genome.fa.s4.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  134  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43514151--43514202	24	2.2	24	85	0	68	48	11	3	36	1.58
43518164--43518215	24	2.2	24	89	0	77	50	9	3	36	1.54
43533171--43533199	2	14.5	2	100	0	58	48	0	0	51	1.00
43534134--43534278	41	3.5	41	95	0	254	26	22	28	22	1.99
43538389--43538426	20	1.9	19	85	15	51	47	7	0	44	1.32
43546613--43546660	17	2.9	17	90	3	71	27	0	18	54	1.44
43547751--43547890	46	3.0	46	88	0	208	36	6	26	30	1.82
43548371--43548400	12	2.5	12	100	0	60	40	6	10	43	1.64
43549245--43549289	22	2.0	23	91	4	74	40	20	8	31	1.83
43549322--43549779	228	2.0	228	93	0	774	43	7	21	27	1.79
43558421--43558473	23	2.3	23	90	0	88	22	20	24	32	1.98
43560372--43560405	13	2.6	13	95	0	59	20	29	32	17	1.96
43563082--43563122	20	2.0	21	85	4	57	39	0	12	48	1.41
43564843--43564895	25	2.1	25	85	0	70	16	24	24	33	1.96
43564890--43564946	22	2.6	23	83	8	73	15	21	19	43	1.87
43567527--43567557	1	31.0	1	100	0	62	0	100	0	0	0.00
43568124--43568173	25	2.0	25	84	7	66	34	2	8	56	1.40
43573812--43573859	22	2.3	20	83	16	62	35	0	0	64	0.94
43575370--43575433	23	2.6	24	75	12	58	29	6	0	64	1.18
43577004--43577296	42	7.0	41	82	4	354	31	23	18	26	1.98
43577026--43577296	83	3.3	83	95	2	499	31	23	18	26	1.97
43577655--43577694	21	1.9	21	94	0	71	2	45	17	35	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43577658--43577725	33	2.1	33	94	0	118	5	41	16	36	1.72
43577682--43577706	12	2.1	12	100	0	50	0	44	16	40	1.47
43589830--43590138	115	2.7	113	78	6	300	29	22	19	29	1.98
43607481--43607510	15	2.0	15	93	0	51	23	16	20	40	1.91
43610397--43610436	20	2.0	20	90	0	62	45	10	10	35	1.71
43615849--43615918	31	2.3	31	85	4	90	38	10	11	40	1.75
43619920--43619987	8	8.8	8	80	6	50	27	0	0	72	0.85
43619936--43620012	18	4.2	18	83	5	84	24	0	2	72	0.97
43619933--43619986	26	2.1	26	89	0	81	22	0	0	77	0.76
43619919--43619992	10	7.8	10	75	11	66	28	0	1	70	0.96
43619920--43620014	46	2.1	46	81	0	109	28	0	2	69	1.00
43620203--43620236	17	2.1	17	88	5	52	14	17	2	64	1.40
43622662--43622882	112	2.0	113	82	6	270	43	2	10	43	1.53
43627384--43627671	44	6.7	43	72	11	169	27	23	21	28	1.99
43627387--43627628	130	1.9	131	83	4	319	27	23	21	27	1.99
43629328--43629360	11	3.0	11	91	8	50	3	18	0	78	0.87
43629379--43629425	14	3.4	14	80	11	60	17	0	8	74	1.05
43629380--43629427	8	6.5	8	77	18	50	14	0	8	77	0.99
43629380--43629435	28	2.1	27	86	6	78	16	0	7	76	0.99
43630196--43630261	25	2.6	25	80	9	71	60	6	13	19	1.54
43636131--43636178	12	4.4	11	79	15	55	62	2	0	35	1.07
43636128--43636178	15	3.3	15	81	10	66	62	1	0	35	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43648624--43648837	105	2.0	106	98	0	412	37	3	12	46	1.59
43664227--43664569	109	3.2	108	89	6	547	31	15	19	33	1.93
43664227--43664569	106	3.2	106	91	3	546	31	15	19	33	1.93
43666906--43667218	103	3.0	105	81	4	308	39	19	14	26	1.90
43666871--43667226	110	3.3	107	80	5	418	36	20	14	28	1.92
43668386--43669354	109	8.6	108	77	14	795	30	13	19	36	1.90
43668722--43668967	134	1.8	134	92	1	413	31	13	18	36	1.89
43668611--43669071	240	1.9	244	87	3	689	31	12	19	36	1.89
43669168--43669389	108	2.0	109	81	4	252	38	13	16	31	1.88
43671586--43671676	47	2.0	46	91	2	146	30	20	18	29	1.97
43672512--43672539	2	14.0	2	100	0	56	0	50	0	50	1.00
43674739--43674787	24	2.0	24	96	0	89	28	32	20	18	1.96
43676103--43676133	3	10.7	3	93	6	55	32	0	0	67	0.91
43681026--43681052	6	4.5	6	100	0	54	33	0	51	14	1.43
43681793--43681905	57	2.0	60	84	10	155	30	16	23	29	1.96
43682123--43682334	111	1.9	112	86	3	300	33	16	15	34	1.90
43683355--43683770	110	3.8	108	84	5	561	30	14	17	37	1.90
43686355--43686410	29	1.9	29	100	0	112	37	16	7	39	1.76
43688859--43688924	34	2.0	33	87	3	96	37	43	4	13	1.65
43692962--43693117	42	3.7	42	80	0	152	17	21	17	44	1.87
43708260--43708301	19	2.2	19	87	8	59	33	26	0	40	1.56
43708405--43708544	40	3.6	39	75	10	133	30	24	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43708434--43708545	37	2.8	41	76	9	124	33	24	16	25	1.95
43709425--43709464	20	2.0	20	90	0	62	0	35	0	65	0.93
43709437--43709469	16	2.2	15	89	10	50	0	24	0	75	0.80
43709474--43709507	5	7.0	5	93	6	61	58	0	0	41	0.98
43710360--43710390	16	1.9	16	93	0	53	51	3	0	45	1.17
43722194--43722393	100	2.0	100	100	0	400	46	5	18	31	1.70
43725039--43725208	74	2.3	74	100	0	340	31	0	13	54	1.39
43725082--43725207	42	3.2	41	68	21	126	31	0	13	54	1.39
43725307--43725390	27	3.1	27	89	0	123	21	36	23	17	1.94
43727368--43727448	40	2.0	40	100	0	162	29	12	23	34	1.91
43729448--43729502	24	2.3	24	78	9	60	38	7	3	50	1.48
43731643--43731752	57	1.9	57	100	0	220	52	5	13	28	1.62
43732115--43732148	17	1.9	17	88	5	50	61	2	8	26	1.40
43732442--43732475	17	1.9	17	88	5	50	61	2	8	26	1.40
43731956--43732610	327	2.0	327	100	0	1310	37	15	19	28	1.92
43736438--43736471	15	2.3	15	94	0	59	85	11	2	0	0.71
43736771--43736796	1	26.0	1	100	0	52	0	0	0	100	0.00
43739685--43739729	24	1.9	23	86	13	65	68	4	4	22	1.25
43748009--43748045	15	2.4	16	86	9	58	67	0	0	32	0.91
43748013--43748047	15	2.3	15	95	0	61	65	0	0	34	0.93
43751824--43751865	20	2.1	20	91	8	68	57	4	4	33	1.41
43752284--43752386	7	14.9	7	68	13	52	25	4	29	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43752322--43752346	13	1.9	13	100	0	50	24	0	24	52	1.48
43752284--43752368	42	2.0	42	82	8	102	25	3	29	41	1.72
43757147--43757383	36	6.0	36	80	15	249	36	13	20	29	1.90
43757175--43757240	21	3.5	20	63	25	52	34	12	19	33	1.89
43757111--43757337	118	1.9	118	92	0	382	37	12	20	29	1.89
43757183--43757384	82	2.5	82	95	0	359	36	12	20	30	1.90
43773429--43773498	35	1.9	37	85	5	99	38	7	4	50	1.50
43774696--43774783	39	2.3	39	78	9	92	63	4	3	28	1.30
43777731--43777827	42	2.3	42	80	3	106	23	22	25	27	2.00
43787884--43787920	17	2.2	17	90	0	56	27	2	18	51	1.60
43788958--43789051	46	2.0	46	93	0	161	34	7	27	30	1.84
43790978--43791016	15	2.7	16	81	18	50	43	0	5	51	1.24
43794995--43795035	21	2.0	21	95	0	73	29	21	24	24	1.99
43797320--43797352	16	2.0	17	88	5	50	39	12	3	45	1.57
43797427--43797482	21	2.7	21	91	0	85	30	33	7	28	1.84
43801806--43801871	1	66.0	1	100	0	132	100	0	0	0	0.00
43815448--43815518	36	2.0	35	86	8	99	32	23	11	32	1.90
43821416--43821577	82	2.0	82	98	0	315	40	14	4	39	1.68
43821581--43821775	98	2.0	98	96	1	365	36	12	4	46	1.62
43822266--43822474	105	2.0	105	98	0	400	29	24	11	34	1.90
43828877--43828931	25	2.2	25	90	0	83	21	14	20	43	1.87
43828916--43828978	22	2.9	22	82	0	81	17	25	15	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43830310--43830349	21	2.0	21	85	5	55	45	0	2	52	1.14
43831671--43831729	18	3.5	18	77	15	72	49	8	0	42	1.33
43831671--43831729	16	3.6	16	73	15	57	49	8	0	42	1.33
43833370--43833457	32	2.9	32	76	20	91	34	1	1	63	1.09
43849783--43849888	25	4.3	24	80	8	106	29	22	27	20	1.99
43849783--43849937	49	3.1	49	82	2	150	32	21	27	18	1.97
43849805--43849915	25	4.5	24	76	15	84	34	21	27	17	1.95
43854454--43854478	13	1.9	13	100	0	50	68	0	0	32	0.90
43863254--43863291	19	2.0	19	90	10	60	42	26	10	21	1.85
43895415--43895459	22	2.0	23	82	4	56	26	31	2	40	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163