genome.fa.s4.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  49  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15727641--15727682	4	10.5	4	100	0	84	50	23	0	26	1.50
15734508--15734584	38	2.0	41	84	7	106	77	5	11	5	1.09
15735422--15735454	7	5.0	7	89	10	52	72	0	12	15	1.12
15736676--15736893	100	2.2	100	87	2	312	30	22	21	25	1.99
15736707--15736868	50	3.2	49	74	3	162	32	22	20	24	1.98
15736906--15737148	44	5.5	44	71	13	151	30	20	20	27	1.98
15737039--15737247	46	4.6	46	73	11	189	31	20	21	27	1.97
15737039--15737194	44	3.5	44	78	6	129	31	20	19	28	1.97
15737511--15737543	17	2.0	17	88	5	50	3	6	15	75	1.11
15738306--15738399	9	10.1	9	75	15	57	28	4	1	65	1.18
15738348--15738392	3	14.7	3	95	4	81	31	0	0	68	0.89
15738605--15738798	106	1.8	106	85	7	277	30	17	16	35	1.92
15748854--15748884	11	2.7	12	95	5	55	45	6	0	48	1.28
15752890--15753398	126	4.1	126	76	6	491	28	17	17	36	1.92
15752861--15753225	120	3.0	120	72	10	369	27	18	18	36	1.94
15753461--15753568	34	3.4	33	79	13	127	46	12	0	40	1.42
15753670--15753704	15	2.3	15	90	0	52	57	28	0	14	1.38
15754008--15754042	6	6.0	6	86	6	54	62	0	0	37	0.95
15758100--15758203	49	2.1	49	89	0	154	51	10	4	32	1.57
15767959--15768022	31	2.0	32	93	3	112	23	14	29	32	1.94
15772649--15772912	128	2.1	128	97	0	492	31	20	24	24	1.98
15778628--15778716	28	3.2	27	80	10	99	21	26	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15780499--15780543	15	2.8	16	83	9	56	35	0	4	60	1.17
15780535--15780578	21	2.2	20	83	4	52	18	4	29	47	1.68
15792177--15792252	40	1.9	39	84	7	100	34	22	19	23	1.97
15798930--15798958	8	3.6	8	100	0	58	75	0	0	24	0.80
15799223--15799281	30	1.9	31	86	3	84	22	20	6	50	1.71
15799223--15799289	30	2.2	31	81	5	73	22	17	8	50	1.74
15799043--15799856	408	2.0	407	92	2	1368	27	20	7	45	1.78
15800980--15801131	49	3.0	49	80	5	171	25	13	24	36	1.92
15801005--15801131	50	2.5	49	82	5	146	24	15	24	35	1.94
15806031--15806219	95	2.0	94	95	0	324	28	22	9	39	1.86
15806255--15806303	16	3.1	16	96	0	89	20	34	6	38	1.77
15818751--15818785	15	2.4	15	95	4	63	74	0	25	0	0.82
15830405--15830441	11	3.2	12	85	14	51	21	2	8	67	1.29
15830405--15830436	13	2.6	13	90	9	50	18	3	9	68	1.30
15832029--15832326	148	2.0	149	98	0	580	39	15	4	40	1.67
15837896--15838074	89	2.0	90	98	1	351	49	8	5	36	1.58
15838766--15838854	41	2.2	41	83	2	108	37	22	14	25	1.92
15842455--15842589	59	2.3	59	94	0	234	46	5	2	45	1.39
15846803--15846860	30	1.9	30	89	0	89	75	8	6	8	1.18
15846845--15846884	12	3.3	12	85	0	53	67	10	7	15	1.41
15846874--15846918	21	2.2	21	84	7	58	71	0	26	2	0.98
15847770--15847808	8	5.4	7	85	14	53	71	0	15	12	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15847779--15847817	13	3.0	13	88	7	53	69	0	15	15	1.20
15848016--15848062	23	2.0	23	100	0	94	34	19	17	29	1.94
15851862--15852248	191	2.0	193	94	3	683	34	13	19	32	1.90
15853224--15853281	12	4.8	12	74	18	57	32	12	8	46	1.71
15853207--15853281	36	2.1	37	94	2	134	32	12	9	46	1.73
15860788--15860817	11	2.7	11	100	0	60	43	0	0	56	0.99
15864761--15864812	15	3.5	15	76	5	52	46	1	5	46	1.38
15867083--15867121	8	4.8	8	81	6	51	58	20	12	7	1.58
15867083--15867134	25	2.1	25	96	0	95	59	19	13	7	1.58
15871889--15872031	71	2.0	71	87	2	207	17	22	24	35	1.95
15877747--15877794	7	6.9	7	95	0	78	39	41	4	14	1.65
15879386--15879509	62	2.0	62	93	0	212	34	8	19	37	1.81
15883610--15883930	106	3.0	106	91	1	509	38	11	13	37	1.81
15885238--15885297	19	3.2	19	81	11	79	31	0	3	65	1.09
15885223--15885297	36	2.1	37	87	2	107	29	0	2	68	1.04
15885803--15885829	12	2.2	12	100	0	54	85	0	14	0	0.61
15885830--15886051	111	2.0	108	89	6	340	36	14	15	32	1.88
15886378--15886644	107	2.5	107	88	5	400	26	17	16	38	1.91
15890443--15890529	42	2.1	40	91	4	147	37	18	21	21	1.94
15892776--15892800	13	1.9	13	100	0	50	48	4	0	48	1.20
15895327--15895505	39	4.6	39	82	4	209	42	21	5	30	1.76
15895686--15895795	50	2.2	50	93	0	184	30	30	10	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15904279--15904319	19	2.0	21	86	9	59	53	2	29	14	1.54
15916899--15916958	10	5.9	10	84	11	86	43	8	0	48	1.33
15917330--15917524	97	2.0	97	98	0	381	43	13	23	20	1.87
15919725--15919931	79	2.6	79	83	4	274	28	15	16	40	1.89
15924942--15925045	52	2.0	52	96	3	192	31	17	7	43	1.77
15930868--15930922	17	3.2	17	78	14	58	38	29	20	12	1.89
15930895--15930937	17	2.5	17	88	7	61	27	34	23	13	1.93
15933446--15933470	12	2.1	12	100	0	50	16	0	8	76	1.02
15933433--15933492	21	2.8	21	82	7	59	21	3	5	70	1.22
15933710--15933770	31	1.9	32	83	3	79	65	3	9	21	1.37
15942870--15942940	35	2.0	35	94	0	124	36	8	25	29	1.85
15947993--15948062	35	2.0	35	91	0	113	37	5	24	32	1.79
15949775--15949815	20	2.0	20	86	9	57	17	0	7	75	1.02
15950673--15950724	21	2.5	21	80	0	59	32	44	9	13	1.76
15952731--15952756	13	2.0	13	100	0	52	15	15	0	69	1.20
15957205--15957246	15	2.8	15	77	0	57	35	9	19	35	1.84
15957234--15957276	20	2.2	20	86	0	59	34	6	18	39	1.78
15957207--15957272	30	2.2	30	83	0	78	36	7	21	34	1.82
15969270--15969319	24	2.1	24	100	0	100	16	16	26	42	1.88
15969572--15970326	377	2.0	377	99	0	1501	32	12	19	36	1.89
15977360--15977401	22	2.0	21	86	13	59	76	7	4	11	1.15
15983069--15983185	57	2.0	58	95	1	209	49	14	11	23	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15983186--15983227	22	2.0	22	85	4	59	73	2	0	23	0.94
15983627--15983683	30	1.9	30	82	7	71	52	3	7	36	1.46
15985558--15985769	76	2.8	75	84	2	273	32	25	20	21	1.97
15985558--15985769	75	2.8	77	84	2	268	32	25	20	21	1.97
15985679--15985899	102	2.2	101	90	3	336	31	27	19	21	1.97
15990185--15990695	3	170.3	3	100	0	1022	66	0	0	33	0.92
15991108--15991163	21	2.8	19	82	10	76	37	14	8	39	1.77
15994871--15994917	23	2.0	24	83	8	60	34	17	6	42	1.74
15995144--15995428	76	3.8	75	85	3	392	35	27	17	20	1.94
15995254--15995391	43	3.5	40	72	18	128	34	27	16	21	1.95
15995297--15995424	33	3.6	33	71	17	112	36	28	17	17	1.93
15995403--15995456	27	2.0	28	88	3	83	31	29	20	18	1.96
15997903--15998061	44	3.6	44	81	1	167	29	22	20	27	1.98
15998330--15998451	44	2.8	44	74	10	124	31	23	17	27	1.97
15998625--15998833	44	4.8	43	69	11	129	27	22	19	30	1.98
15999598--15999785	97	1.9	96	90	3	297	46	10	18	25	1.79
16000071--16000128	14	4.5	13	83	12	59	0	13	0	86	0.58
16000070--16000127	22	2.6	22	86	10	82	0	13	0	86	0.58
16004619--16004675	30	1.9	30	82	7	71	52	3	7	36	1.46
16006834--16006858	3	8.3	3	100	0	50	0	32	68	0	0.90
16010777--16011007	115	2.0	116	99	0	455	42	6	17	34	1.74
16013529--16014496	483	2.0	483	100	0	1936	30	17	17	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16021212--16021460	29	8.5	29	77	7	198	24	12	12	51	1.73
16021212--16021473	59	4.5	59	80	3	278	24	12	12	50	1.75
16021212--16021463	117	2.1	117	83	6	305	24	11	12	51	1.73
16021215--16021420	88	2.3	89	77	7	231	23	12	12	51	1.73
16021328--16021493	58	2.9	58	79	9	146	25	13	9	50	1.72
16021934--16021977	20	2.2	20	88	8	63	56	18	6	18	1.62
16023459--16023575	45	2.6	45	86	0	162	21	20	17	40	1.92
16023590--16023716	43	2.8	45	78	5	141	23	19	16	40	1.91
16039701--16039742	17	2.5	17	100	0	84	4	16	11	66	1.40
16039864--16039899	9	4.1	9	89	7	56	75	0	0	25	0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163