genome.fa.s4.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  133  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43153939--43154074	50	2.7	49	80	6	137	32	22	25	19	1.97
43154044--43154234	25	7.7	24	69	13	79	38	21	20	19	1.94
43154154--43154211	26	2.2	26	81	0	71	39	24	22	13	1.90
43158092--43158126	18	1.9	18	94	0	61	37	14	0	48	1.44
43169418--43169469	24	2.2	24	89	0	77	55	9	1	32	1.43
43171385--43171436	24	2.2	24	85	0	68	53	9	3	32	1.51
43176868--43177053	100	1.9	100	91	0	309	37	19	15	27	1.92
43181206--43181455	39	6.4	39	100	0	500	45	16	2	36	1.60
43181491--43181545	9	6.1	9	91	0	74	12	38	12	36	1.82
43186384--43186631	123	2.0	123	98	0	478	22	25	20	31	1.98
43190283--43190314	15	2.1	15	94	0	55	71	6	6	15	1.26
43190804--43190883	32	2.5	32	83	4	99	41	27	3	27	1.73
43193529--43193707	46	3.9	46	83	2	225	36	10	24	29	1.88
43193529--43193705	92	1.9	92	86	2	248	36	10	24	28	1.88
43198372--43198400	5	5.8	5	100	0	58	41	0	20	37	1.53
43205200--43205239	21	1.9	21	100	0	80	35	20	5	40	1.74
43206149--43206219	34	2.1	34	100	0	142	39	8	11	40	1.71
43206165--43206219	17	3.2	17	71	19	60	38	9	10	41	1.72
43207354--43207448	31	2.9	31	81	7	100	46	1	11	41	1.47
43207511--43207907	126	3.2	126	87	0	571	36	15	18	29	1.92
43210927--43210957	9	3.6	9	91	8	55	64	0	0	35	0.94
43210978--43211034	25	2.3	24	80	11	71	56	1	1	40	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43210984--43211846	431	2.0	432	99	0	1719	31	14	25	28	1.95
43213462--43213511	22	2.1	25	82	10	61	68	2	8	22	1.26
43213644--43213685	21	2.0	20	86	4	57	52	2	21	23	1.59
43213672--43213700	11	2.7	11	94	5	51	51	0	24	24	1.48
43213891--43213936	18	2.6	18	78	0	56	39	10	23	26	1.88
43216571--43216829	129	2.0	127	78	10	267	24	18	9	47	1.77
43229747--43229783	17	2.2	18	90	9	60	27	0	5	67	1.12
43230112--43230183	29	2.4	29	81	9	83	40	16	18	25	1.91
43236075--43236131	20	2.7	21	72	8	62	54	1	0	43	1.10
43236941--43236994	24	2.2	24	86	0	72	53	5	1	38	1.35
43243821--43243845	12	2.1	12	100	0	50	20	24	32	24	1.98
43248179--43248243	32	2.0	32	85	5	87	40	7	6	46	1.58
43249936--43249985	21	2.4	21	82	0	55	56	12	6	26	1.58
43251956--43252021	29	2.3	29	87	7	98	60	3	4	31	1.32
43251675--43252035	133	2.7	133	85	2	485	50	8	9	31	1.65
43252114--43252467	90	4.0	89	82	5	358	37	16	10	36	1.82
43252567--43252603	16	2.4	16	86	13	51	75	0	2	21	0.92
43266290--43266373	29	2.9	28	70	18	64	50	7	11	30	1.66
43278498--43278528	2	15.5	2	100	0	62	51	0	48	0	1.00
43282762--43282833	35	2.1	35	100	0	144	45	18	19	16	1.85
43284953--43285004	18	2.9	18	80	11	61	53	1	0	44	1.11
43285003--43285028	9	2.9	9	100	0	52	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43292146--43292183	3	12.7	3	100	0	76	65	0	0	34	0.93
43292733--43292763	14	2.2	14	94	0	53	51	0	6	41	1.27
43295381--43295706	154	2.1	155	80	3	368	34	15	11	39	1.83
43304937--43304969	17	2.0	17	88	5	50	42	9	24	24	1.83
43322146--43322245	1	100.0	1	69	0	65	85	6	4	5	0.84
43322146--43322238	27	3.5	26	81	11	93	84	5	4	5	0.85
43322146--43322245	23	4.1	24	78	10	96	85	6	4	5	0.84
43322151--43322245	33	2.8	32	90	7	145	84	6	4	5	0.88
43322148--43322245	8	11.8	8	75	16	83	84	6	4	5	0.86
43322674--43322717	17	2.6	17	89	3	63	79	2	13	4	0.98
43342097--43342202	53	2.0	53	100	0	212	39	28	5	26	1.79
43342894--43342921	5	5.6	5	100	0	56	60	0	17	21	1.36
43345036--43345116	40	2.0	40	100	0	162	22	9	12	55	1.66
43352440--43352502	20	3.0	22	81	11	87	22	1	4	71	1.13
43354152--43354206	26	2.2	26	83	9	69	25	25	3	45	1.70
43359114--43359163	9	5.6	9	97	0	82	40	26	10	24	1.86
43360834--43360881	16	2.9	16	78	6	60	22	0	20	56	1.43
43364938--43365022	43	2.0	43	90	0	134	44	14	11	29	1.80
43366791--43366890	50	2.0	49	94	3	175	23	15	26	36	1.93
43369968--43370011	22	2.0	22	82	8	54	43	11	2	43	1.53
43372082--43372129	19	2.7	18	84	12	57	0	10	6	83	0.81
43374122--43374171	16	3.0	16	79	5	55	70	6	0	24	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43374966--43375015	12	3.9	13	77	12	59	38	0	2	60	1.09
43378073--43378112	20	2.0	20	100	0	80	35	0	0	65	0.93
43378077--43378120	20	2.2	20	87	0	61	31	0	6	61	1.22
43385325--43385349	3	8.3	3	100	0	50	68	0	32	0	0.90
43396106--43396135	15	2.0	15	93	0	51	53	3	0	43	1.17
43415601--43415858	129	2.0	129	100	0	516	27	14	18	39	1.90
43430244--43430280	14	2.4	17	86	13	53	48	0	5	45	1.25
43430666--43430719	24	2.2	26	83	12	69	48	0	0	51	1.00
43442611--43442913	166	1.8	166	90	2	493	46	8	5	38	1.59
43458341--43458383	10	4.2	10	80	16	52	39	0	2	58	1.11
43459497--43459668	87	2.0	88	91	3	287	44	9	5	40	1.62
43461568--43461617	21	2.4	22	75	21	61	56	4	0	40	1.18
43462766--43462824	24	2.5	24	75	10	66	35	20	23	20	1.96
43466089--43466337	124	2.0	125	99	0	491	32	7	8	52	1.58
43471355--43471392	3	12.7	3	100	0	76	31	0	0	68	0.90
43472064--43472247	86	2.1	86	84	0	233	25	26	20	27	1.99
43472042--43472247	43	4.8	43	80	5	184	24	27	19	28	1.99
43472568--43472617	21	2.4	21	89	0	73	4	44	18	34	1.68
43474326--43474495	9	19.7	9	65	17	74	31	2	20	46	1.63
43474324--43474420	25	3.9	24	73	16	90	34	0	19	46	1.50
43474359--43474485	34	3.9	34	72	14	115	29	3	20	46	1.66
43474326--43474429	50	2.0	50	83	7	129	32	0	21	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43474459--43474499	17	2.4	18	80	8	50	31	4	12	51	1.60
43474490--43474519	12	2.5	12	94	0	51	30	6	13	50	1.67
43476840--43477063	105	2.1	107	89	1	344	28	13	14	43	1.83
43476461--43477229	358	2.2	356	89	1	1184	27	15	13	42	1.85
43476840--43477088	105	2.3	105	86	2	300	28	14	15	41	1.86
43477096--43477351	136	1.9	138	85	4	358	25	16	14	44	1.85
43477448--43477513	7	9.1	7	73	5	51	33	43	1	21	1.62
43477532--43477580	15	3.4	15	83	8	57	36	38	2	22	1.66
43477791--43477824	15	2.3	15	90	10	52	32	50	0	17	1.47
43477791--43477824	8	4.6	7	86	13	50	32	50	0	17	1.47
43477847--43477873	14	1.9	14	100	0	54	37	37	0	25	1.57
43477969--43478414	114	3.9	113	80	5	486	29	25	21	23	1.99
43478314--43478487	73	2.4	73	81	7	194	29	26	21	22	1.99
43478387--43478597	115	1.8	115	83	3	282	28	27	21	22	1.99
43479215--43479307	36	2.5	35	80	13	98	44	1	23	31	1.61
43482569--43482605	17	2.1	18	90	5	58	67	0	8	24	1.17
43482563--43482607	17	2.8	16	83	12	56	64	0	6	28	1.19
43491353--43491377	7	3.6	7	100	0	50	16	24	32	28	1.96
43495934--43495973	13	3.1	13	96	0	71	25	27	40	7	1.82
43496819--43496891	31	2.4	31	83	4	94	56	12	6	24	1.60
43498912--43498961	20	2.4	22	80	10	59	60	0	2	38	1.09
43499579--43499773	10	20.7	9	67	17	67	36	3	3	56	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43499654--43499728	19	3.8	20	77	11	75	38	0	2	58	1.12
43499698--43499762	16	3.8	17	70	12	53	36	0	3	60	1.13
43499796--43499980	91	2.1	88	86	3	253	35	18	9	36	1.83
43500583--43500776	10	20.7	9	68	16	74	36	3	3	57	1.32
43500658--43500731	21	3.8	20	77	15	75	37	0	2	59	1.12
43500695--43500765	24	2.8	24	76	8	61	35	0	2	61	1.10
43500799--43501004	91	2.3	88	86	2	277	36	17	9	35	1.82
43501019--43501099	19	4.3	18	73	9	72	66	1	6	25	1.22
43501019--43501116	28	3.5	28	73	14	76	66	1	6	26	1.21
43509972--43510028	27	2.1	27	83	6	71	28	3	1	66	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163