genome.fa.s4.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  118  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38105332--38105509	76	2.3	76	85	3	243	32	19	21	26	1.97
38108393--38108451	29	2.0	29	100	0	118	27	10	23	38	1.87
38110682--38110726	3	15.0	3	100	0	90	0	33	0	66	0.92
38118266--38118328	33	1.9	33	93	0	108	25	25	20	28	1.99
38122985--38123050	29	2.4	27	85	14	91	6	13	1	78	1.00
38122985--38123043	26	2.3	24	83	13	66	6	13	1	77	1.03
38123831--38123879	20	2.5	19	77	9	53	30	6	4	59	1.41
38125464--38125529	29	2.4	27	85	14	91	6	13	1	78	1.00
38125464--38125522	26	2.3	24	83	13	66	6	13	1	77	1.03
38128423--38128501	25	3.2	25	78	10	90	29	18	29	22	1.98
38128426--38128603	50	3.6	49	75	9	164	32	20	26	20	1.97
38128434--38128603	25	6.8	25	75	9	118	31	20	27	20	1.98
38128448--38128592	49	2.9	50	75	11	136	33	20	27	18	1.96
38128434--38128604	74	2.3	73	78	7	182	31	20	27	20	1.97
38132379--38132437	23	2.8	20	79	20	66	45	0	6	47	1.29
38132379--38132437	11	5.7	10	74	21	50	45	0	6	47	1.29
38138964--38138988	2	12.5	2	100	0	50	48	0	0	52	1.00
38144244--38144322	11	7.5	11	75	15	69	22	29	1	46	1.60
38144256--38144334	40	2.0	39	92	2	131	25	27	1	45	1.61
38144266--38144325	29	2.1	29	84	6	77	25	28	1	45	1.63
38146166--38146208	18	2.4	18	84	0	50	18	25	9	46	1.79
38149813--38149909	47	2.0	48	96	4	178	41	24	17	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38158410--38158471	31	2.0	31	100	0	124	41	16	9	32	1.80
38158809--38159077	126	2.1	126	88	1	414	26	22	18	32	1.97
38161314--38161351	15	2.4	16	82	13	51	50	0	5	44	1.24
38164652--38164687	14	2.6	13	91	4	54	33	19	13	33	1.91
38171269--38171321	18	2.8	18	77	5	52	71	1	5	20	1.16
38171872--38171905	17	2.0	17	88	0	50	58	0	2	38	1.13
38176029--38176092	33	2.0	33	84	3	85	45	18	7	28	1.77
38181416--38181903	244	2.0	244	96	0	895	31	12	9	47	1.72
38182533--38182563	9	3.4	9	90	0	53	51	6	9	32	1.60
38182622--38182696	30	2.5	30	95	0	132	21	44	0	34	1.53
38183352--38183390	19	2.1	19	85	0	51	43	2	20	33	1.65
38185141--38185274	54	2.4	54	81	10	146	26	17	23	31	1.97
38188765--38188873	24	4.5	24	72	13	71	16	26	20	36	1.93
38192662--38192705	23	1.9	23	85	0	61	27	0	4	68	1.09
38195491--38196027	44	12.5	44	70	11	238	30	23	18	27	1.98
38195451--38195725	128	2.1	128	94	0	487	33	21	18	26	1.96
38195691--38195946	89	3.0	87	75	13	267	28	24	18	28	1.98
38195745--38196073	128	2.6	128	86	4	461	29	24	19	26	1.98
38195435--38196117	345	2.0	345	84	8	892	29	23	18	28	1.98
38195655--38196117	44	10.7	43	70	16	228	28	23	19	28	1.98
38209469--38209494	10	2.6	10	100	0	52	26	0	0	73	0.84
38210709--38210758	24	2.1	23	96	3	91	30	32	12	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38218861--38218888	7	4.0	7	100	0	56	42	42	0	14	1.45
38221434--38221601	63	2.7	61	80	9	162	45	13	3	37	1.61
38221487--38221618	63	2.1	64	88	4	196	46	12	3	37	1.61
38221619--38221650	16	1.9	17	93	6	57	37	3	0	59	1.13
38221817--38221849	14	2.4	14	90	5	50	39	6	18	36	1.75
38222293--38222333	19	2.2	19	86	0	55	41	24	4	29	1.75
38235390--38235436	24	2.0	24	87	4	69	61	4	2	31	1.27
38243568--38243592	2	12.5	2	100	0	50	52	0	0	48	1.00
38244648--38244767	62	1.9	62	91	3	197	60	6	5	26	1.44
38248525--38248767	71	3.4	71	88	2	353	27	21	25	25	1.99
38248667--38248881	114	1.9	114	89	3	335	27	20	25	26	1.99
38248781--38248954	73	2.4	73	93	0	294	26	20	27	25	1.99
38248596--38249232	187	3.4	185	90	1	934	27	20	26	26	1.99
38248854--38249068	114	1.9	114	94	0	376	24	20	28	26	1.99
38248968--38249107	73	1.9	73	92	0	235	27	19	25	27	1.99
38248973--38249126	73	2.1	73	87	0	218	26	19	25	27	1.99
38249913--38249953	21	2.0	21	85	9	57	24	0	43	31	1.54
38249889--38249999	22	5.3	21	76	8	84	24	0	39	35	1.62
38254878--38255008	43	3.0	43	89	0	154	22	16	29	31	1.96
38255015--38255178	82	2.0	82	100	0	328	26	23	25	24	2.00
38262951--38263002	24	2.2	24	89	0	77	34	3	7	53	1.48
38263111--38263144	14	2.3	15	90	5	52	0	5	35	58	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38263830--38263856	10	2.7	10	100	0	54	14	40	0	44	1.46
38265380--38266094	358	2.0	358	98	0	1385	29	16	18	35	1.93
38267929--38268105	31	5.7	31	84	0	230	29	10	16	43	1.81
38267933--38268105	93	1.9	92	88	1	265	28	10	17	43	1.82
38270448--38270499	24	2.2	24	89	0	77	38	3	3	53	1.37
38272314--38272420	50	2.2	49	96	3	205	42	16	11	28	1.83
38276895--38276930	18	2.1	17	89	5	54	47	2	5	44	1.41
38278938--38279110	91	1.9	91	83	2	222	35	24	9	31	1.87
38279106--38279282	20	8.9	20	70	10	96	42	9	9	38	1.69
38279105--38279220	40	2.9	41	72	13	123	42	7	10	39	1.68
38279101--38279282	79	2.3	79	84	2	222	42	9	9	37	1.70
38279146--38279318	40	4.5	40	76	11	148	42	10	9	37	1.72
38279430--38279508	20	4.0	20	74	12	81	49	8	6	35	1.59
38279421--38279499	40	2.0	40	87	0	113	46	8	7	36	1.64
38279513--38279565	20	2.6	21	79	8	65	43	20	7	28	1.79
38279610--38279650	20	2.0	20	86	9	57	43	14	7	34	1.73
38279719--38279847	20	6.6	20	69	17	74	43	11	7	37	1.70
38279739--38279856	40	3.0	40	75	9	116	44	12	7	35	1.71
38280004--38280150	40	3.8	40	84	7	169	34	12	11	41	1.79
38280042--38280136	40	2.4	39	94	5	172	36	10	10	42	1.74
38280004--38280146	20	7.2	20	76	8	132	33	12	11	41	1.80
38280118--38280172	20	2.8	20	83	2	58	45	9	12	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38280115--38280180	20	3.4	19	77	10	53	40	7	13	37	1.73
38288860--38288901	19	2.3	19	87	4	59	52	0	2	45	1.13
38288949--38288991	19	2.1	21	83	12	54	65	2	0	32	1.06
38289479--38289511	15	2.1	17	88	11	52	36	0	3	60	1.12
38289495--38289548	22	2.3	24	78	15	60	37	3	5	53	1.42
38291985--38292044	29	2.1	29	96	0	111	45	13	6	35	1.70
38292424--38292476	23	2.3	23	100	0	106	37	24	3	33	1.74
38294981--38295103	43	2.8	43	95	1	219	26	13	26	32	1.94
38299144--38299195	23	2.2	24	83	16	74	38	0	1	59	1.08
38299146--38299191	24	1.9	24	91	8	76	36	0	2	60	1.09
38299258--38299338	29	2.8	30	63	12	69	41	8	7	41	1.63
38299785--38299847	32	2.0	30	84	6	81	46	6	11	36	1.65
38301339--38301398	27	2.1	29	90	6	97	10	0	40	50	1.36
38301670--38301705	7	5.1	7	86	0	54	11	0	38	50	1.38
38301448--38301692	96	2.6	96	81	4	298	37	2	17	42	1.62
38301731--38302143	126	3.3	126	93	0	691	31	19	21	27	1.97
38305285--38305343	21	2.8	21	82	10	59	11	18	38	30	1.87
38305585--38305627	18	2.4	18	88	0	59	44	9	27	18	1.80
38305688--38305746	30	2.0	30	82	0	73	11	13	40	33	1.81
38306281--38306313	7	4.7	7	100	0	66	57	15	0	27	1.38
38309199--38309349	46	3.1	45	69	18	124	33	17	23	25	1.97
38309257--38309463	107	2.0	104	88	4	308	34	17	24	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38309157--38309491	104	3.3	101	83	7	417	30	17	25	26	1.98
38316723--38316774	22	2.4	22	80	6	61	59	11	3	25	1.49
38320925--38321089	35	4.8	34	79	8	163	40	29	11	19	1.86
38320925--38321089	70	2.4	70	81	6	192	40	29	11	19	1.86
38328372--38328535	35	4.7	35	78	8	165	38	31	10	20	1.86
38329485--38329509	12	2.1	12	100	0	50	24	8	0	68	1.16
38333072--38333125	25	2.2	26	86	6	76	12	9	11	66	1.44
38340222--38340261	5	7.8	5	86	13	55	80	0	17	2	0.83
38340567--38340599	6	5.5	6	100	0	66	33	0	51	15	1.43
38343155--38343193	7	5.6	7	96	0	69	61	0	10	28	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163