genome.fa.s4.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  39  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12729373--12729404	16	2.0	17	88	11	50	18	9	15	56	1.66
12730575--12730793	112	2.0	112	99	0	429	32	17	20	29	1.95
12735290--12735402	56	2.0	56	100	0	226	38	7	12	41	1.70
12735277--12735388	31	3.8	31	68	13	101	42	7	11	38	1.69
12744786--12744824	20	1.9	21	89	5	62	5	46	12	35	1.65
12744786--12744831	20	2.2	20	84	3	56	4	45	15	34	1.66
12749293--12749334	19	2.2	19	91	0	66	33	19	19	28	1.96
12749302--12749340	19	2.1	19	95	0	69	38	23	17	20	1.93
12755063--12755116	25	2.2	25	89	0	81	48	1	27	22	1.61
12755292--12755423	41	3.2	40	69	12	106	23	17	21	37	1.94
12765151--12765192	19	2.3	19	95	4	77	71	0	2	26	0.98
12766166--12766228	23	2.6	25	85	12	94	30	3	6	60	1.37
12766228--12766300	38	2.0	34	84	10	92	45	0	1	53	1.09
12771290--12771368	27	2.9	27	81	3	79	22	24	16	36	1.94
12772439--12772649	101	2.1	101	83	3	264	28	9	10	50	1.69
12773039--12773240	96	2.1	96	89	4	309	34	27	7	29	1.85
12781624--12781807	100	1.8	100	84	4	253	23	18	27	30	1.98
12784108--12784132	5	5.0	5	100	0	50	20	0	0	80	0.72
12791392--12791424	16	2.1	16	94	0	57	84	0	15	0	0.61
12793301--12793356	29	1.9	29	88	0	85	25	1	16	57	1.49
12793300--12793370	29	2.5	29	78	15	76	22	4	14	59	1.52
12793398--12793453	16	3.5	16	90	0	76	41	1	32	25	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12800971--12801176	103	2.0	103	98	0	394	17	28	21	31	1.97
12814692--12814722	3	10.0	3	93	6	53	0	32	0	67	0.91
12822160--12822190	14	2.1	15	94	5	55	38	32	0	29	1.57
12822489--12822619	41	3.2	40	83	5	156	29	25	22	22	1.99
12825735--12825793	29	2.0	30	83	3	75	30	6	15	47	1.71
12825740--12825802	29	2.1	29	82	8	74	31	9	12	46	1.74
12837795--12837847	26	2.0	26	85	7	72	47	0	3	49	1.19
12843618--12843647	14	2.1	14	93	0	51	13	10	0	76	1.01
12846816--12846939	43	2.9	43	79	4	142	20	18	29	31	1.97
12853352--12853412	30	2.0	30	96	0	113	34	3	18	44	1.66
12854211--12854312	51	2.0	51	96	0	186	32	30	4	32	1.79
12857229--12857253	13	1.9	13	100	0	50	28	16	16	40	1.89
12858951--12859375	138	3.1	137	89	2	634	40	9	5	44	1.58
12863124--12863259	46	3.0	46	94	0	245	35	9	25	29	1.88
12864256--12864325	33	2.1	33	89	0	104	11	8	12	67	1.43
12868454--12868507	19	2.8	19	97	0	99	25	0	51	22	1.48
12868456--12868513	19	3.1	19	92	0	71	25	1	50	22	1.59
12872180--12872411	109	2.2	104	84	9	299	24	28	7	39	1.83
12878240--12878283	21	2.2	20	87	4	61	34	9	0	56	1.31
12879414--12879511	46	2.1	47	83	7	121	65	6	2	26	1.27
12888064--12888296	57	4.1	57	97	1	436	35	8	21	35	1.83
12888404--12889096	365	1.9	364	85	5	954	36	8	17	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12889999--12890027	14	2.1	14	93	6	51	58	0	0	41	0.98
12890579--12890612	14	2.5	14	90	4	52	50	32	0	17	1.47
12894308--12894337	2	15.0	2	92	0	51	50	3	0	46	1.18
12905130--12905473	161	2.1	159	86	5	444	28	22	8	40	1.83
12908837--12908896	27	2.2	27	93	0	102	43	8	0	48	1.33
12908954--12909032	27	2.9	27	94	0	131	29	25	31	13	1.94
12909063--12909196	4	34.0	4	72	21	74	69	0	30	0	0.89
12909063--12909196	18	7.4	18	74	17	109	69	0	30	0	0.89
12909068--12909262	36	5.2	36	76	15	166	69	0	30	0	0.89
12909141--12909234	3	33.3	3	70	16	51	69	0	30	0	0.89
12909094--12909260	78	2.2	78	95	3	302	70	0	29	0	0.87
12909067--12909236	24	7.0	24	71	15	93	68	0	31	0	0.90
12909098--12909243	42	3.6	40	78	14	165	68	0	31	0	0.90
12914406--12914444	19	2.0	21	85	10	55	69	12	0	17	1.19
12914581--12914680	27	3.7	27	82	0	119	17	30	24	29	1.97
12914738--12914796	26	2.3	26	96	0	109	50	0	5	44	1.24
12915089--12915136	25	1.9	25	95	0	87	52	0	8	39	1.32
12931025--12931076	27	1.9	27	84	0	68	38	3	9	48	1.54
12932124--12932168	22	2.0	22	86	4	63	48	0	0	51	1.00
12937251--12937291	21	2.0	21	90	0	64	21	19	29	29	1.98
12937662--12937698	16	2.2	17	95	4	67	16	0	24	59	1.37
12937696--12937753	28	2.1	27	87	6	82	15	3	17	63	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12941746--12941871	63	2.0	63	93	0	216	34	20	17	26	1.95
12941809--12941947	41	3.4	41	92	0	233	31	20	17	29	1.96
12943950--12944199	80	3.2	77	85	5	315	19	7	25	48	1.74
12944190--12944243	28	1.9	28	84	0	72	31	11	14	42	1.81
12945436--12945481	23	2.0	24	91	4	76	45	4	23	26	1.71
12946087--12946122	17	2.1	17	89	0	54	2	36	0	61	1.11
12947747--12947804	19	2.7	22	84	10	68	36	8	17	37	1.80
12951255--12951300	23	2.0	23	95	0	83	41	8	0	50	1.33
12951370--12951439	27	2.6	27	93	4	115	27	28	28	15	1.96
12951482--12951614	4	33.0	4	75	15	107	68	0	31	0	0.90
12951517--12951649	39	3.5	38	84	12	168	69	0	30	0	0.88
12951491--12951649	83	2.0	80	84	13	209	68	0	31	0	0.90
12951503--12951628	14	9.0	15	73	19	87	67	0	32	0	0.91
12951516--12951648	44	3.2	44	77	20	151	69	0	30	0	0.89
12951563--12951680	39	3.5	34	82	13	129	68	0	31	0	0.90
12952398--12952906	162	3.2	162	72	14	580	48	8	12	30	1.71
12952204--12952974	160	4.8	161	71	13	611	49	8	12	29	1.70
12952239--12952735	159	3.1	159	72	14	550	49	7	12	30	1.68
12952204--12952995	321	2.5	321	96	0	1426	48	8	11	31	1.70
12954963--12955032	34	2.1	34	94	0	122	38	11	10	40	1.75
12958023--12958069	3	15.7	3	93	0	76	63	31	2	2	1.18
12958136--12958174	20	2.0	21	85	10	55	66	10	0	23	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12958317--12958374	27	2.1	27	96	0	107	17	31	29	22	1.96
12968056--12968100	6	7.2	6	80	9	54	26	0	0	73	0.84
12968045--12968104	20	3.0	20	85	4	77	26	1	1	70	1.07
12971013--12971043	12	2.6	12	94	0	53	6	29	41	22	1.78
12972143--12972249	50	2.2	48	81	11	119	32	25	21	20	1.97
12972143--12972252	25	4.5	24	73	16	100	32	24	22	20	1.97
12975009--12975051	15	2.9	15	79	3	52	37	6	0	55	1.27
12989010--12989045	16	2.2	17	90	5	56	36	2	0	61	1.11
12990640--12990709	26	2.7	26	76	17	65	47	4	2	45	1.37
13017217--13017258	21	2.0	21	95	0	75	47	16	14	21	1.82
13028569--13028597	10	2.7	11	94	5	51	51	3	0	44	1.18
13029170--13029238	30	2.3	30	80	9	79	33	5	0	60	1.20
13029167--13029245	31	2.6	30	75	11	81	34	6	0	59	1.23
13032100--13032129	16	1.9	15	93	6	51	40	20	0	40	1.52
13042047--13042151	28	3.7	28	75	5	93	38	30	15	16	1.89
13042076--13042236	30	5.6	29	71	11	125	36	31	14	18	1.91
13042047--13042237	58	3.3	58	78	2	163	37	29	14	18	1.90
13042047--13042237	29	6.6	28	72	15	115	37	29	14	18	1.90
13042624--13042655	15	2.1	15	94	0	55	12	15	6	65	1.44
13044263--13044315	25	2.2	24	83	10	63	37	1	5	54	1.35
13044460--13044534	29	2.4	32	80	8	84	18	20	17	44	1.88
13047970--13048011	9	4.6	9	88	11	59	21	2	21	54	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13047963--13048031	24	3.0	24	84	14	85	18	2	20	57	1.52
13050260--13050372	41	2.8	41	83	0	136	23	25	15	36	1.93
13051485--13051522	20	1.9	20	94	0	67	28	21	36	13	1.91
13053583--13053614	13	2.4	14	89	10	57	15	0	25	59	1.36
13057513--13057587	27	2.8	27	75	13	75	40	10	17	32	1.84
13065384--13065422	21	1.9	21	89	5	62	30	5	15	48	1.66
13065785--13065815	16	1.9	16	100	0	62	32	22	6	38	1.80
13068375--13068456	25	3.3	24	80	11	103	18	24	21	35	1.96
13068375--13068483	50	2.2	51	88	8	163	20	22	22	34	1.96
13068385--13068462	25	3.2	25	81	15	108	19	24	24	32	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163