genome.fa.s4.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  31  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9781676--9781716	6	6.5	6	89	10	64	14	19	0	65	1.26
9784762--9784822	21	3.0	20	72	11	61	22	31	14	31	1.94
9784760--9784891	41	3.2	41	85	1	176	22	29	16	31	1.96
9785012--9785044	12	2.8	12	95	0	57	15	0	27	57	1.38
9793528--9793692	48	3.5	48	99	0	323	37	12	27	22	1.90
9793776--9793825	16	3.4	16	73	21	63	68	0	0	32	0.90
9794554--9794579	13	2.0	13	100	0	52	23	7	15	53	1.67
9797226--9797260	15	2.4	15	90	4	54	48	0	8	42	1.33
9797285--9797332	10	4.9	10	76	2	53	25	6	2	66	1.26
9802612--9802649	18	2.2	17	86	13	51	73	2	18	5	1.14
9802616--9802657	18	2.3	19	84	12	52	78	2	16	2	0.96
9813628--9813727	11	9.4	11	69	17	68	24	31	2	43	1.65
9813628--9813692	22	2.9	22	84	11	80	24	32	1	41	1.64
9813652--9813751	51	2.0	51	88	4	148	26	27	2	45	1.65
9819146--9819590	125	3.5	124	85	3	586	29	22	16	31	1.96
9820314--9820364	11	4.6	11	90	4	77	21	33	0	45	1.52
9820433--9820476	11	3.9	11	80	13	54	36	0	0	63	0.95
9821471--9821501	7	4.4	7	95	0	53	32	0	12	54	1.38
9822145--9822184	18	2.2	18	95	0	71	22	32	5	40	1.76
9822613--9822660	25	1.9	25	95	0	87	43	0	16	39	1.48
9822712--9823177	23	20.6	23	90	4	716	49	24	0	26	1.54
9822712--9823177	67	6.9	68	92	3	694	49	24	0	26	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9825133--9825175	21	2.0	21	95	0	77	25	20	16	37	1.93
9826211--9826587	124	3.0	123	90	3	576	32	22	15	29	1.95
9828466--9828494	1	29.0	1	100	0	58	0	0	0	100	0.00
9834651--9834951	150	2.0	151	99	0	595	37	10	7	43	1.68
9836013--9836073	22	2.8	20	72	15	59	42	1	3	52	1.27
9839770--9839829	30	2.0	30	90	6	95	53	3	5	38	1.39
9849470--9850034	282	2.0	283	99	0	1123	33	15	13	37	1.88
9866041--9866113	36	2.0	36	100	0	146	31	19	19	30	1.96
9891309--9891371	28	2.2	29	91	2	101	31	7	4	55	1.50
9894596--9894631	15	2.5	14	91	8	63	33	0	0	66	0.92
9895897--9895924	6	4.7	6	100	0	56	14	0	0	85	0.59
9899224--9899251	11	2.5	11	100	0	56	39	0	17	42	1.50
9911931--9912008	38	2.1	35	81	11	86	32	19	12	35	1.89
9932133--9932280	64	2.3	64	86	0	206	31	22	19	27	1.98
9932228--9932273	24	1.9	24	86	0	65	32	17	19	30	1.95
9932364--9932475	42	2.7	42	84	0	134	38	19	14	27	1.91
9938900--9938951	17	3.2	16	86	7	70	44	9	17	28	1.80
9950576--9950616	19	2.2	19	91	8	66	31	9	7	51	1.62
9955170--9955211	15	2.8	15	85	0	57	42	4	19	33	1.72
9957249--9957289	19	2.2	19	91	8	66	31	9	7	51	1.62
9960624--9960653	12	2.4	13	94	5	53	0	10	3	86	0.67
9964325--9964451	51	2.5	51	83	1	148	25	15	27	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9964315--9964506	50	3.8	50	77	1	186	26	16	27	29	1.97
9965720--9965785	33	2.0	33	93	0	114	30	10	22	36	1.88
9979715--9980666	480	2.0	480	91	1	1559	24	19	19	36	1.95
9987007--9987059	25	2.1	25	82	0	61	33	0	11	54	1.36
9989364--9989510	67	2.2	67	82	2	179	23	21	38	17	1.93
10005378--10005404	14	1.9	14	100	0	54	29	14	7	48	1.71
10010544--10010756	75	2.8	76	86	2	293	34	25	16	23	1.96
10017791--10017832	21	2.0	21	85	0	57	59	4	21	14	1.53
10018228--10018274	22	2.1	22	84	4	58	14	4	8	72	1.24
10018512--10018561	25	2.0	25	92	0	82	34	10	14	42	1.78
10022637--10022872	43	5.6	43	76	7	205	36	25	15	22	1.94
10022637--10022847	85	2.5	85	88	0	307	36	25	15	23	1.93
10022637--10022873	85	2.8	84	86	2	305	36	25	15	22	1.94
10029872--10029923	20	2.6	20	78	0	59	46	1	30	21	1.62
10040927--10040966	21	1.9	21	89	0	62	27	17	15	40	1.89
10063924--10064034	43	2.6	42	77	4	125	28	18	22	30	1.97
10067785--10067944	47	3.4	47	86	0	212	36	21	14	28	1.92
10069855--10069884	15	2.0	15	93	0	51	33	23	0	43	1.54
10072796--10072835	20	2.0	20	90	9	64	45	15	0	40	1.46
10072900--10072944	22	2.0	23	82	4	56	44	13	0	42	1.43
10073905--10073951	24	1.9	24	86	4	67	36	0	38	25	1.56
10074617--10074861	27	9.1	26	83	6	256	41	22	16	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10074617--10074861	54	4.5	54	85	0	301	41	22	16	20	1.90
10076528--10076728	28	7.2	29	90	6	301	24	24	21	29	1.99
10076528--10076728	84	2.4	84	91	0	341	24	24	21	29	1.99
10094290--10094322	17	1.9	17	88	11	50	27	27	12	33	1.92
10106370--10106699	164	2.0	164	94	0	579	27	26	12	34	1.92
10107554--10107585	3	10.7	3	100	0	64	65	0	0	34	0.93
10116124--10116173	24	2.1	24	92	0	82	24	32	18	26	1.97
10116129--10116180	24	2.2	24	89	0	77	26	34	13	25	1.93
10123177--10123259	42	2.0	40	83	4	103	14	20	20	44	1.86
10123177--10123259	21	4.0	21	78	3	89	14	20	20	44	1.86
10127102--10127143	22	1.9	22	85	0	57	45	4	0	50	1.23
10137092--10137152	25	2.4	25	88	0	77	24	3	18	54	1.58
10137342--10137388	7	6.6	7	90	2	58	17	0	53	29	1.44
10137450--10137525	7	10.6	7	72	10	55	18	1	34	46	1.58
10137483--10137528	15	3.1	14	80	20	58	21	0	39	39	1.54
10139261--10139366	53	2.0	52	85	3	142	14	12	26	47	1.79
10139999--10140124	67	1.9	67	83	6	166	45	7	5	42	1.55
10139990--10140132	67	2.1	67	80	6	164	46	6	4	42	1.50
10140221--10140262	15	2.8	15	88	0	57	38	4	0	57	1.20
10140237--10140270	17	1.9	18	88	5	52	38	5	0	55	1.24
10140412--10140609	9	23.1	9	73	13	159	45	20	1	32	1.60
10140536--10140601	25	2.6	25	83	9	73	45	18	1	34	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10148366--10148394	10	2.9	10	100	0	58	31	17	31	20	1.96
10154475--10155073	44	13.8	44	69	13	267	29	19	23	27	1.98
10154389--10155199	217	3.7	217	88	1	1108	29	20	22	27	1.98
10154436--10155369	433	2.2	431	79	6	915	29	19	22	28	1.98
10160577--10160670	43	2.2	43	82	5	109	30	18	28	22	1.97
10160550--10160670	44	2.8	43	76	6	118	31	19	26	23	1.98
10160645--10160845	85	2.4	84	77	4	208	28	19	21	30	1.98
10160605--10160838	42	5.6	41	71	8	141	28	19	23	28	1.98
10163551--10163665	38	3.0	38	79	2	115	16	20	26	37	1.93
10169926--10170009	25	3.4	24	82	8	98	28	17	5	47	1.71
10173951--10174147	100	2.0	100	90	0	313	32	19	18	28	1.96
10177045--10177125	26	3.1	26	73	7	83	32	20	22	24	1.98
10184777--10184853	26	3.0	26	94	0	127	35	24	22	18	1.96
10186899--10186942	23	1.9	23	95	0	79	47	25	0	27	1.52
10190254--10190283	7	4.3	7	100	0	60	13	56	0	30	1.37
10211591--10211624	10	3.4	10	87	0	50	61	29	2	5	1.34
10216234--10216284	18	2.7	18	74	17	50	58	11	0	29	1.33
10221796--10221829	17	2.0	17	88	0	50	41	0	14	44	1.45
10222822--10222862	21	2.0	21	85	0	55	36	7	12	43	1.70
10223167--10223206	20	2.0	20	90	9	64	37	17	5	40	1.72
10225779--10225898	45	2.7	45	84	5	163	35	23	15	25	1.94
10225779--10225943	90	1.8	90	82	2	215	35	22	14	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10231358--10231499	50	2.8	50	80	10	173	32	23	16	28	1.96
10231358--10231599	101	2.4	100	84	5	292	30	24	17	26	1.97
10234649--10234701	22	2.5	20	80	19	63	28	11	22	37	1.89
10234656--10234701	22	2.0	22	91	8	74	30	10	21	36	1.88
10250878--10251060	101	1.8	102	87	3	280	25	16	26	31	1.97
10250868--10251058	51	3.8	51	77	11	212	25	16	26	31	1.97
10251064--10251167	46	2.3	43	79	12	111	24	19	24	32	1.97
10251285--10251316	16	2.0	16	93	0	55	59	0	15	25	1.36
10253788--10253818	15	2.1	15	93	0	53	54	9	12	22	1.67
10262092--10262131	21	1.9	21	84	0	53	17	5	0	77	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163