genome.fa.s4.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  113  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36402407--36402593	43	4.4	43	75	6	137	24	16	28	31	1.96
36404495--36404545	17	3.2	16	78	8	59	3	13	3	78	1.03
36406586--36406647	28	2.2	28	94	0	106	43	11	35	9	1.73
36407693--36407731	20	2.0	20	95	5	71	51	2	5	41	1.38
36407774--36407822	5	10.0	5	86	4	55	73	2	6	18	1.14
36407780--36407822	10	4.4	10	88	2	61	74	0	6	18	1.04
36408785--36408824	13	2.9	14	85	7	55	62	0	10	27	1.27
36409175--36409237	21	2.9	22	88	4	76	15	23	25	34	1.95
36409192--36409237	21	2.2	21	96	0	83	17	30	23	28	1.97
36409192--36409248	21	2.8	21	89	2	71	17	24	24	33	1.96
36432925--36432958	17	2.0	17	94	0	59	26	20	23	29	1.99
36440028--36440052	12	2.1	12	100	0	50	32	8	16	44	1.76
36443074--36443113	18	2.1	19	90	9	64	50	2	0	47	1.14
36443062--36443119	20	2.6	23	74	23	61	50	1	0	48	1.11
36451984--36452009	2	13.0	2	100	0	52	50	0	0	50	1.00
36460487--36460552	26	2.6	26	83	4	91	36	9	10	43	1.71
36461061--36461114	16	3.3	15	80	15	54	25	1	1	70	1.07
36461061--36461150	19	5.1	17	73	17	62	26	4	1	67	1.16
36463260--36463313	27	2.0	27	82	3	65	62	7	3	25	1.38
36466581--36466647	34	1.9	35	93	3	118	46	11	8	32	1.72
36472141--36472340	45	4.3	45	77	8	159	28	20	19	33	1.96
36472303--36472798	262	1.9	262	92	0	839	28	18	20	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36484182--36484287	41	2.6	41	90	0	167	31	24	17	26	1.97
36485283--36485314	2	16.0	2	100	0	64	50	0	0	50	1.00
36487629--36487667	17	2.2	18	90	4	62	69	2	0	28	1.02
36487871--36487939	27	2.6	27	97	0	129	40	2	28	27	1.71
36490633--36490673	22	2.0	20	85	9	55	56	0	7	36	1.27
36493778--36493838	27	2.3	27	83	8	72	18	11	4	65	1.42
36494088--36494118	2	15.5	2	100	0	62	0	48	0	51	1.00
36496255--36496447	42	4.6	42	80	5	194	44	17	21	17	1.87
36496319--36496427	21	5.2	21	67	0	74	43	18	20	18	1.89
36496375--36496447	21	3.5	20	71	3	56	47	17	19	15	1.82
36513058--36513136	40	2.0	40	92	0	131	48	21	12	17	1.80
36514119--36514197	40	2.0	40	97	0	149	17	11	22	48	1.79
36514593--36514812	114	1.9	115	91	0	361	33	18	20	27	1.96
36514596--36514851	114	2.2	114	86	3	345	32	19	19	28	1.96
36514795--36515073	139	2.0	140	83	0	353	31	20	19	29	1.97
36515240--36515300	28	2.1	29	82	8	72	22	1	21	54	1.54
36515452--36515660	7	29.7	7	69	4	71	22	2	30	44	1.65
36515620--36515660	15	2.8	15	85	3	57	14	0	34	51	1.43
36515614--36515658	22	2.0	22	91	0	72	15	0	31	53	1.43
36517855--36517964	43	2.5	45	83	7	143	37	4	11	46	1.61
36518212--36518241	9	3.4	9	90	9	53	50	16	0	33	1.46
36518337--36518382	19	2.3	21	85	10	62	41	6	2	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36518531--36518750	9	24.9	9	76	13	163	46	15	0	37	1.50
36518531--36518750	17	12.4	18	71	13	163	46	15	0	37	1.50
36518531--36518583	24	2.1	25	86	6	72	50	13	0	35	1.41
36518538--36518692	63	2.5	60	88	5	213	47	16	0	35	1.51
36527462--36527574	43	2.6	43	81	2	129	27	20	25	26	1.99
36528236--36528347	49	2.4	47	79	5	129	29	16	8	46	1.75
36538349--36538391	14	3.1	14	79	0	50	62	2	2	32	1.20
36545372--36545456	30	2.8	29	87	7	116	45	7	20	27	1.76
36549810--36549893	15	5.5	15	73	12	73	45	7	16	30	1.74
36549802--36549888	30	2.9	30	91	0	129	45	6	18	28	1.75
36552961--36552999	19	2.1	19	95	0	69	48	10	12	28	1.74
36569623--36569726	43	2.4	43	78	12	115	19	14	25	40	1.89
36577215--36577321	53	2.0	53	100	0	214	35	29	11	23	1.90
36585966--36585999	16	2.1	17	89	10	54	11	11	20	55	1.67
36591216--36591262	6	7.7	6	85	7	51	44	14	2	38	1.58
36596155--36596241	40	2.2	40	81	4	95	27	16	20	35	1.94
36596173--36596311	41	3.4	40	84	6	172	24	15	26	33	1.95
36596568--36596667	42	2.4	42	93	0	164	36	10	28	26	1.88
36598763--36598801	11	3.8	11	80	19	57	58	25	10	5	1.51
36598763--36598800	19	2.0	19	100	0	76	57	26	10	5	1.53
36599345--36599530	37	4.9	38	68	12	98	52	6	0	39	1.32
36599341--36599566	112	2.0	113	99	0	445	50	7	0	41	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36607139--36607188	24	2.2	22	82	10	57	62	10	14	14	1.55
36609845--36609872	1	28.0	1	100	0	56	0	100	0	0	0.00
36610420--36610455	18	2.0	18	88	0	54	61	11	2	25	1.43
36616755--36616866	28	4.0	28	100	0	224	21	14	14	50	1.78
36619943--36620011	31	2.4	27	75	13	66	46	10	7	36	1.65
36623664--36623694	13	2.3	14	94	5	55	16	0	0	83	0.64
36624204--36624276	31	2.4	31	79	16	82	49	1	5	43	1.34
36625910--36625945	18	2.0	18	88	0	54	19	16	0	63	1.30
36627623--36627681	21	2.8	21	78	0	64	40	0	25	33	1.56
36632295--36632361	34	1.9	35	87	3	100	31	8	14	44	1.76
36637418--36637591	43	4.0	43	78	3	163	38	20	15	25	1.92
36637445--36637595	43	3.5	43	76	8	164	39	19	15	25	1.91
36639496--36639526	16	1.9	16	93	0	53	54	0	6	38	1.26
36645994--36646059	33	2.0	33	100	0	132	54	6	18	21	1.64
36647031--36647061	16	1.9	16	100	0	62	51	0	3	45	1.17
36647094--36647134	21	2.0	21	85	4	57	60	4	0	34	1.18
36648068--36648122	7	7.9	7	80	8	58	43	40	1	14	1.56
36648830--36649156	112	2.9	110	70	13	252	25	19	24	30	1.98
36650234--36650314	34	2.4	34	76	15	89	51	6	13	28	1.65
36655119--36655194	31	2.4	32	80	2	91	53	5	6	34	1.49
36662799--36662854	22	2.5	23	94	2	96	48	7	8	35	1.62
36662812--36662866	22	2.3	23	81	12	67	61	5	7	25	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36663555--36663610	28	2.0	28	82	0	67	42	12	0	44	1.42
36664027--36664114	45	2.0	45	88	4	133	40	19	17	22	1.91
36670313--36670355	15	2.9	15	92	0	68	27	32	0	39	1.57
36687718--36687879	80	2.0	81	98	1	317	51	13	3	31	1.59
36695108--36695669	281	2.0	280	94	0	989	33	16	16	34	1.90
36695388--36698646	755	4.3	750	89	2	4881	34	15	13	35	1.88
36699094--36699120	10	2.7	10	100	0	54	18	0	18	62	1.32
36699941--36699973	7	5.0	7	89	10	52	24	0	0	75	0.80
36699954--36699995	19	2.2	19	86	0	57	21	4	0	73	1.01
36699941--36699996	25	2.2	24	84	9	76	21	3	0	75	0.96
36703450--36703593	27	5.3	27	78	7	116	40	22	17	20	1.91
36703446--36703771	54	6.0	55	77	7	145	36	20	20	22	1.95
36703451--36703648	81	2.4	83	81	8	214	38	22	18	21	1.93
36703561--36703789	27	8.5	27	84	0	271	32	20	22	24	1.98
36703591--36703789	81	2.5	81	90	0	317	32	19	22	25	1.98
36704279--36704360	24	3.5	24	81	5	78	19	4	25	50	1.68
36704476--36704533	26	2.2	26	78	0	62	20	17	24	37	1.93
36704532--36704787	32	8.0	31	78	5	226	19	20	22	37	1.95
36704550--36704780	96	2.4	96	83	2	286	20	20	23	35	1.96
36707887--36707956	5	13.0	5	84	11	61	14	1	4	80	0.94
36707888--36707956	6	11.5	6	82	15	65	13	1	4	81	0.91
36724739--36724904	81	2.1	81	96	1	307	27	31	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36728310--36728342	16	2.1	16	100	0	66	24	12	12	51	1.73
36736360--36736483	40	3.1	40	88	0	185	16	16	25	41	1.88
36736368--36736498	40	3.4	38	81	6	104	16	14	26	42	1.86
36739328--36739877	274	2.0	274	94	0	974	32	24	11	32	1.91
36744281--36744525	122	2.0	122	100	0	490	44	13	13	28	1.82
36745021--36745068	18	2.7	18	83	6	53	14	8	6	70	1.31
36764918--36764963	24	1.9	24	82	8	58	47	4	8	39	1.54
36765071--36765121	21	2.4	21	93	0	84	37	31	0	31	1.58
36765392--36765459	34	2.0	34	100	0	136	41	26	0	32	1.56
36772306--36772330	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163