genome.fa.s4.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  158  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52858982--52859033	16	3.3	15	86	5	68	40	7	28	23	1.82
52859013--52859102	45	2.0	44	91	6	146	27	4	31	36	1.77
52859013--52859119	45	2.5	43	84	13	134	29	3	31	34	1.75
52859221--52859281	18	3.3	18	81	9	70	59	4	1	34	1.29
52864651--52864676	2	13.0	2	100	0	52	50	0	0	50	1.00
52874022--52874056	9	3.9	9	92	0	61	42	25	8	22	1.82
52879432--52879485	15	3.6	15	76	16	58	51	3	1	42	1.30
52884058--52884105	22	2.2	22	81	7	53	39	2	4	54	1.32
52885678--52885715	11	3.6	11	86	10	53	65	0	0	34	0.93
52887246--52887297	3	17.3	3	100	0	104	32	0	0	67	0.91
52887405--52887431	13	2.1	13	100	0	54	14	22	14	48	1.81
52888026--52888330	147	2.0	152	86	5	433	30	7	9	52	1.61
52888317--52888349	17	1.9	17	93	0	57	15	9	0	75	1.03
52888511--52888541	12	2.6	12	94	0	53	70	6	0	22	1.09
52888536--52888598	30	2.1	30	87	0	90	58	9	9	22	1.58
52889087--52889124	19	2.0	19	89	0	58	21	0	5	73	1.02
52889845--52890133	152	1.9	152	85	7	399	40	3	6	49	1.47
52893887--52893974	45	2.0	44	95	4	160	31	13	6	47	1.69
52895241--52895266	13	2.0	13	100	0	52	53	7	15	23	1.67
52898302--52898353	3	17.3	3	100	0	104	32	0	0	67	0.91
52899123--52899174	3	17.3	3	100	0	104	32	0	0	67	0.91
52897790--52899434	821	2.0	822	99	0	3283	36	10	12	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52905397--52905480	32	2.7	31	80	10	82	34	2	2	60	1.22
52905991--52906246	131	2.0	131	99	0	503	32	14	8	44	1.75
52910678--52910721	19	2.2	21	88	8	65	47	18	15	18	1.83
52918073--52918139	12	5.8	12	70	15	52	34	53	1	10	1.44
52922936--52923147	108	2.0	108	97	0	399	47	14	9	28	1.75
52937594--52937781	83	2.3	83	100	0	376	40	26	14	18	1.89
52938268--52938307	19	2.0	21	85	9	57	57	2	10	30	1.45
52938448--52939070	311	2.0	312	99	0	1239	34	12	10	43	1.76
52944724--52944766	17	2.6	16	78	7	50	53	0	6	39	1.28
52945041--52945080	8	5.1	8	87	6	55	67	0	0	32	0.91
52945089--52945498	204	2.0	205	99	0	813	36	14	15	33	1.87
52948113--52948201	39	2.2	40	79	13	96	15	7	11	65	1.47
52948406--52948539	72	1.9	72	88	0	205	32	20	18	29	1.96
52950852--52950891	12	3.4	12	82	6	55	62	2	0	35	1.09
52951443--52951646	101	2.0	101	94	0	354	49	12	2	35	1.56
52955879--52955929	3	17.0	3	100	0	102	33	0	0	66	0.92
52955019--52956828	910	2.0	910	97	0	3437	31	18	7	42	1.78
52956789--52956828	3	13.3	3	100	0	80	35	0	0	65	0.93
52958661--52958877	108	2.0	109	99	0	427	51	10	3	34	1.53
52970392--52970444	16	3.3	15	82	12	70	37	5	1	54	1.35
52970975--52971030	24	2.3	24	75	9	60	57	1	12	28	1.46
52977251--52977285	17	2.1	16	89	5	52	34	2	8	54	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52977352--52977398	18	2.6	18	86	3	58	46	2	0	51	1.13
52977366--52977427	23	2.7	23	73	12	63	45	6	1	46	1.38
52990264--52990302	15	2.6	15	84	11	53	28	0	5	66	1.12
52991533--52992095	45	12.8	45	77	9	495	15	26	15	43	1.86
52991533--52992110	87	6.6	90	76	9	489	15	26	15	43	1.86
52991533--52992110	177	3.3	174	81	7	634	15	26	15	43	1.86
52991810--52992046	126	1.9	126	83	6	311	16	24	14	44	1.85
53003917--53003961	18	2.5	18	88	0	63	42	4	40	13	1.64
53005843--53005900	26	2.3	26	85	8	75	50	5	15	29	1.66
53009301--53009389	39	2.2	40	88	6	135	44	11	13	30	1.78
53009608--53009651	15	2.8	16	82	6	54	31	4	20	43	1.72
53021321--53021386	31	2.2	31	83	2	80	51	9	4	34	1.54
53024323--53024376	24	2.2	25	80	3	65	68	5	5	20	1.30
53031126--53031168	20	2.1	21	82	4	52	30	6	0	62	1.21
53038684--53038714	3	10.3	3	92	0	53	70	0	0	29	0.87
53038683--53038712	15	2.0	15	100	0	60	73	0	0	26	0.84
53051509--53051544	13	2.8	13	86	0	54	33	8	19	38	1.82
53063686--53063725	6	6.7	6	91	0	62	50	0	15	35	1.44
53064760--53064804	20	2.3	20	88	3	65	68	4	0	26	1.08
53075598--53075677	42	1.9	42	92	0	133	17	18	16	47	1.83
53076599--53076645	22	2.0	23	88	8	69	34	8	4	53	1.51
53085462--53085751	98	3.0	97	89	4	417	39	17	2	41	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53085497--53085648	50	3.2	46	64	15	110	38	18	1	40	1.62
53092407--53092469	27	2.3	26	83	5	72	71	1	4	22	1.13
53106423--53106672	126	2.0	126	100	0	500	44	12	8	34	1.71
53120355--53120405	19	2.8	19	82	11	54	39	0	0	60	0.97
53120374--53120415	18	2.3	18	80	8	50	42	0	2	54	1.13
53120376--53120414	19	2.1	18	85	4	51	38	0	2	58	1.12
53122649--53122680	10	3.1	10	95	4	55	21	0	0	78	0.76
53122677--53122727	11	4.9	11	88	9	72	45	0	0	54	0.99
53122667--53122727	31	2.0	30	90	3	95	42	0	0	57	0.98
53122668--53122726	9	6.1	9	83	11	64	42	0	0	57	0.98
53124054--53124092	20	2.0	20	85	10	53	58	2	0	38	1.12
53130492--53130539	25	1.9	25	82	0	60	39	10	6	43	1.64
53131794--53131863	16	4.4	16	83	3	79	27	31	2	38	1.71
53142446--53142476	1	31.0	1	100	0	62	100	0	0	0	0.00
53168417--53168451	3	11.7	3	100	0	70	65	0	0	34	0.93
53173101--53173146	24	1.9	24	91	8	76	54	0	0	45	0.99
53179450--53179491	19	2.2	20	86	4	59	80	7	11	0	0.88
53179450--53179489	20	1.9	22	85	10	57	80	7	12	0	0.91
53194237--53194314	30	2.6	28	75	20	77	51	3	2	42	1.34
53197785--53197829	21	2.1	22	83	4	56	71	4	8	15	1.28
53208694--53208752	31	1.9	31	85	0	82	45	22	10	22	1.81
53223747--53223784	19	2.0	20	89	5	60	28	0	5	65	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53241880--53241926	18	2.6	18	82	0	58	12	4	57	25	1.54
53242024--53242076	24	2.2	24	83	6	63	13	5	62	18	1.50
53241911--53242359	126	3.6	124	81	7	378	20	4	54	20	1.62
53242143--53242196	3	18.0	3	76	0	54	9	1	61	27	1.37
53242215--53242253	6	6.5	6	100	0	78	30	0	51	17	1.46
53242244--53242284	18	2.3	19	80	20	52	19	2	56	21	1.54
53242287--53242331	9	5.0	9	78	10	56	8	2	64	24	1.34
53242391--53242430	12	3.3	12	78	0	53	5	12	62	20	1.48
53242391--53242446	24	2.3	24	93	0	94	5	12	60	21	1.51
53242406--53242448	18	2.4	18	88	0	59	4	13	62	18	1.48
53253999--53254065	34	1.9	35	87	3	100	31	7	16	44	1.75
53259647--53259673	11	2.5	11	100	0	54	88	0	11	0	0.50
53270800--53270938	68	2.0	68	100	0	278	49	6	17	25	1.71
53293817--53293842	7	3.7	7	100	0	52	26	15	0	57	1.38
53295975--53296104	29	4.5	29	67	18	92	62	3	3	31	1.26
53296040--53296107	31	2.1	33	84	15	90	63	2	0	33	1.10
53296895--53296925	2	15.5	2	93	0	53	48	0	0	51	1.00
53297913--53298133	51	4.4	51	74	11	193	30	24	12	32	1.92
53297945--53298133	51	3.7	51	81	8	199	30	23	13	31	1.94
53298051--53298133	26	3.2	26	71	21	93	32	24	10	32	1.90
53298567--53298637	35	2.0	35	97	0	133	40	15	22	21	1.90
53326000--53326026	4	6.8	4	100	0	54	74	0	0	25	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53326035--53326096	31	2.0	31	81	6	72	41	14	8	35	1.75
53340760--53340830	37	1.9	36	85	2	97	63	4	1	30	1.22
53348946--53349004	25	2.4	25	91	0	100	25	25	16	32	1.97
53370518--53370571	16	3.3	16	80	12	56	68	3	0	27	1.06
53370518--53370571	17	3.2	17	80	12	58	68	3	0	27	1.06
53370517--53370571	15	3.5	15	79	13	56	67	3	0	29	1.08
53371507--53373448	986	2.0	986	99	0	3875	40	11	9	38	1.74
53373376--53373540	82	2.0	83	94	3	289	56	4	9	28	1.52
53386722--53386762	17	2.3	18	91	8	66	34	9	2	53	1.47
53403796--53403823	13	2.2	13	100	0	56	57	14	7	21	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163