genome.fa.s4.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  160  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53863489--53863534	11	4.1	11	91	2	74	17	32	0	50	1.47
53863500--53863546	22	2.1	22	84	7	60	21	34	0	44	1.52
53863522--53863634	51	2.2	51	88	3	165	30	27	0	40	1.62
53865895--53866030	25	5.6	26	75	15	130	40	0	15	44	1.47
53866032--53866139	21	4.9	23	73	13	109	46	24	4	25	1.71
53866035--53866139	44	2.4	44	91	0	183	47	24	3	23	1.68
53866392--53866739	125	2.8	123	86	4	457	32	20	15	30	1.94
53867345--53867408	24	2.7	23	75	18	58	40	0	1	57	1.08
53873013--53873049	19	1.9	19	100	0	74	56	0	10	32	1.34
53874241--53874295	29	2.0	26	86	10	74	34	5	0	60	1.20
53874262--53874306	20	2.3	19	80	3	54	37	4	0	57	1.19
53881100--53881137	3	12.7	3	94	0	67	0	2	31	65	1.06
53884405--53884455	15	3.4	15	94	0	93	5	27	37	29	1.80
53887115--53887360	123	2.0	123	99	0	485	35	20	14	29	1.93
53889291--53889358	33	2.1	33	91	0	109	30	16	23	29	1.96
53892901--53893015	60	1.9	59	82	8	144	24	24	17	33	1.96
53893043--53893166	62	2.0	61	84	7	162	44	17	16	20	1.87
53903768--53903801	17	2.1	16	88	5	50	67	2	2	26	1.19
53915137--53915213	10	7.8	10	68	17	54	27	2	2	67	1.17
53923217--53923258	22	1.9	22	85	0	57	61	4	7	26	1.42
53925818--53926643	413	2.0	413	98	0	1589	28	18	30	23	1.98
53928420--53928485	33	2.0	33	93	0	114	27	34	10	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53933673--53933726	22	2.5	22	85	8	67	64	9	18	7	1.45
53933684--53933726	21	2.0	22	86	4	61	67	9	16	6	1.40
53934408--53934441	17	1.9	18	88	5	52	50	8	0	41	1.34
53948388--53948712	162	2.0	162	97	1	616	26	16	24	32	1.96
53956635--53956675	21	2.0	21	85	9	57	41	21	21	14	1.89
53960010--53960034	10	2.5	10	100	0	50	92	0	0	8	0.40
53966150--53966452	150	2.0	150	98	0	579	27	29	12	31	1.92
53970644--53970710	31	2.2	31	83	0	89	31	1	7	59	1.34
53971859--53971937	19	4.2	19	72	15	67	51	2	2	43	1.28
53972457--53972501	22	2.1	21	84	8	56	26	4	4	64	1.32
53975621--53976102	167	2.9	167	97	0	919	23	24	25	27	2.00
53980273--53980331	23	2.4	23	81	13	57	66	5	5	23	1.32
53982247--53982280	2	17.5	2	93	6	61	50	0	0	50	1.00
53983489--53983528	21	1.9	21	85	10	55	75	10	15	0	1.05
53984104--53984143	16	2.5	15	84	8	53	27	0	0	72	0.85
53996181--53996220	22	1.9	22	90	10	66	50	0	0	50	1.00
53997059--53997531	236	2.0	237	99	0	939	36	18	12	33	1.88
53999183--53999213	16	1.9	16	93	0	53	58	0	0	41	0.98
54003503--54003571	32	2.1	33	97	2	131	44	13	8	33	1.74
54012845--54012954	57	1.9	56	81	5	132	54	0	2	41	1.21
54017537--54017576	3	13.3	3	89	0	53	25	0	40	35	1.56
54022933--54022978	18	2.6	18	82	0	56	47	0	2	50	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54029973--54030033	30	2.0	30	100	0	122	29	6	6	57	1.49
54032952--54032995	23	2.0	22	90	4	70	43	6	4	45	1.51
54037919--54037985	26	2.6	27	85	7	102	70	0	0	29	0.88
54038953--54039036	36	2.3	36	84	13	102	47	8	10	33	1.68
54038938--54039095	18	8.2	20	68	20	81	44	8	11	34	1.72
54038936--54039095	17	8.4	19	69	19	93	45	8	11	34	1.71
54038988--54039124	61	2.3	59	79	9	143	43	8	10	36	1.71
54039498--54039551	7	7.3	7	78	17	56	0	18	0	81	0.69
54039501--54039555	9	7.0	8	80	15	62	0	18	0	81	0.68
54039499--54039552	16	3.5	16	87	7	85	0	18	0	81	0.69
54039637--54039696	23	2.5	25	81	10	79	5	25	40	30	1.77
54039999--54040059	29	2.1	29	81	6	70	44	4	18	32	1.71
54040316--54040356	11	3.8	11	75	18	50	63	0	26	9	1.25
54040362--54040406	22	2.2	20	88	8	63	75	2	8	13	1.13
54040579--54040604	13	2.0	13	100	0	52	30	7	15	46	1.74
54042960--54042992	2	16.5	2	100	0	66	51	0	0	48	1.00
54047812--54047846	15	2.4	14	95	4	61	77	2	0	20	0.90
54050395--54050425	2	15.5	2	93	0	53	48	0	0	51	1.00
54053592--54053643	12	4.3	12	82	4	61	17	3	0	78	0.89
54053606--54053649	22	2.0	22	82	13	54	15	6	2	75	1.12
54055549--54055573	2	12.5	2	100	0	50	52	0	0	48	1.00
54059826--54059903	16	4.8	17	77	13	83	48	3	3	43	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54062249--54062458	24	8.8	24	82	0	231	13	34	23	28	1.93
54062249--54062458	72	2.9	72	82	0	258	13	34	23	28	1.93
54062249--54062458	48	4.4	48	87	0	276	13	34	23	28	1.93
54062285--54062481	48	4.1	48	86	1	135	14	31	24	28	1.95
54062552--54062616	24	2.7	24	82	0	76	13	30	24	30	1.94
54062683--54062809	24	5.3	24	80	3	139	13	37	22	26	1.91
54062683--54062811	48	2.7	48	92	0	213	13	37	21	27	1.90
54062891--54062949	24	2.5	24	78	10	75	20	27	22	30	1.98
54067879--54067923	22	2.0	22	86	0	63	55	11	6	26	1.59
54076439--54076488	18	2.8	17	79	11	55	52	4	10	34	1.54
54082155--54082335	44	4.1	44	99	0	355	49	16	12	22	1.78
54085961--54086287	163	2.0	164	99	0	647	42	7	6	43	1.58
54092150--54092192	15	2.8	15	89	3	59	32	0	2	65	1.06
54105982--54106031	22	2.3	22	92	0	82	28	20	16	36	1.93
54109685--54109717	9	3.7	9	84	15	50	45	18	9	27	1.79
54109779--54109817	18	2.2	17	95	4	69	58	10	2	28	1.44
54110488--54110537	14	3.6	14	72	17	50	10	8	14	68	1.40
54115590--54115819	121	1.9	121	100	0	460	27	17	24	30	1.97
54117982--54118035	25	2.2	24	80	6	65	51	1	0	46	1.11
54117846--54118163	158	2.0	159	99	0	629	42	13	6	37	1.71
54129410--54129435	12	2.2	12	100	0	52	7	30	7	53	1.57
54142309--54142615	151	2.0	151	98	0	587	31	8	13	46	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54149264--54149315	19	2.7	20	75	16	56	57	1	7	32	1.38
54152925--54153190	91	2.9	90	81	7	299	40	20	8	30	1.82
54153269--54153575	29	10.9	27	69	22	170	61	0	2	35	1.08
54153232--54153582	84	4.2	84	100	0	702	62	0	2	34	1.09
54169964--54169999	16	2.2	16	100	0	72	47	0	0	52	1.00
54190819--54190889	30	2.2	32	79	18	78	35	1	2	60	1.20
54197714--54197756	19	2.3	19	80	19	54	65	0	11	23	1.25
54237116--54237218	42	2.5	40	75	10	100	36	4	10	47	1.60
54237177--54237359	96	1.9	96	95	0	330	31	5	11	51	1.60
54237919--54237964	24	1.9	24	86	0	65	0	36	0	63	0.95
54245643--54245708	29	2.3	27	80	17	71	42	9	4	43	1.56
54252218--54252255	17	2.2	18	86	13	53	2	21	0	76	0.91
54256974--54257040	10	7.0	9	73	15	55	23	1	2	71	1.08
54256984--54257040	20	2.8	20	78	7	62	24	1	3	70	1.13
54257339--54257381	19	2.3	18	80	4	50	34	0	2	62	1.08
54262001--54262062	33	1.9	32	87	6	90	33	8	11	46	1.69
54267004--54267036	16	2.1	16	94	0	57	48	0	27	24	1.51
54268666--54268702	16	2.3	16	100	0	74	32	35	8	24	1.85
54271435--54271472	2	19.0	2	100	0	76	50	0	0	50	1.00
54273230--54273256	2	13.5	2	100	0	54	48	0	0	51	1.00
54277790--54277829	4	10.0	4	84	10	55	75	0	25	0	0.81
54277796--54277840	20	2.3	20	80	3	56	68	0	31	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54279721--54279754	17	2.0	17	88	0	50	29	11	11	47	1.76
54280287--54280591	151	2.0	152	97	2	578	41	12	5	40	1.66
54280525--54280578	26	2.1	26	82	6	65	48	0	0	51	1.00
54290110--54290175	18	3.7	18	78	8	62	16	42	15	25	1.87
54293429--54293458	4	7.5	4	100	0	60	23	0	0	76	0.78
54298506--54298600	24	4.0	24	73	0	64	20	40	16	23	1.91
54298587--54298626	18	2.2	18	90	0	62	22	32	15	30	1.94
54302400--54302464	33	2.0	32	88	5	96	13	46	3	36	1.60
54303406--54303445	20	2.0	20	90	0	62	50	12	10	27	1.72
54303426--54303468	14	3.0	15	80	10	54	41	16	6	34	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163