genome.fa.s4.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  112  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36140778--36140804	14	1.9	14	100	0	54	51	7	18	22	1.70
36145475--36145501	14	1.9	14	100	0	54	51	7	18	22	1.70
36147435--36147460	3	8.7	3	100	0	52	34	30	34	0	1.58
36150385--36150417	17	1.9	17	93	0	57	24	3	6	66	1.28
36150499--36150988	242	2.0	243	99	0	973	44	8	11	36	1.70
36151833--36151863	15	2.1	15	100	0	62	38	6	32	22	1.80
36156529--36156687	53	3.0	53	100	0	318	32	22	11	33	1.90
36157163--36157255	43	2.2	43	84	3	116	17	24	31	26	1.97
36157656--36157729	36	2.1	36	100	0	148	31	8	25	35	1.85
36162390--36162432	21	2.0	22	86	13	63	44	0	13	41	1.44
36162390--36162433	20	2.1	21	84	12	56	45	0	13	40	1.44
36162472--36162658	64	2.9	64	83	4	171	34	7	17	41	1.77
36162506--36162658	64	2.4	64	87	3	209	33	7	18	40	1.78
36162816--36162904	41	2.2	41	97	0	169	23	17	22	35	1.95
36162816--36162920	41	2.6	41	92	3	158	21	18	24	35	1.96
36166166--36166226	25	2.4	25	97	0	113	34	22	27	14	1.94
36169797--36169835	15	2.6	15	100	0	78	7	33	7	51	1.59
36171463--36171496	15	2.3	15	94	0	59	35	0	8	55	1.31
36171860--36172076	108	2.0	109	98	0	418	40	9	18	32	1.82
36176025--36176287	51	5.3	51	89	6	423	31	14	23	29	1.95
36176025--36176283	95	2.7	95	89	4	383	31	15	23	29	1.95
36176023--36176287	146	1.8	146	95	0	485	31	15	23	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36186515--36186560	3	15.3	3	86	0	65	60	2	4	32	1.28
36189142--36189173	12	2.7	12	95	0	55	34	21	15	28	1.94
36192303--36192370	34	2.0	34	100	0	136	44	8	14	32	1.76
36205073--36205144	30	2.3	32	77	13	78	43	4	6	45	1.50
36206234--36206342	54	2.0	54	100	0	218	40	19	22	18	1.92
36208873--36208915	12	3.6	12	77	22	54	27	4	0	67	1.10
36208863--36208921	24	2.5	24	97	2	111	30	3	0	66	1.08
36214910--36214956	23	2.0	23	100	0	94	36	12	17	34	1.87
36215296--36215576	48	5.9	48	93	0	418	19	16	42	20	1.89
36223623--36223805	91	2.0	92	97	1	350	55	6	4	33	1.45
36223642--36223772	28	4.4	28	70	19	104	56	6	3	33	1.41
36225207--36225305	50	2.0	51	93	2	173	33	18	17	31	1.94
36227255--36227290	13	2.8	13	91	0	63	25	11	25	38	1.88
36229298--36229339	21	2.0	20	86	4	57	69	9	14	7	1.37
36233197--36233242	13	3.1	15	72	15	51	63	0	0	36	0.95
36238400--36238452	3	18.0	3	92	3	90	33	1	0	64	1.05
36242894--36242923	5	5.8	5	96	4	51	0	36	60	3	1.14
36262365--36262389	7	3.6	7	100	0	50	76	0	0	24	0.80
36263102--36263247	41	3.5	41	85	1	202	41	17	25	15	1.89
36263513--36263551	13	3.1	13	88	3	53	38	2	0	58	1.12
36264269--36264299	11	2.7	11	95	5	53	6	19	3	70	1.22
36272229--36272507	132	2.1	132	100	0	558	34	5	12	46	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36273119--36273162	17	2.6	16	82	7	52	31	2	11	54	1.48
36273991--36274028	16	2.4	16	84	16	53	21	0	5	73	1.02
36279264--36279327	13	4.9	13	92	0	110	31	7	23	37	1.83
36282505--36282537	16	2.1	16	88	11	50	57	0	12	30	1.35
36283545--36283587	17	2.6	16	82	7	59	32	0	2	65	1.06
36283558--36283604	22	2.1	22	84	11	60	36	2	2	59	1.21
36284333--36284378	14	3.1	16	76	17	55	60	0	0	39	0.97
36289752--36290059	167	1.8	167	92	0	517	33	21	7	37	1.81
36290051--36290087	7	5.3	7	100	0	74	29	27	0	43	1.55
36295515--36295598	42	2.0	42	85	0	114	23	39	16	20	1.92
36295822--36295863	2	21.0	2	100	0	84	50	0	0	50	1.00
36301095--36301133	18	2.1	19	85	4	53	69	5	0	25	1.09
36301297--36301321	13	1.9	13	100	0	50	84	0	16	0	0.63
36301675--36303046	149	8.9	150	83	8	1487	52	6	10	30	1.61
36302787--36302814	5	5.6	5	100	0	56	78	0	0	21	0.75
36301677--36303046	320	4.4	307	85	6	1787	52	6	10	30	1.61
36303051--36303324	139	2.0	139	94	0	476	38	11	11	38	1.78
36304593--36304942	77	4.5	77	95	2	610	40	10	8	41	1.69
36307835--36308041	39	5.3	38	70	17	111	50	11	4	33	1.57
36307908--36307954	23	2.0	23	84	8	60	59	14	2	23	1.46
36307862--36308046	40	4.7	40	70	18	136	50	10	4	34	1.59
36308275--36308343	3	24.3	3	78	11	58	1	30	0	68	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36308269--36308298	15	2.0	15	100	0	60	6	40	0	53	1.27
36308290--36308336	13	3.7	13	91	2	78	0	23	0	76	0.78
36308294--36308338	16	2.8	16	89	0	72	0	22	0	77	0.76
36308883--36308950	30	2.3	30	80	12	77	27	7	23	41	1.81
36313403--36313470	30	2.3	30	85	12	95	27	8	23	39	1.84
36317404--36317465	29	2.1	28	85	5	79	37	4	12	45	1.64
36317906--36317943	19	2.2	18	86	13	53	55	0	2	42	1.14
36322498--36322568	31	2.3	31	80	7	81	21	12	19	46	1.83
36328586--36328660	3	25.0	3	87	0	105	62	2	2	32	1.23
36328689--36328772	24	3.4	24	69	18	82	59	7	15	17	1.58
36328680--36328779	50	2.0	50	98	1	193	59	8	16	17	1.60
36329309--36329342	17	2.1	16	88	5	50	79	2	0	17	0.86
36330360--36330785	44	9.8	43	68	10	204	29	20	18	31	1.96
36330312--36330613	129	2.3	129	90	0	460	28	21	19	30	1.98
36330448--36330829	44	8.7	46	67	17	136	30	20	18	31	1.96
36330449--36330886	175	2.5	175	92	0	714	29	20	17	31	1.96
36331138--36331273	42	3.2	41	63	20	98	27	21	19	31	1.97
36331054--36331413	87	4.1	87	87	1	463	25	22	21	30	1.99
36331336--36331470	44	3.0	44	71	16	143	22	23	26	26	2.00
36331069--36331470	87	4.6	87	88	1	416	25	22	22	29	1.99
36331310--36331445	44	3.1	43	68	15	116	24	25	23	26	2.00
36337113--36337161	19	2.5	20	80	6	57	42	12	18	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36338641--36338871	109	2.1	108	92	5	385	33	16	17	32	1.92
36339327--36339396	31	2.2	32	85	7	90	57	4	5	32	1.42
36339416--36339462	3	15.3	3	91	4	76	68	2	0	29	1.02
36342583--36342639	30	1.9	30	85	3	80	19	35	0	45	1.50
36355770--36355820	23	2.3	22	83	6	66	27	11	23	37	1.90
36355820--36355856	9	4.1	9	92	0	65	45	13	10	29	1.77
36356070--36356127	30	1.9	30	85	0	80	18	39	0	41	1.51
36363704--36363765	21	2.8	23	86	11	78	54	4	1	38	1.31
36363704--36363767	22	3.0	21	82	13	76	56	4	1	37	1.30
36365729--36365943	108	2.0	109	84	0	279	32	14	13	40	1.85
36369781--36369875	27	3.7	27	75	16	103	29	14	15	40	1.88
36369782--36369873	48	1.9	48	90	0	148	29	15	16	39	1.89
36370612--36370665	22	2.5	21	80	17	65	42	11	12	33	1.79
36372379--36372417	19	2.0	20	85	14	55	61	10	0	28	1.28
36372426--36372466	20	2.0	20	86	9	57	53	4	2	39	1.35
36372808--36372884	22	3.4	22	67	19	68	35	2	25	36	1.70
36372803--36372897	46	2.1	46	100	0	190	33	2	23	41	1.66
36376943--36377039	46	2.1	47	94	3	169	36	2	22	39	1.66
36379111--36379136	2	13.0	2	100	0	52	0	50	0	50	1.00
36380950--36380988	20	2.0	20	84	0	51	38	12	25	23	1.90
36381776--36382019	121	2.0	119	88	3	364	32	18	9	39	1.83
36389703--36389762	30	2.0	30	83	3	75	40	0	38	21	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36393215--36393276	16	4.3	14	75	18	56	72	6	19	1	1.15
36394089--36394227	40	3.5	41	73	8	126	28	15	23	33	1.95
36394102--36394223	37	3.1	38	72	12	113	26	14	22	36	1.93
36398132--36398167	18	2.1	17	89	5	54	5	52	41	0	1.24
36398261--36398406	51	2.9	51	85	4	222	36	3	0	60	1.14
36398364--36398397	17	2.0	17	88	0	50	35	0	0	64	0.94
36398279--36398407	11	12.4	11	71	21	82	37	3	0	58	1.17
36398341--36398416	40	1.9	40	91	0	125	32	2	0	64	1.07
36398259--36398428	51	3.3	52	80	11	199	34	2	0	62	1.10
36402197--36402453	128	2.0	129	99	0	507	35	17	17	29	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163