Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  14  of  163  ( 19464 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4747047--4747089
20
2.1
20
82
4
50
44
25
4
25
1.73
4787648--4787688
15
2.7
15
85
7
57
29
4
4
60
1.38
4787889--4787919
13
2.3
14
94
5
55
25
0
0
74
0.82
4791097--4791128
15
2.1
16
94
5
57
28
0
3
68
1.04
4796037--4796132
38
2.5
39
80
11
103
56
3
3
37
1.31
4796037--4796147
39
2.9
38
79
14
104
55
2
2
38
1.28
4800336--4800426
16
5.4
16
74
10
83
47
13
12
27
1.78
4800333--4800417
17
5.0
16
71
10
53
50
14
10
24
1.74
4800318--4800427
18
6.4
17
72
7
78
47
12
12
27
1.78
4800448--4800490
18
2.4
18
88
11
63
51
4
11
32
1.59
4800882--4800923
19
2.2
19
83
8
50
71
2
4
21
1.16
4801107--4801157
11
4.5
11
82
4
66
1
23
0
74
0.92
4801233--4801280
24
2.1
23
84
7
62
0
33
0
66
0.92
4801234--4801273
20
2.1
18
90
9
62
0
32
0
67
0.91
4801241--4801282
13
3.4
12
84
12
50
0
28
0
71
0.86
4801763--4801849
30
2.9
30
77
6
86
43
2
21
32
1.65
4804781--4805038
129
2.0
129
94
0
453
37
17
12
32
1.87
4806190--4806280
29
3.1
29
78
10
96
47
4
0
48
1.22
4806367--4806407
18
2.3
18
100
0
82
21
26
14
36
1.93
4808482--4808510
14
2.0
15
93
6
51
48
0
24
27
1.51
4814274--4814314
18
2.3
18
91
0
64
26
7
29
36
1.83
4815524--4816466
471
2.0
471
100
0
1886
35
14
17
32
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4816892--4816962
27
2.6
27
77
0
79
28
33
29
8
1.86
4816983--4817520
157
3.4
157
93
2
850
28
8
8
54
1.60
4817684--4817818
30
4.4
30
79
12
157
62
7
6
23
1.46
4817707--4817753
12
3.8
12
83
10
58
68
6
2
23
1.24
4817681--4817810
64
2.0
67
89
6
203
61
7
6
23
1.48
4817758--4817808
16
3.3
16
71
20
54
54
11
7
25
1.63
4821454--4821728
146
1.9
146
93
2
480
34
14
11
40
1.81
4829355--4829383
14
2.0
15
93
6
51
48
0
24
27
1.51
4830324--4830543
108
2.0
109
98
0
424
39
12
11
36
1.80
4842754--4842784
14
2.1
15
94
5
55
48
0
25
25
1.52
4843202--4843274
36
2.0
36
100
0
146
50
10
19
19
1.76
4843411--4843451
20
2.0
21
90
4
66
46
4
29
19
1.71
4844626--4845893
87
14.6
87
99
0
2518
31
17
20
30
1.95
4857130--4857160
14
2.1
15
94
5
55
48
0
25
25
1.52
4858643--4858689
24
2.0
24
82
0
58
44
4
6
44
1.49
4867133--4867179
18
2.8
17
84
9
60
38
23
25
12
1.90
4867133--4867179
17
2.8
17
84
9
60
38
23
25
12
1.90
4874322--4874352
14
2.1
15
94
5
55
48
0
25
25
1.52
4874948--4874988
20
2.0
21
85
4
57
48
2
26
21
1.63
4882554--4882634
26
3.2
26
64
22
62
24
13
27
34
1.93
4882448--4882632
101
1.8
101
88
5
284
25
17
27
30
1.97
4882656--4882988
102
3.3
102
90
1
542
20
21
27
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4883801--4883894
49
1.9
49
84
0
125
27
13
27
30
1.94
4893159--4893191
16
2.1
16
94
0
57
60
3
3
33
1.27
4893898--4893936
18
2.2
18
86
9
53
66
7
23
2
1.30
4896065--4896095
14
2.1
15
94
5
55
48
0
25
25
1.52
4896677--4896717
20
2.0
21
90
4
66
46
2
29
21
1.64
4897797--4898098
153
2.0
153
90
2
473
21
21
18
38
1.94
4903331--4903370
17
2.3
18
86
4
55
35
2
0
62
1.09
4903408--4903481
29
2.5
29
77
16
89
22
2
4
70
1.17
4903456--4903488
16
2.1
16
88
11
50
18
0
6
75
1.00
4916501--4916531
14
2.1
15
94
5
55
48
0
25
25
1.52
4921011--4921036
13
2.0
13
100
0
52
84
0
0
15
0.62
4928426--4928469
21
2.2
21
80
19
58
50
13
6
29
1.68
4928434--4928476
21
2.0
21
100
0
86
44
18
9
27
1.80
4935190--4935220
14
2.1
15
94
5
55
48
0
25
25
1.52
4938853--4938881
2
14.5
2
100
0
58
48
0
0
51
1.00
4941900--4941950
26
2.0
26
88
0
75
37
21
23
17
1.94
4942048--4942104
29
2.0
29
92
0
96
36
12
29
21
1.90
4942841--4942867
9
3.0
9
100
0
54
11
22
11
55
1.66
4952736--4952779
23
1.9
24
90
9
74
22
20
2
54
1.56
4953168--4953192
13
1.9
13
100
0
50
0
8
8
84
0.79
4953443--4953492
3
16.7
3
91
8
84
64
0
0
36
0.94
4954324--4954376
20
2.7
20
85
8
65
62
3
1
32
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4955633--4955685
23
2.3
23
75
24
58
43
1
1
52
1.23
4958320--4958350
14
2.1
15
94
5
55
48
0
25
25
1.52
4967160--4967188
2
14.5
2
100
0
58
48
0
0
51
1.00
4975485--4975537
20
2.7
20
85
8
65
62
3
1
32
1.24
4976856--4976908
22
2.3
24
75
24
60
43
1
1
52
1.23
4985842--4985947
52
2.0
53
82
8
128
35
19
9
34
1.84
4992509--4992547
15
2.5
16
91
4
62
12
0
30
56
1.37
5002195--5002635
224
2.0
224
100
0
882
43
6
16
34
1.73
5003973--5004011
20
1.9
21
89
5
62
53
2
5
38
1.37
5005745--5006167
163
2.6
161
84
3
528
25
19
21
33
1.97
5006940--5006981
21
2.0
21
85
0
57
35
2
2
59
1.23
5011817--5011842
11
2.4
11
100
0
52
38
0
0
61
0.96
5011792--5011870
39
2.0
41
88
9
121
35
1
0
63
1.03
5012576--5012613
14
2.7
14
88
8
51
76
5
7
10
1.15
5014720--5014779
29
2.1
29
84
3
77
61
5
8
25
1.44
5023015--5023048
2
17.0
2
100
0
68
0
50
0
50
1.00
5025511--5025592
41
2.0
41
97
0
155
41
6
4
47
1.50
5027328--5027352
1
25.0
1
100
0
50
0
0
0
100
0.00
5034347--5034432
36
2.4
36
80
5
86
62
15
4
17
1.48
5035194--5035228
18
2.0
17
88
5
52
51
0
0
48
1.00
5035512--5035555
24
1.9
24
90
9
74
36
0
2
61
1.09
5035653--5035680
9
3.1
9
100
0
56
57
10
0
32
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5035625--5035913
68
4.2
68
98
0
551
47
8
5
38
1.58
5035721--5035748
9
3.1
9
100
0
56
57
10
0
32
1.33
5035789--5035816
9
3.1
9
100
0
56
57
10
0
32
1.33
5035857--5035884
9
3.1
9
100
0
56
57
10
0
32
1.33
5037943--5038007
31
2.1
31
94
0
112
30
16
21
30
1.96
5040712--5040750
20
1.9
21
89
5
62
56
0
5
38
1.22
5043142--5043199
28
2.0
29
93
3
100
36
5
10
48
1.60
5056147--5056173
8
3.4
8
100
0
54
44
0
0
55
0.99
5057534--5057584
20
2.5
21
84
15
72
37
7
0
54
1.29
5061898--5062011
59
1.9
60
84
8
153
31
21
17
28
1.96
5062195--5062234
5
8.0
5
83
10
55
40
20
0
40
1.52
5073206--5073267
22
2.7
24
78
9
67
46
1
1
50
1.20
5073249--5073282
16
2.1
16
94
0
59
44
0
8
47
1.34
5075162--5075209
11
4.3
11
77
15
53
29
0
12
58
1.35
5075162--5075215
17
3.2
17
72
0
54
29
1
11
57
1.44
5075521--5075856
185
1.8
186
96
1
622
34
7
15
41
1.76
5076102--5076126
10
2.5
10
100
0
50
0
60
0
40
0.97
5080516--5080582
32
2.1
33
86
8
93
43
1
1
53
1.19
5083431--5083487
30
1.9
30
89
7
89
26
12
12
49
1.75
5110769--5110806
1
38.0
1
100
0
76
0
0
0
100
0.00
5115020--5115172
80
1.9
81
98
1
299
22
20
7
49
1.75
5115803--5115859
26
2.2
26
81
6
62
42
14
8
35
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5116077--5116140
29
2.1
29
83
11
76
35
15
18
29
1.92
5118553--5118604
26
2.0
26
81
7
61
53
1
0
44
1.11
5118251--5118828
287
2.0
288
99
0
1140
48
8
5
37
1.56
5130026--5130050
7
3.6
7
100
0
50
88
0
0
12
0.53
5136476--5136545
35
2.0
35
100
0
140
31
8
20
40
1.82
5140918--5140963
18
2.5
18
89
3
74
30
0
17
52
1.45
5141000--5141063
13
4.9
13
78
14
60
34
7
14
43
1.74
5142554--5142585
15
2.1
15
94
0
55
25
0
25
50
1.50
5142777--5142826
2
25.0
2
95
0
91
48
0
2
50
1.12
5147314--5147418
33
3.2
32
82
2
111
31
13
18
37
1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163