genome.fa.s4.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  97  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31195234--31195320	30	2.9	31	74	17	92	41	13	2	42	1.57
31202614--31202664	21	2.5	20	75	15	59	35	0	5	58	1.22
31216931--31216969	14	2.7	15	84	4	53	51	5	5	38	1.46
31222112--31222151	20	1.9	22	90	10	66	62	15	5	17	1.49
31223923--31223956	18	1.9	18	88	5	52	35	2	5	55	1.39
31224296--31224336	21	2.0	20	85	4	55	51	2	2	43	1.28
31225575--31225611	9	4.1	9	85	0	56	29	8	13	48	1.71
31240547--31240582	15	2.3	16	90	4	56	80	2	16	0	0.83
31254549--31254677	43	3.0	43	82	10	156	34	28	17	19	1.95
31257111--31257152	11	3.7	11	82	14	50	42	7	0	50	1.30
31259825--31259881	27	2.1	26	81	18	71	38	0	3	57	1.16
31259835--31259891	28	2.1	27	86	3	78	45	0	1	52	1.11
31266335--31266379	1	45.0	1	100	0	90	0	0	0	100	0.00
31266575--31266645	31	2.3	31	97	0	133	40	16	5	36	1.73
31269759--31269795	19	1.9	19	94	0	65	35	0	0	64	0.94
31269760--31269802	19	2.2	19	87	4	59	34	0	2	62	1.08
31280419--31280478	24	2.3	27	80	13	81	58	3	8	30	1.44
31280425--31280505	21	3.7	21	76	13	74	55	6	6	32	1.49
31280419--31280485	25	2.6	25	83	6	82	56	4	7	31	1.47
31291018--31291051	14	2.3	15	90	5	52	38	20	5	35	1.77
31291102--31291127	2	13.0	2	100	0	52	50	0	0	50	1.00
31291288--31291497	104	2.0	105	98	0	404	37	28	14	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31298584--31298622	14	2.9	14	81	11	55	64	0	5	30	1.15
31321664--31321766	41	2.5	41	81	12	106	28	24	20	27	1.99
31322724--31322783	31	2.0	28	87	9	84	38	5	0	56	1.21
31322728--31322783	28	2.0	28	89	6	87	39	5	0	55	1.23
31322975--31323003	14	2.0	15	93	6	51	51	20	0	27	1.47
31325992--31326017	5	5.2	5	100	0	52	38	0	0	61	0.96
31327152--31327204	22	2.4	22	77	0	61	15	24	18	41	1.89
31331913--31331943	14	2.2	14	94	0	53	38	0	12	48	1.42
31332754--31332786	5	6.6	5	100	0	66	0	18	0	81	0.68
31339078--31339110	16	2.1	16	94	0	57	45	3	6	45	1.43
31339080--31339119	16	2.5	16	87	0	53	45	2	7	45	1.45
31339192--31339219	9	3.1	9	100	0	56	32	0	10	57	1.33
31339108--31339317	68	3.1	68	96	2	381	40	4	9	46	1.57
31339260--31339287	9	3.1	9	100	0	56	32	0	10	57	1.33
31342308--31342354	21	2.2	21	88	7	69	42	0	0	57	0.98
31346189--31346231	19	2.3	18	80	4	50	58	0	6	34	1.25
31348356--31348380	4	6.2	4	100	0	50	48	0	0	52	1.00
31348633--31348657	4	6.2	4	100	0	50	48	0	0	52	1.00
31348266--31348820	277	2.0	278	99	0	1094	37	14	6	41	1.72
31351737--31351795	23	2.7	21	82	12	75	18	20	22	38	1.93
31356609--31356652	23	1.9	22	82	17	54	36	25	0	38	1.56
31356747--31356927	51	3.6	50	79	6	159	33	27	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31359137--31359172	18	1.9	19	94	5	65	44	0	5	50	1.25
31359138--31359180	18	2.3	19	84	8	61	48	0	6	44	1.29
31359160--31359222	31	2.0	32	81	9	76	46	0	7	46	1.32
31360438--31360676	50	4.8	50	87	0	334	24	23	30	21	1.99
31362928--31363017	23	4.0	23	80	7	105	18	22	22	36	1.95
31370801--31371038	27	8.8	27	84	1	280	21	15	20	42	1.89
31375786--31375811	13	2.0	13	100	0	52	15	7	23	53	1.67
31379362--31379391	9	3.3	9	100	0	60	53	0	0	46	1.00
31379502--31379769	125	2.1	127	85	6	359	37	14	17	31	1.89
31381173--31381302	61	2.2	59	84	12	151	52	7	4	35	1.51
31382779--31382836	25	2.4	24	83	13	66	63	0	1	34	1.04
31384841--31384902	31	2.0	31	100	0	124	22	19	16	41	1.89
31397400--31397424	12	2.1	12	100	0	50	40	16	0	44	1.47
31400442--31400474	16	2.1	16	94	0	57	21	30	24	24	1.99
31400625--31400700	25	3.0	27	75	13	79	14	25	23	36	1.93
31424225--31424379	50	3.1	50	76	9	138	19	26	20	34	1.96
31424225--31424325	25	4.0	25	87	5	132	17	25	20	35	1.95
31424287--31424375	25	3.6	25	80	8	92	21	23	21	33	1.97
31424235--31424390	25	6.2	24	80	5	89	19	26	20	33	1.96
31424344--31424416	25	2.9	25	84	8	78	19	27	21	31	1.97
31428505--31428781	137	2.0	138	99	0	547	40	9	7	42	1.66
31429069--31429197	31	4.4	30	72	16	108	21	17	14	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31430399--31430443	23	1.9	23	81	4	54	17	8	11	62	1.53
31432311--31432340	3	10.0	3	100	0	60	33	66	0	0	0.92
31432324--31432405	30	2.7	30	96	0	146	34	50	8	7	1.61
31433152--31433218	33	2.0	33	88	0	98	31	20	17	29	1.96
31433789--31433822	17	1.9	18	94	5	61	58	0	0	41	0.98
31436332--31436392	30	2.0	30	100	0	122	42	19	3	34	1.68
31438965--31439049	31	2.8	30	80	5	91	35	9	12	42	1.76
31439547--31439641	47	2.0	48	93	2	165	43	3	9	44	1.52
31440255--31440524	131	2.1	132	98	0	524	45	10	4	39	1.59
31458983--31459047	3	21.7	3	100	0	130	67	0	0	32	0.91
31460427--31460460	17	1.9	18	88	5	52	11	29	11	47	1.76
31460639--31461162	44	11.5	44	79	9	380	29	19	17	33	1.95
31460815--31460929	41	2.8	42	88	2	146	32	18	17	32	1.94
31477191--31477412	6	37.0	6	99	0	435	32	33	33	0	1.58
31483728--31483756	3	9.7	3	100	0	58	68	0	0	31	0.89
31485737--31485764	1	28.0	1	100	0	56	0	0	100	0	0.00
31486277--31486303	14	1.9	14	100	0	54	85	0	7	7	0.75
31499961--31500002	22	2.0	22	85	4	59	47	2	0	50	1.14
31501854--31501904	21	2.5	21	81	9	61	45	7	5	41	1.57
31507559--31507584	7	3.7	7	100	0	52	15	0	11	73	1.11
31507733--31507757	2	12.5	2	100	0	50	52	0	0	48	1.00
31509580--31509679	1	100.0	1	85	0	137	93	0	7	0	0.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31509580--31509686	27	4.0	27	98	0	205	91	0	7	0	0.46
31524475--31524501	8	3.4	8	100	0	54	55	0	0	44	0.99
31528967--31528998	13	2.5	13	95	5	57	71	6	0	21	1.07
31529246--31529294	23	2.1	22	82	14	55	53	16	4	26	1.61
31531306--31531364	27	2.2	27	88	8	86	52	5	10	32	1.57
31531497--31531536	21	1.9	21	90	10	64	5	12	15	67	1.38
31531497--31531542	21	2.2	21	84	7	58	6	13	13	67	1.41
31532757--31532797	21	2.0	21	85	9	57	46	12	4	36	1.63
31533729--31533755	10	2.7	10	100	0	54	88	0	11	0	0.50
31534195--31534288	21	4.8	20	66	18	54	26	6	13	53	1.64
31534191--31534398	58	3.7	57	83	7	237	24	9	15	50	1.74
31534893--31534934	21	2.0	21	90	0	66	45	7	0	47	1.30
31534898--31534940	21	2.2	20	83	8	52	41	4	2	51	1.35
31538995--31539066	21	3.5	21	86	1	92	33	26	25	15	1.95
31538995--31539079	21	4.1	21	83	1	91	32	24	24	17	1.97
31539280--31539351	36	2.0	36	86	5	101	30	23	0	45	1.53
31541313--31541448	51	2.7	51	94	0	236	26	27	16	30	1.97
31543099--31543127	5	5.8	5	100	0	58	17	0	0	82	0.66
31546390--31546470	36	2.2	36	88	0	117	40	7	3	48	1.49
31546968--31547350	192	2.0	191	91	1	624	24	11	20	43	1.85
31548012--31548164	77	2.0	77	94	0	270	30	12	22	34	1.91
31548670--31548768	35	2.8	35	85	0	144	23	4	18	54	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31550024--31550110	33	2.7	32	78	7	95	47	18	8	26	1.76
31550101--31550141	20	2.0	20	90	0	64	46	12	12	29	1.77
31550544--31550714	91	1.9	89	80	7	202	40	18	8	32	1.82
31551065--31551235	87	2.0	87	83	6	222	33	8	18	39	1.82
31560719--31560959	120	2.0	121	96	2	450	33	13	14	38	1.86
31582107--31582155	17	2.8	17	82	11	64	30	0	0	69	0.89
31582685--31582744	29	2.1	29	84	3	77	38	0	3	58	1.15
31590649--31590856	75	2.7	75	85	6	218	50	6	4	37	1.50
31590705--31590856	75	2.0	76	98	1	297	52	5	3	38	1.43
31605473--31605509	18	2.1	18	90	5	58	40	5	16	37	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163