genome.fa.s4.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  106  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34166410--34166446	15	2.5	15	95	0	65	21	0	32	45	1.52
34166389--34166467	36	2.2	36	90	4	124	22	0	31	45	1.53
34166900--34166952	25	2.1	26	89	3	81	18	0	32	49	1.48
34168148--34168173	7	3.7	7	100	0	52	57	15	0	26	1.38
34169075--34169174	51	2.0	51	82	7	123	46	2	25	27	1.64
34169134--34169211	11	7.0	11	74	18	65	44	0	29	25	1.54
34169134--34169209	33	2.3	35	80	13	88	43	0	30	26	1.55
34174587--34174618	6	5.3	6	100	0	64	50	15	34	0	1.45
34176165--34176348	91	2.0	91	89	2	280	21	5	23	48	1.71
34194762--34194840	39	2.0	39	92	0	131	41	15	10	32	1.80
34197690--34197792	30	3.4	30	72	11	102	40	2	3	52	1.35
34197679--34197794	60	1.9	61	92	1	198	42	2	3	51	1.32
34198789--34198898	40	2.8	40	80	10	111	36	22	21	19	1.95
34198943--34199101	41	3.9	41	94	0	246	22	20	28	28	1.98
34199090--34199132	21	2.0	21	90	0	68	34	23	16	25	1.95
34199459--34199512	22	2.5	22	78	3	56	25	0	31	42	1.55
34199466--34199497	15	2.1	15	94	0	55	25	0	34	40	1.56
34199475--34199508	7	4.7	7	88	3	50	26	0	32	41	1.56
34199466--34199512	14	3.3	15	85	8	62	25	0	31	42	1.55
34199679--34200032	58	6.1	58	100	0	708	53	1	5	39	1.33
34204374--34204508	43	3.2	42	82	3	162	20	19	32	27	1.97
34207118--34207165	18	2.7	18	80	0	60	27	14	12	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34208842--34208920	25	3.1	25	76	8	79	25	6	5	63	1.39
34214757--34215061	45	6.8	45	75	5	217	28	22	23	25	1.99
34214954--34215269	44	7.1	44	66	14	164	29	25	22	23	1.99
34214857--34215683	267	3.1	267	84	4	1033	29	24	22	22	1.99
34214865--34215683	89	9.2	89	85	2	923	30	24	22	22	1.99
34215688--34215804	44	2.6	44	81	9	123	29	17	23	29	1.97
34215872--34216257	44	8.6	44	72	9	219	30	19	22	28	1.98
34215915--34216257	44	7.6	44	73	7	226	29	19	22	28	1.98
34217980--34218039	30	2.0	30	100	0	120	30	26	0	43	1.55
34219203--34219583	190	2.0	190	99	0	753	33	19	14	32	1.92
34221060--34221111	26	2.0	26	100	0	104	57	7	0	34	1.27
34221174--34221240	27	2.5	27	92	0	107	28	28	26	16	1.97
34221285--34221353	4	17.2	4	73	11	61	65	0	34	0	0.93
34221276--34221363	42	2.2	38	86	13	115	61	0	38	0	0.96
34235572--34235653	16	5.3	15	70	16	60	30	19	17	32	1.95
34236242--34236284	21	2.0	22	82	13	54	62	2	0	34	1.08
34239317--34239633	51	6.3	51	92	1	503	32	15	23	29	1.95
34239317--34239633	101	3.1	101	92	0	508	32	15	23	29	1.95
34239317--34239633	152	2.1	151	92	2	519	32	15	23	29	1.95
34242648--34242700	26	2.0	27	96	3	99	56	9	0	33	1.32
34242693--34242721	10	2.7	11	89	10	51	68	17	6	6	1.34
34242695--34242720	10	2.6	10	100	0	52	69	15	7	7	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34242751--34242826	27	2.8	27	83	0	107	27	27	27	17	1.97
34246561--34246610	15	3.2	16	72	8	50	32	12	22	34	1.90
34253256--34253537	140	2.0	141	95	1	503	39	16	13	30	1.87
34258865--34259106	113	2.1	114	97	1	461	43	7	5	42	1.56
34266692--34266736	23	2.0	22	91	4	72	31	8	4	55	1.51
34266905--34266958	26	2.2	25	87	12	76	38	5	1	53	1.35
34267016--34267042	4	6.8	4	100	0	54	22	0	0	77	0.76
34271041--34271199	43	3.7	43	76	9	155	25	16	25	32	1.97
34276018--34276050	13	2.6	13	90	4	50	39	3	0	57	1.14
34276058--34276082	9	2.8	9	100	0	50	44	0	0	56	0.99
34276101--34276176	34	2.2	34	79	9	84	69	3	22	3	1.21
34276101--34276175	10	7.8	9	75	14	53	70	4	22	2	1.16
34276111--34276167	14	4.1	14	76	14	55	68	5	24	1	1.20
34276134--34276172	20	2.0	19	90	5	60	66	2	30	0	1.05
34276111--34276175	14	4.5	14	73	17	53	69	4	24	1	1.16
34277031--34277144	37	2.9	41	76	10	146	26	16	24	32	1.96
34277035--34277175	40	3.6	40	75	8	137	29	16	23	31	1.96
34288136--34288209	37	2.0	37	100	0	148	45	10	16	27	1.80
34292233--34292286	25	2.2	25	90	6	83	24	27	18	29	1.98
34292244--34292300	25	2.3	25	84	0	69	24	22	24	28	2.00
34305285--34305386	9	11.4	9	69	13	50	33	5	0	59	1.28
34306066--34306103	20	2.0	20	94	5	69	31	10	2	55	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34306135--34306220	31	2.8	30	75	5	82	52	11	5	30	1.61
34307695--34307732	19	2.0	20	94	5	69	68	0	26	5	1.11
34311276--34311622	123	2.8	123	90	2	538	30	15	21	32	1.94
34311957--34312012	28	2.0	28	96	0	103	25	16	39	19	1.91
34314772--34314894	55	2.2	56	95	1	221	44	5	11	38	1.64
34314889--34315536	29	22.6	29	88	4	942	25	0	27	46	1.55
34314901--34314985	23	3.4	23	77	17	98	25	0	28	45	1.54
34316731--34316755	7	3.6	7	100	0	50	60	12	0	28	1.32
34317647--34317761	51	2.3	51	92	3	187	43	0	27	28	1.55
34317731--34317781	22	2.3	22	100	0	102	39	0	33	27	1.57
34318126--34318167	20	2.1	20	86	0	57	47	2	2	47	1.28
34318128--34318191	28	2.2	28	78	13	69	51	3	1	43	1.26
34323449--34323727	139	2.0	139	100	0	558	22	27	13	36	1.92
34325990--34326023	16	2.1	16	88	5	50	64	0	2	32	1.08
34326678--34326711	6	5.7	6	100	0	68	17	50	14	17	1.79
34326678--34326717	18	2.2	18	90	0	62	20	47	12	20	1.81
34331224--34331251	6	4.7	6	100	0	56	32	17	14	35	1.90
34331597--34331630	16	2.1	16	89	10	52	50	2	0	47	1.16
34331785--34331817	16	2.1	16	88	5	50	30	0	0	69	0.88
34333023--34333071	23	2.2	22	82	10	55	44	2	0	53	1.12
34333765--34333807	17	2.6	16	85	7	59	34	0	6	58	1.25
34333775--34333807	16	2.0	17	94	5	59	36	0	3	60	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34336272--34336313	15	2.9	15	86	13	61	30	0	2	66	1.04
34339331--34339380	26	1.9	26	84	8	66	30	2	6	62	1.31
34340074--34340702	318	2.0	319	91	3	1034	29	14	12	42	1.84
34342323--34342427	49	2.1	49	94	0	183	31	7	10	50	1.65
34343868--34343940	10	7.9	10	69	22	52	43	0	1	54	1.08
34343882--34344013	18	7.8	18	75	13	111	41	0	2	55	1.18
34344002--34344075	40	1.9	37	84	13	96	47	1	2	48	1.24
34344167--34344259	44	2.1	44	86	9	127	35	27	4	32	1.77
34347067--34347223	63	2.5	63	82	4	183	34	31	6	28	1.82
34349599--34349629	9	3.4	9	90	0	53	25	12	22	38	1.90
34349597--34349639	18	2.3	18	92	4	68	32	13	18	34	1.90
34349681--34349717	9	4.1	9	89	0	56	48	13	8	29	1.71
34351875--34351902	2	14.0	2	100	0	56	50	0	50	0	1.00
34351882--34351974	42	2.2	42	94	1	161	47	7	34	10	1.67
34352821--34352975	77	2.0	78	98	1	303	52	6	3	37	1.46
34354050--34354093	19	2.2	20	88	4	63	22	4	6	65	1.35
34357431--34357459	14	2.1	14	93	6	51	37	6	13	41	1.72
34358026--34358057	14	2.2	15	94	5	57	43	0	0	56	0.99
34360007--34360074	30	2.3	30	94	0	118	27	26	26	19	1.99
34360007--34360082	30	2.6	29	89	4	100	25	27	26	21	1.99
34361707--34361781	25	3.0	25	75	14	66	26	20	26	26	1.99
34362600--34362641	21	2.0	21	86	9	59	23	7	4	64	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34364839--34364921	24	3.6	23	73	12	62	66	1	32	0	1.00
34364870--34364960	10	9.4	10	72	12	57	63	0	35	1	1.02
34364842--34364921	34	2.8	28	73	24	76	66	1	32	0	1.00
34364873--34365014	38	3.8	38	80	12	159	65	0	33	0	0.98
34364945--34364987	21	2.0	22	81	4	52	67	0	32	0	0.91
34365967--34366009	19	2.3	19	95	0	77	23	37	16	23	1.94
34366294--34366375	40	2.0	40	90	0	128	31	34	20	13	1.91
34367455--34367492	18	2.1	18	90	0	58	15	44	5	34	1.69
34367458--34367499	18	2.3	18	83	0	57	21	47	2	28	1.63
34368361--34368440	27	3.0	27	94	0	133	13	30	28	27	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163