42	1.58
45809081--45809233	75	2.0	75	94	0	270	36	16	18	27	1.93
45818029--45818080	24	2.2	24	82	6	61	50	3	3	42	1.39
45832639--45832677	18	2.2	17	86	13	53	33	0	20	46	1.51
45832903--45832975	23	3.2	23	90	0	119	26	21	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45833445--45833486	16	2.6	16	88	0	66	40	7	26	26	1.81
45833466--45833558	45	2.1	43	90	9	143	34	4	24	36	1.75
45835219--45835295	38	2.0	38	90	5	120	48	19	16	15	1.82
45838009--45838148	49	2.9	49	91	0	226	25	13	27	32	1.94
45856847--45856966	41	2.9	41	86	0	141	26	19	25	29	1.98
45860740--45860790	25	2.0	26	81	11	61	62	1	11	23	1.39
45863211--45863248	18	2.1	18	90	9	60	0	18	0	81	0.69
45863214--45863246	10	3.4	10	91	4	50	0	12	0	87	0.53
45863214--45863253	11	3.7	11	83	6	55	0	15	0	85	0.61
45863214--45863277	26	2.7	23	83	13	69	4	17	0	78	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163