genome.fa.s4.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  16  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5437167--5437788	216	2.9	215	91	1	987	28	15	20	35	1.93
5441074--5441133	32	1.9	32	86	3	86	61	3	1	33	1.22
5442141--5442207	34	2.0	34	87	0	98	41	4	19	34	1.72
5442454--5442573	46	2.6	46	78	2	125	35	16	10	37	1.84
5445935--5445983	3	16.3	3	100	0	98	67	0	0	32	0.91
5449023--5449175	75	2.0	75	97	0	288	22	18	20	37	1.94
5456640--5456687	23	2.0	24	84	4	62	43	6	8	41	1.60
5456819--5456864	24	1.9	24	95	0	83	21	28	23	26	1.99
5459626--5459667	4	10.5	4	94	0	75	26	2	0	71	0.98
5461120--5461432	72	4.3	72	91	0	475	29	16	19	35	1.94
5468568--5468600	15	2.1	16	94	5	59	18	0	3	78	0.87
5471592--5471650	26	2.2	27	82	11	77	8	27	3	61	1.41
5472880--5473264	144	2.7	144	94	0	671	30	14	19	36	1.91
5472880--5473268	72	5.4	72	85	0	553	29	14	19	36	1.91
5476064--5476280	120	1.8	121	87	1	328	39	17	11	32	1.85
5478768--5478807	21	1.9	21	94	0	71	50	5	12	32	1.62
5480421--5480703	144	2.0	143	89	2	433	28	22	16	32	1.96
5480559--5480972	125	3.3	126	86	2	557	28	22	15	32	1.95
5487145--5488512	700	2.0	700	98	0	2664	33	11	14	40	1.82
5502416--5502503	31	2.9	29	74	14	79	35	11	11	42	1.77
5509874--5509916	23	1.9	23	90	4	70	55	4	9	30	1.52
5513037--5513081	16	2.8	18	78	21	55	71	0	0	28	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5513035--5513082	24	2.0	24	91	4	78	70	0	0	29	0.87
5513041--5513079	15	2.6	15	84	8	53	71	0	0	28	0.86
5517947--5517981	15	2.3	15	90	9	54	28	5	0	65	1.15
5517952--5517998	14	3.2	14	85	11	51	27	6	0	65	1.16
5517948--5517989	20	2.0	22	86	13	61	28	7	0	64	1.20
5518216--5518259	23	1.9	23	81	9	54	38	6	4	50	1.50
5525381--5525426	24	1.9	24	90	0	74	39	4	4	52	1.41
5525381--5525429	26	2.0	24	84	8	62	38	4	4	53	1.39
5525375--5525432	24	2.4	24	82	2	71	34	3	5	56	1.38
5529270--5529324	28	2.0	28	96	0	101	45	16	9	29	1.78
5529895--5529919	7	3.6	7	100	0	50	0	12	0	88	0.53
5531661--5531690	16	1.9	15	93	6	51	40	0	6	53	1.27
5547144--5547174	4	7.8	4	100	0	62	22	0	0	77	0.77
5557523--5557547	10	2.5	10	100	0	50	16	12	20	52	1.75
5565312--5565370	31	1.9	31	85	0	82	45	11	5	37	1.63
5568824--5568897	36	2.1	36	94	0	130	28	17	10	43	1.83
5572861--5572890	15	1.9	15	93	6	51	13	0	3	83	0.77
5573478--5573535	5	11.4	5	77	18	50	15	5	0	79	0.90
5573481--5573524	16	2.6	17	89	3	63	13	4	0	81	0.83
5573483--5573524	17	2.6	16	88	3	57	14	4	0	80	0.86
5573483--5573535	16	3.2	16	80	15	56	15	5	0	79	0.91
5574198--5574232	15	2.3	15	90	9	54	28	5	0	65	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5574467--5574518	23	2.3	23	83	6	61	38	3	3	53	1.37
5581131--5581188	24	2.4	24	88	2	80	34	1	5	58	1.30
5581131--5581197	24	2.8	24	83	2	62	32	5	4	56	1.43
5589244--5589304	23	2.7	21	82	12	52	65	3	0	31	1.09
5589258--5589304	23	2.0	23	88	8	69	63	2	0	34	1.06
5592397--5592494	3	33.0	3	74	10	85	59	3	4	33	1.32
5594243--5594546	72	4.2	72	84	3	414	30	13	20	35	1.91
5594243--5594545	144	2.1	145	92	2	504	30	13	20	35	1.91
5600260--5600314	29	1.9	28	85	3	74	54	3	9	32	1.49
5600809--5600888	9	8.9	9	72	10	56	58	2	3	35	1.29
5607610--5607670	30	1.9	30	81	15	70	45	3	3	47	1.35
5613254--5613301	3	16.0	3	100	0	96	33	0	0	66	0.92
5615371--5615431	31	2.0	31	90	0	95	52	3	4	39	1.39
5617635--5617685	24	2.1	23	82	13	59	15	9	1	72	1.19
5624217--5624262	16	3.1	15	76	17	51	52	13	0	34	1.40
5624220--5624264	13	3.1	15	81	15	58	55	13	0	31	1.38
5624738--5624762	7	3.6	7	100	0	50	12	28	0	60	1.32
5624880--5624959	39	2.1	39	100	0	160	36	17	10	36	1.83
5634562--5634621	30	2.0	30	93	0	102	26	3	11	58	1.49
5634925--5635011	34	2.6	34	90	0	129	24	10	12	52	1.70
5635008--5635049	23	2.0	21	86	13	59	38	0	7	54	1.28
5639964--5639996	15	2.3	15	89	5	50	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5647343--5647483	70	2.0	70	100	0	282	37	8	9	43	1.69
5650750--5651080	46	7.4	46	68	10	175	31	23	18	27	1.97
5650748--5651151	134	3.0	134	95	0	729	30	22	18	27	1.98
5651266--5651400	42	3.2	42	65	19	116	25	21	24	28	1.99
5651390--5651531	44	3.2	43	67	25	125	29	26	23	20	1.99
5651133--5651795	86	7.7	86	88	6	755	26	23	23	26	2.00
5651434--5651575	44	3.2	44	69	21	143	27	23	24	23	2.00
5651526--5651764	88	2.9	81	82	10	295	23	23	25	26	2.00
5651133--5651795	254	2.6	257	80	9	728	26	23	23	26	2.00
5652237--5652432	108	1.8	108	88	2	304	46	10	17	25	1.80
5652771--5652818	18	2.6	19	93	3	80	0	16	2	81	0.79
5653250--5653305	11	4.9	11	80	6	58	3	5	5	85	0.81
5653250--5653307	26	2.3	26	85	8	75	3	5	6	84	0.86
5653269--5653308	13	3.0	13	86	13	55	2	7	7	82	0.92
5654648--5654683	14	2.6	14	95	0	63	44	13	22	19	1.86
5654633--5654673	20	2.0	20	86	9	57	39	14	24	21	1.91
5671842--5672125	72	3.9	71	86	2	388	29	14	19	36	1.91
5671813--5672129	144	2.2	144	93	1	537	29	13	19	37	1.90
5671813--5672149	72	4.7	71	76	7	268	27	14	18	38	1.90
5679101--5679315	118	1.8	119	88	1	333	39	16	11	33	1.84
5682805--5682951	73	2.0	73	97	0	276	14	26	25	33	1.94
5683424--5683510	15	5.6	15	75	16	70	27	9	4	58	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5683424--5683468	18	2.5	18	88	0	63	31	11	2	55	1.47
5683433--5683514	21	3.9	21	72	12	60	25	9	6	58	1.53
5692803--5693102	72	4.2	72	86	1	422	32	13	18	36	1.90
5692790--5693106	144	2.2	144	93	1	528	30	13	18	36	1.90
5698431--5698648	119	1.8	120	85	1	312	38	16	11	33	1.85
5701248--5701284	15	2.3	16	86	13	58	40	21	13	24	1.89
5701254--5701285	15	2.1	15	100	0	64	40	25	12	21	1.88
5701633--5701658	11	2.4	11	100	0	52	57	19	0	23	1.40
5708964--5708996	15	2.1	16	88	5	50	72	3	0	24	0.98
5710670--5710709	3	13.3	3	94	0	71	67	2	0	30	1.04
5730412--5730438	13	2.1	13	100	0	54	25	14	0	59	1.36
5730506--5730544	21	1.9	20	84	5	51	43	2	0	53	1.14
5730948--5730988	7	5.7	7	85	5	55	34	2	0	63	1.08
5730946--5730988	22	2.0	21	90	4	68	34	2	0	62	1.08
5731740--5731778	16	2.5	16	91	4	62	17	7	0	74	1.05
5731739--5731776	15	2.4	17	82	13	53	15	7	0	76	1.01
5734566--5734681	23	5.0	23	66	18	71	37	3	4	55	1.37
5734648--5734681	15	2.4	14	90	5	50	32	2	0	64	1.08
5735593--5735647	18	3.1	18	89	5	76	50	5	0	43	1.25
5738294--5738384	1	91.0	1	78	0	74	3	7	2	86	0.75
5738263--5738391	38	3.5	38	73	6	120	4	11	3	80	0.97
5743889--5743928	17	2.3	17	86	4	53	60	0	2	37	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5746516--5746600	42	2.0	41	84	10	111	60	5	4	29	1.41
5749822--5750138	72	4.4	72	84	1	429	36	19	14	29	1.91
5749822--5750138	144	2.2	144	93	1	537	36	19	14	29	1.91
5752711--5752748	17	2.2	18	86	13	53	63	13	2	21	1.42
5753259--5753390	23	5.7	23	77	7	124	56	3	6	33	1.41
5753259--5753390	47	2.8	46	81	5	158	56	3	6	33	1.41
5754279--5754305	7	3.9	7	100	0	54	88	0	11	0	0.50
5755233--5755276	16	2.9	14	81	18	52	18	2	0	79	0.83
5755233--5755276	17	2.9	15	83	12	54	18	2	0	79	0.83
5756555--5756624	23	3.0	22	73	15	61	31	8	8	51	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163