genome.fa.s4.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  126  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40601158--40601193	17	2.1	18	89	5	56	52	0	0	47	1.00
40601448--40601519	30	2.4	30	86	8	103	38	1	1	58	1.15
40601448--40601520	31	2.5	28	85	10	101	38	1	1	58	1.15
40604923--40604956	16	2.1	17	94	5	61	11	5	14	67	1.39
40605706--40605730	6	4.2	6	100	0	50	0	52	16	32	1.44
40612094--40612118	9	2.8	9	100	0	50	76	0	0	24	0.80
40632819--40633352	266	2.0	267	99	0	1061	39	10	12	36	1.79
40634574--40634701	50	2.6	50	77	5	132	28	21	26	23	1.99
40634638--40634759	49	2.5	49	81	4	138	31	18	25	23	1.97
40638280--40638373	42	2.2	42	81	7	111	21	20	17	41	1.90
40641172--40641214	19	2.3	19	88	8	61	44	0	6	48	1.29
40656087--40656124	3	12.7	3	100	0	76	68	0	0	31	0.90
40658691--40658728	16	2.4	16	86	4	51	68	2	2	26	1.16
40661663--40661710	20	2.5	19	82	3	60	75	2	20	2	1.02
40676412--40676446	13	2.7	13	100	0	70	22	48	22	5	1.72
40676915--40676956	19	2.2	20	91	4	68	16	14	16	52	1.75
40693608--40693646	18	2.2	18	90	0	60	23	30	10	35	1.88
40694063--40694119	25	2.3	23	78	18	62	42	0	5	52	1.24
40695300--40695334	16	2.2	16	100	0	70	25	17	25	31	1.97
40695703--40696086	127	3.0	127	87	7	534	28	18	16	36	1.92
40696144--40696267	34	3.8	32	77	9	126	44	15	0	39	1.52
40696316--40696355	15	2.6	16	84	4	55	55	30	0	15	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40699352--40699563	42	5.0	41	80	7	210	31	20	21	27	1.98
40699400--40699603	85	2.4	86	83	2	250	29	21	21	27	1.98
40699358--40699603	128	1.9	128	80	4	291	29	20	21	27	1.98
40699459--40699652	43	4.5	44	75	6	139	26	20	20	32	1.97
40700038--40700088	21	2.4	21	90	0	75	1	45	17	35	1.60
40699974--40700142	87	1.9	87	92	0	284	11	29	18	40	1.86
40701940--40702062	16	7.5	16	73	15	58	30	3	16	50	1.61
40701955--40702324	9	43.8	9	63	22	117	31	3	18	46	1.67
40701956--40702112	25	6.0	25	72	15	129	30	5	16	47	1.68
40701940--40702093	83	1.9	83	94	2	274	29	5	16	48	1.67
40702023--40702321	66	4.4	66	77	17	240	31	3	19	46	1.66
40702089--40702128	16	2.5	16	88	8	55	30	0	17	52	1.45
40702105--40702324	25	8.2	25	70	20	108	32	2	20	45	1.65
40702067--40702153	41	2.1	41	89	0	129	32	3	18	45	1.66
40702130--40702325	16	13.0	16	62	26	72	32	2	20	44	1.65
40702357--40702398	19	2.2	19	86	0	57	40	0	11	47	1.40
40702342--40702827	225	2.2	225	97	0	911	37	6	13	41	1.71
40702582--40702623	19	2.2	19	95	0	75	40	0	9	50	1.35
40704380--40704406	6	4.5	6	100	0	54	51	14	0	33	1.43
40704762--40704803	19	2.2	19	86	0	57	23	2	45	28	1.66
40705532--40705583	26	2.0	26	96	0	95	44	11	3	40	1.59
40706826--40707065	118	2.1	116	95	1	435	60	5	12	21	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40706842--40707025	54	3.1	61	70	20	206	59	4	13	22	1.52
40706858--40707041	61	3.1	61	68	25	183	58	5	13	22	1.55
40706880--40707063	64	3.1	61	69	22	190	61	5	12	20	1.52
40715967--40716442	112	4.2	113	87	3	649	28	25	23	22	1.99
40717712--40717789	19	3.7	21	79	14	81	37	6	16	39	1.74
40717724--40717789	23	3.0	23	83	12	77	37	6	16	39	1.74
40717743--40717789	23	2.0	24	91	4	78	38	4	17	40	1.69
40717737--40717802	21	3.0	21	77	12	62	34	4	15	45	1.66
40717992--40718036	23	2.0	23	86	0	63	22	0	11	66	1.22
40721832--40721955	62	2.0	62	96	0	230	16	30	30	22	1.96
40722743--40722927	44	4.2	44	65	10	108	28	25	17	28	1.98
40722629--40722977	132	2.6	132	89	1	538	26	26	19	28	1.99
40734808--40734845	12	3.1	12	88	11	51	73	7	2	15	1.17
40737548--40737586	21	2.0	21	85	10	55	53	2	15	28	1.55
40738319--40738347	12	2.4	12	100	0	58	55	13	0	31	1.39
40747054--40747124	33	2.1	34	84	2	90	26	25	23	23	2.00
40747436--40747512	27	2.9	27	82	7	102	27	15	18	38	1.91
40754596--40754650	26	2.1	26	89	0	83	34	23	20	21	1.97
40754813--40754953	27	5.2	26	81	4	104	24	15	19	40	1.90
40754839--40754967	54	2.4	54	86	3	170	22	17	18	41	1.90
40754839--40754967	27	4.7	27	82	5	138	22	17	18	41	1.90
40775001--40775055	29	1.9	29	88	3	85	69	0	1	29	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40778030--40778185	42	3.7	41	73	14	147	26	18	25	30	1.98
40784042--40785066	512	2.0	508	92	2	1727	37	12	15	34	1.86
40796129--40796156	11	2.5	11	100	0	56	35	0	0	64	0.94
40797202--40797235	18	2.0	18	88	11	54	50	8	0	41	1.34
40798850--40798896	25	1.9	24	83	12	60	6	23	0	70	1.10
40801639--40801794	45	3.5	45	74	16	135	28	26	19	25	1.99
40801981--40802470	264	1.9	264	87	0	719	26	23	19	30	1.98
40801981--40802473	132	3.7	132	85	0	653	26	23	19	30	1.98
40802355--40802554	88	2.3	88	86	0	274	22	22	24	31	1.99
40802437--40802783	132	2.6	132	84	0	444	25	24	20	30	1.99
40802225--40802693	220	2.1	220	85	0	634	25	23	20	30	1.98
40802118--40802801	352	1.9	352	94	0	1199	25	24	19	30	1.98
40807165--40807211	21	2.2	21	80	0	58	55	10	6	27	1.58
40808239--40808276	17	2.2	17	95	0	67	78	0	0	21	0.74
40808238--40808287	25	2.0	24	84	3	64	76	2	0	22	0.89
40809133--40809186	28	2.0	27	88	3	81	3	40	1	53	1.29
40818793--40818860	6	9.7	7	77	19	63	27	0	1	70	0.96
40818802--40818859	6	9.7	6	83	10	66	29	0	1	68	0.99
40818802--40818864	20	3.0	20	82	17	76	30	0	1	68	0.99
40820695--40820739	6	7.7	6	85	14	67	28	0	0	71	0.87
40820700--40820732	17	2.0	17	94	5	59	30	0	0	69	0.88
40820695--40820738	23	2.0	22	95	4	79	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40823109--40823175	25	2.7	24	84	6	82	19	28	17	34	1.95
40823139--40823199	25	2.4	25	83	5	70	19	31	14	34	1.92
40827037--40827077	9	4.6	9	100	0	82	31	0	12	56	1.36
40836470--40836529	30	2.0	31	90	3	95	38	0	41	20	1.52
40837355--40837408	14	3.9	14	76	9	56	35	27	24	12	1.92
40838132--40838169	18	2.1	18	100	0	76	47	21	10	21	1.80
40839304--40839349	17	2.7	17	79	0	56	56	0	0	43	0.99
40843319--40843359	20	2.0	22	85	9	59	70	4	9	14	1.30
40843521--40843578	22	2.6	22	84	7	73	43	17	3	36	1.66
40843534--40843612	21	3.8	19	80	12	77	39	16	7	36	1.77
40843568--40843611	21	2.1	21	100	0	88	38	13	9	38	1.77
40843985--40844302	132	2.4	132	90	0	492	27	24	18	29	1.98
40851934--40852492	45	12.9	42	70	15	246	30	18	23	27	1.98
40851936--40852528	89	6.8	88	73	7	478	29	19	23	27	1.98
40852024--40852575	43	12.7	43	71	12	249	30	19	22	27	1.98
40851978--40852396	172	2.4	172	91	0	685	29	19	23	27	1.98
40855614--40855665	24	2.2	24	86	6	70	36	3	11	48	1.58
40858586--40858641	28	2.0	28	93	3	96	28	26	23	21	1.99
40859068--40859612	27	20.4	26	79	6	425	18	18	20	43	1.88
40859068--40859633	81	7.1	80	79	6	499	18	18	20	43	1.88
40862983--40863034	24	2.2	24	89	0	77	36	3	9	50	1.54
40863396--40863633	118	2.0	119	86	3	336	35	16	12	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40863665--40863712	8	6.0	8	80	9	53	27	0	2	70	0.98
40863665--40863694	15	2.0	15	93	0	51	23	0	0	76	0.78
40863661--40863713	17	3.2	17	82	12	58	26	0	1	71	0.96
40866511--40866628	17	7.1	17	66	21	70	31	27	17	23	1.97
40866503--40866709	34	6.1	34	79	2	195	30	25	17	26	1.98
40866886--40866946	26	2.3	27	83	5	81	26	24	29	19	1.99
40868675--40868714	21	1.9	21	90	10	64	40	5	5	50	1.46
40868822--40868871	12	4.2	12	77	10	50	56	0	0	44	0.99
40870716--40870995	140	2.0	140	100	0	560	37	11	12	37	1.80
40870756--40871033	140	2.0	137	85	3	340	41	12	10	35	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163