genome.fa.s4.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  109  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35021915--35021968	11	4.9	11	90	0	90	40	0	33	25	1.56
35021912--35021990	33	2.4	33	85	8	99	45	0	30	24	1.53
35021912--35021993	11	7.5	11	82	5	58	47	0	29	23	1.52
35027441--35027475	17	2.0	18	94	5	63	74	0	0	25	0.82
35027948--35027993	7	6.6	7	82	9	58	0	26	0	73	0.83
35027949--35028005	30	2.0	28	86	6	78	0	26	0	73	0.83
35027946--35028037	6	14.8	6	81	10	62	0	27	0	72	0.84
35027997--35028038	3	14.0	3	89	0	66	0	28	0	71	0.86
35027940--35028038	15	6.6	15	75	13	69	1	26	0	72	0.91
35027946--35028037	12	7.4	12	73	22	75	0	27	0	72	0.84
35028402--35028517	30	3.9	30	69	13	87	41	5	19	33	1.74
35042589--35042616	13	2.2	13	100	0	56	46	14	14	25	1.82
35045997--35046048	24	2.1	25	92	3	88	17	17	17	48	1.82
35050557--35050717	47	3.1	55	62	18	144	38	7	5	48	1.55
35050524--35050727	101	2.0	102	99	0	401	39	7	5	47	1.57
35051091--35051144	23	2.2	25	84	12	69	37	0	3	59	1.15
35066444--35066493	26	2.0	24	84	7	64	34	2	6	58	1.34
35067248--35067411	86	1.9	87	92	1	276	40	7	21	29	1.82
35090704--35090762	31	1.9	31	85	0	82	42	8	8	40	1.66
35091965--35092008	17	2.6	17	82	10	56	65	4	2	27	1.23
35113099--35113285	94	2.0	94	90	0	293	31	23	10	34	1.88
35118500--35118554	27	2.0	27	100	0	110	30	7	25	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35118509--35118566	27	2.1	27	80	0	62	36	12	18	32	1.88
35125116--35125571	67	6.8	67	92	0	698	37	1	18	42	1.60
35125719--35125794	22	3.2	22	81	12	64	18	23	22	35	1.96
35125756--35125820	23	2.8	23	88	6	87	23	24	16	35	1.95
35132591--35132627	16	2.3	16	95	0	65	13	18	32	35	1.90
35135723--35135848	62	2.0	63	92	1	209	29	7	17	45	1.77
35136289--35136333	21	2.1	21	84	8	56	68	2	4	24	1.19
35136297--35136344	21	2.3	21	83	16	64	68	4	4	22	1.24
35136597--35136637	11	3.6	11	80	6	55	24	4	0	70	1.06
35138041--35138085	21	2.1	21	84	8	56	68	2	4	24	1.19
35138049--35138096	21	2.3	21	83	16	64	68	4	4	22	1.24
35140155--35140179	12	2.1	12	100	0	50	24	36	24	16	1.94
35142605--35142629	12	2.1	12	100	0	50	24	36	24	16	1.94
35142759--35142834	9	8.4	9	86	0	107	43	22	7	26	1.80
35144160--35144214	27	2.2	23	87	12	74	14	18	18	49	1.80
35149080--35149114	3	11.7	3	87	0	52	65	0	34	0	0.93
35155732--35155766	3	11.7	3	100	0	70	65	0	0	34	0.93
35155868--35155922	18	3.2	18	77	15	62	72	9	1	16	1.18
35155875--35155924	16	3.0	17	75	19	52	74	8	2	16	1.15
35156125--35156150	12	2.2	12	100	0	52	53	15	7	23	1.67
35160672--35160697	13	2.0	13	100	0	52	46	30	7	15	1.74
35167673--35167798	44	3.1	44	62	24	112	33	3	7	54	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35167661--35167817	77	2.0	77	95	2	280	34	3	9	52	1.52
35171817--35172189	44	8.7	41	73	12	259	27	20	20	30	1.98
35171801--35172228	129	3.3	129	92	0	671	28	20	19	31	1.97
35172342--35172596	50	5.1	50	64	3	154	26	20	21	30	1.98
35172238--35173153	100	9.2	99	87	2	1039	24	20	22	32	1.98
35172464--35172647	50	3.7	50	69	3	127	23	22	23	29	1.99
35172238--35173153	299	3.1	298	83	3	1113	24	20	22	32	1.98
35177077--35177128	19	2.7	19	79	5	61	46	13	17	23	1.83
35180229--35180268	11	3.7	11	83	6	55	77	2	2	17	0.99
35180229--35180268	16	2.5	15	88	8	53	77	2	2	17	0.99
35180229--35180268	5	7.6	5	86	8	53	77	2	2	17	0.99
35181756--35181847	38	2.4	38	85	0	121	34	22	17	25	1.96
35181793--35182083	92	3.2	92	80	3	318	36	23	14	26	1.93
35181823--35182095	91	3.0	89	75	10	257	36	22	13	26	1.92
35182722--35182774	26	2.0	26	100	0	106	41	11	3	43	1.58
35184805--35184851	21	2.2	21	96	0	85	23	4	14	57	1.55
35193431--35193482	27	1.9	27	92	0	86	15	21	34	28	1.94
35196804--35196877	31	2.4	31	86	2	105	32	10	12	44	1.76
35198108--35198135	2	14.0	2	100	0	56	50	0	0	50	1.00
35204566--35204603	19	2.0	20	85	15	53	34	0	21	44	1.52
35208712--35208736	13	1.9	13	100	0	50	32	4	24	40	1.73
35209984--35210008	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35210107--35210267	42	3.8	42	89	1	207	23	16	22	36	1.94
35210340--35210507	42	4.0	42	84	1	185	23	16	23	36	1.94
35210037--35210497	233	2.0	233	93	1	791	25	12	23	39	1.89
35212747--35212780	11	2.8	13	91	8	54	44	11	8	35	1.72
35221415--35221623	42	5.0	42	88	1	269	22	17	23	36	1.95
35236948--35237010	30	2.1	30	93	0	108	57	14	3	25	1.52
35240627--35240652	8	3.2	8	100	0	52	11	0	0	88	0.52
35244319--35244362	16	2.7	16	82	3	52	36	13	0	50	1.42
35250288--35250331	18	2.4	18	80	3	52	43	0	18	38	1.50
35252450--35252509	22	2.8	22	75	12	61	31	21	21	25	1.98
35252723--35252853	65	2.0	65	87	0	190	38	12	9	39	1.76
35257641--35257778	60	2.3	60	77	8	145	39	5	11	44	1.63
35258695--35258741	3	15.7	3	95	0	85	63	0	2	34	1.06
35263552--35263591	19	2.0	20	85	4	55	62	0	0	37	0.95
35263558--35263622	9	7.0	9	76	13	51	67	1	1	29	1.09
35263559--35263611	18	2.9	18	86	8	63	66	1	1	30	1.13
35264123--35264163	21	2.0	20	90	4	64	41	31	7	19	1.79
35267057--35267165	54	2.0	54	92	0	182	26	12	21	39	1.89
35269210--35269254	3	14.0	3	82	13	54	62	0	4	33	1.15
35270020--35270072	27	2.0	27	85	7	72	5	11	11	71	1.29
35270737--35271058	44	7.5	43	70	10	201	26	22	21	29	1.99
35270681--35271071	129	3.0	129	91	0	622	24	23	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35271408--35271698	44	6.7	44	72	8	182	27	21	18	32	1.97
35271174--35271702	218	2.4	217	85	4	665	27	21	19	31	1.98
35271708--35271965	131	2.0	131	85	4	351	23	25	22	29	1.99
35278854--35278898	17	2.6	17	89	0	72	60	2	2	35	1.22
35278853--35278898	20	2.3	20	85	7	58	60	2	2	34	1.21
35281972--35282230	124	2.1	125	98	0	502	40	14	12	32	1.84
35285411--35285470	11	5.5	11	76	7	59	16	15	11	56	1.67
35285411--35285470	22	2.7	22	78	0	66	16	15	11	56	1.67
35321608--35321635	4	7.0	4	100	0	56	25	0	0	75	0.81
35322164--35322206	22	2.0	22	86	9	61	34	20	4	39	1.74
35323393--35323504	38	2.9	38	78	5	127	36	21	10	31	1.88
35325334--35325659	165	2.0	165	91	0	535	33	19	18	28	1.95
35325602--35325765	85	1.9	86	86	3	233	26	18	22	32	1.97
35330375--35330486	38	2.9	38	78	5	127	36	21	10	31	1.88
35332708--35332754	23	2.0	23	87	0	67	36	4	4	55	1.39
35332708--35332754	22	2.1	23	84	4	60	36	4	4	55	1.39
35332843--35332932	45	2.0	46	88	2	137	43	2	1	53	1.20
35333453--35333525	37	2.0	36	86	7	103	53	2	1	42	1.23
35344532--35344624	42	2.2	43	80	7	109	31	26	16	25	1.96
35344505--35344624	43	2.8	42	79	3	116	30	27	15	25	1.96
35344601--35344654	26	2.1	26	92	0	90	33	20	12	33	1.91
35359129--35359167	20	2.0	19	85	5	51	5	20	0	74	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35359114--35359172	29	2.0	29	80	6	66	5	22	0	72	1.03
35361903--35361974	36	2.0	36	100	0	144	36	0	36	27	1.57
35367775--35367816	20	2.1	20	100	0	84	28	9	14	47	1.75
35377310--35377404	37	2.5	38	80	8	97	52	3	3	41	1.33
35380903--35380943	17	2.4	16	88	8	55	56	2	0	41	1.13
35380902--35380948	9	5.3	9	76	5	51	55	2	0	42	1.12
35389610--35389647	19	2.1	17	90	9	58	23	7	2	65	1.32
35389614--35389659	19	2.6	18	83	10	58	32	4	2	60	1.28
35395397--35395424	14	2.0	14	100	0	56	7	28	0	64	1.20
35395377--35395421	19	2.2	22	88	11	69	6	24	0	68	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163