genome.fa.s4.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  153  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50749311--50749336	3	8.7	3	100	0	52	65	0	0	34	0.93
50753550--50753949	159	2.5	159	91	3	617	23	26	11	40	1.87
50753777--50753922	69	2.1	69	81	3	166	23	28	12	36	1.91
50755017--50755067	21	2.4	22	80	6	61	62	15	9	11	1.53
50755445--50755479	3	11.7	3	100	0	70	68	0	0	31	0.90
50756014--50756053	9	4.4	9	87	9	55	37	0	5	57	1.21
50756626--50756677	20	2.6	20	84	0	59	59	0	0	40	0.97
50756644--50756683	20	2.0	20	90	0	62	55	0	0	45	0.99
50757829--50757874	17	2.8	17	83	12	60	50	13	0	36	1.41
50757830--50757871	16	2.6	16	81	7	50	52	11	0	35	1.38
50758541--50758602	30	2.1	30	93	0	106	25	3	12	58	1.50
50767515--50767569	3	18.3	3	88	0	65	41	32	25	0	1.56
50778284--50778348	30	2.1	32	82	5	80	40	1	9	49	1.44
50780173--50780210	1	38.0	1	100	0	76	0	0	0	100	0.00
50781886--50782819	466	2.0	467	99	0	1861	39	11	11	37	1.77
50793850--50793936	42	2.1	42	100	0	174	25	17	20	36	1.94
50796600--50796627	6	4.7	6	100	0	56	17	0	0	82	0.68
50810798--50810888	45	2.0	45	93	0	155	48	9	8	32	1.67
50812382--50812427	24	1.9	24	86	0	65	13	23	26	36	1.91
50814420--50814466	24	1.9	25	86	4	69	61	4	2	31	1.27
50821808--50821840	14	2.4	14	90	10	50	24	3	6	66	1.28
50834692--50834734	18	2.5	17	84	3	59	30	0	4	65	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50834700--50834735	18	2.0	18	94	0	63	30	0	5	63	1.17
50839851--50839904	19	2.8	20	76	18	62	31	1	0	66	1.02
50847678--50847704	3	9.0	3	100	0	54	33	0	0	66	0.92
50847850--50847889	13	3.0	13	85	3	53	30	0	0	70	0.88
50850595--50850637	23	1.9	22	81	13	52	37	4	4	53	1.43
50851119--50851549	214	2.0	215	99	0	855	39	5	7	47	1.55
50854546--50854597	5	10.2	5	83	8	61	59	1	1	36	1.19
50863553--50863591	20	2.0	20	85	10	53	56	2	0	41	1.13
50863542--50863592	20	2.7	19	72	19	52	56	1	0	41	1.10
50869717--50869776	23	2.5	23	81	10	59	51	5	1	41	1.33
50875509--50875535	6	4.5	6	100	0	54	33	14	0	51	1.43
50876505--50876540	15	2.4	15	90	9	56	66	0	0	33	0.92
50876506--50876544	15	2.6	15	80	15	53	64	0	0	35	0.94
50876511--50876544	8	4.6	7	89	10	50	64	0	0	35	0.94
50882188--50882340	73	2.1	73	84	8	197	23	18	17	40	1.91
50889634--50889673	12	3.6	11	90	9	64	35	0	0	65	0.93
50895747--50895782	3	12.0	3	100	0	72	66	0	0	33	0.92
50897223--50897261	6	6.7	6	82	5	53	35	0	2	61	1.10
50919849--50919883	9	3.9	9	100	0	70	42	0	0	57	0.99
50920946--50920985	20	2.0	20	95	0	71	52	0	17	30	1.45
50926088--50926144	24	2.4	22	80	13	60	61	7	0	31	1.23
50933541--50933681	68	2.1	68	93	0	237	34	12	15	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50935478--50935532	16	3.4	16	82	0	65	21	29	5	43	1.75
50938225--50938254	14	2.1	14	100	0	60	6	16	13	63	1.50
50938416--50938485	33	2.1	33	100	0	140	31	8	20	40	1.82
50941914--50942199	142	2.0	143	99	0	565	25	6	10	56	1.58
50943499--50943538	20	2.0	20	100	0	80	70	5	0	25	1.08
50948518--50948552	16	2.2	17	90	10	56	57	0	2	40	1.14
50951994--50952042	25	1.9	26	95	4	91	42	2	28	26	1.66
50952191--50952224	15	2.3	15	89	0	50	76	0	5	17	0.98
50952417--50952464	18	2.8	17	84	12	62	27	6	4	62	1.38
50952472--50952518	20	2.3	20	85	3	58	34	6	2	57	1.36
50952536--50952595	23	2.4	24	86	13	86	20	10	0	70	1.16
50952647--50952685	21	1.9	20	84	5	51	41	2	0	56	1.13
50961771--50961819	20	2.6	18	75	15	53	44	2	0	53	1.12
50969488--50969531	2	22.0	2	100	0	88	50	0	50	0	1.00
50970199--50970247	19	2.5	19	86	3	62	51	12	2	34	1.51
50971050--50971094	21	2.1	21	84	8	56	31	0	0	68	0.89
50971040--50971097	10	5.6	10	76	13	55	31	3	0	65	1.09
50973162--50973218	20	2.8	19	81	7	60	42	0	1	56	1.10
50973162--50973240	19	3.8	21	76	17	67	40	0	1	58	1.06
50973170--50973234	20	3.2	20	74	23	64	36	0	1	61	1.05
50973170--50973242	22	3.5	22	75	14	73	39	0	1	58	1.06
50984005--50984039	2	17.5	2	100	0	70	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50986944--50986971	1	28.0	1	100	0	56	0	0	0	100	0.00
50987972--50988025	22	2.4	23	90	3	83	50	1	3	44	1.30
50987999--50988037	16	2.4	16	86	0	51	46	2	7	43	1.46
50988010--50988040	16	1.9	16	93	0	53	41	0	9	48	1.36
50988043--50988162	59	2.1	59	90	1	197	41	5	9	44	1.58
50991549--50991592	2	22.0	2	95	0	79	47	0	52	0	1.00
50992057--50992085	6	4.8	6	100	0	58	0	31	0	68	0.89
50995415--50995444	2	15.5	2	93	6	53	50	0	0	50	1.00
51010527--51010590	31	2.1	29	82	11	74	42	0	7	50	1.31
51021716--51021753	3	12.7	3	100	0	76	65	0	0	34	0.93
51022095--51022123	6	5.0	6	95	4	51	0	13	0	86	0.58
51029118--51029155	19	2.0	19	94	0	67	36	23	5	34	1.78
51035481--51035528	14	3.4	14	97	0	87	50	14	6	29	1.67
51036145--51036174	15	2.0	15	100	0	60	86	6	6	0	0.70
51043071--51043103	6	5.7	6	89	7	50	66	0	0	33	0.92
51069634--51069666	11	3.1	11	86	4	50	45	0	0	54	0.99
51080334--51080436	51	2.0	51	88	3	154	34	23	16	25	1.95
51080677--51080724	20	2.3	20	78	3	51	25	10	20	43	1.83
51084215--51084372	73	2.1	75	96	3	302	41	10	4	44	1.58
51085636--51085673	16	2.3	17	86	13	53	44	2	0	52	1.14
51085809--51085850	22	2.0	22	82	13	54	40	0	2	57	1.12
51097899--51097946	25	1.9	25	95	0	87	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51109168--51109214	23	2.0	23	100	0	94	44	4	17	34	1.68
51109702--51109760	25	2.4	25	83	13	70	57	0	1	40	1.09
51113592--51113630	20	2.0	20	85	10	53	48	0	0	51	1.00
51116369--51116404	1	36.0	1	100	0	72	0	0	0	100	0.00
51116422--51116449	1	28.0	1	100	0	56	0	0	0	100	0.00
51125722--51125767	21	2.3	21	85	7	60	39	0	4	56	1.19
51138538--51138566	2	14.5	2	100	0	58	51	48	0	0	1.00
51146762--51146797	1	36.0	1	94	0	54	94	5	0	0	0.31
51152138--51152172	18	2.0	17	88	5	52	37	2	0	60	1.12
51152613--51152640	13	2.2	13	100	0	56	21	14	46	17	1.84
51155575--51155648	25	2.9	25	80	8	78	32	21	27	18	1.97
51163153--51163183	12	2.5	12	94	5	53	48	9	0	41	1.36
51167610--51167652	23	2.0	22	86	13	63	51	0	0	48	1.00
51168106--51168135	12	2.5	12	88	0	51	0	40	0	60	0.97
51175953--51175982	15	2.0	15	100	0	60	40	20	6	33	1.78
51176559--51176598	6	6.7	6	100	0	80	17	0	32	50	1.47
51181821--51181880	31	1.9	31	89	3	93	28	11	5	55	1.57
51186060--51186253	93	2.1	93	99	0	379	15	13	31	38	1.87
51186370--51186445	36	2.1	36	82	4	91	18	2	35	43	1.64
51186413--51186458	24	1.9	24	81	0	56	19	2	36	41	1.64
51186439--51186517	33	2.6	30	75	21	76	17	5	40	36	1.72
51188855--51188897	19	2.4	19	88	7	63	34	2	11	51	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51191872--51191931	30	2.0	30	100	0	120	60	20	0	20	1.37
51192958--51192985	1	28.0	1	100	0	56	100	0	0	0	0.00
51197271--51197316	13	3.5	13	96	0	83	21	8	26	43	1.81
51197985--51198044	28	2.1	28	96	0	111	35	16	3	45	1.64
51201478--51201515	4	9.5	4	88	11	60	23	0	2	73	0.95
51202871--51202895	13	1.9	13	100	0	50	32	8	20	40	1.81
51205297--51205347	15	3.5	15	72	22	54	62	0	3	33	1.13
51206544--51206592	24	2.0	24	84	7	64	67	4	0	28	1.09
51212441--51212494	25	2.2	25	90	3	83	48	18	9	24	1.77
51213992--51214030	3	13.0	3	100	0	78	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163