Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  130  of  163  ( 19464 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41885608--41885818
42
5.0
42
79
4
201
32
19
23
24
1.98
41887118--41887678
114
4.9
113
91
1
863
30
19
23
27
1.98
41902418--41902480
29
2.2
29
82
5
74
38
11
6
44
1.66
41911242--41911280
21
1.9
20
84
5
51
30
12
7
48
1.69
41915323--41915352
4
7.5
4
100
0
60
0
0
23
76
0.78
41916849--41916971
61
2.0
61
95
0
219
34
17
22
26
1.96
41918916--41919002
45
1.9
45
90
4
140
42
0
3
54
1.17
41919208--41919284
32
2.5
30
76
17
77
44
1
2
51
1.23
41919294--41919327
16
2.1
17
88
5
52
58
0
2
38
1.13
41927598--41927631
16
2.1
16
100
0
68
29
17
0
52
1.45
41927844--41927877
16
2.1
16
100
0
68
29
17
0
52
1.45
41927486--41927977
246
2.0
246
99
0
975
43
11
10
34
1.76
41934325--41934375
22
2.3
22
86
0
75
27
0
5
66
1.14
41936514--41936544
2
15.0
2
93
6
53
48
3
0
48
1.17
41939130--41939169
10
4.3
10
78
18
50
75
2
0
22
0.93
41941418--41941575
82
1.9
82
90
2
255
39
7
18
34
1.79
41945872--41945903
11
2.9
11
100
0
64
53
0
0
46
1.00
41947054--41947092
21
2.0
21
85
10
55
41
0
2
56
1.13
41950878--41950912
15
2.2
16
90
5
54
74
0
0
25
0.82
41960570--41960596
14
1.9
14
100
0
54
22
11
14
51
1.73
41960630--41960692
30
2.1
30
87
0
90
26
1
14
57
1.47
41961676--41961720
21
2.1
23
84
12
60
8
33
6
51
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41980708--41980766
28
2.3
24
75
13
57
49
5
3
42
1.41
41996432--41996466
10
3.5
10
88
0
52
0
0
11
88
0.51
41996350--41996577
122
1.9
121
98
0
438
28
14
15
41
1.87
41997617--41997680
27
2.4
28
73
7
69
50
9
6
34
1.60
41998580--41998721
21
6.9
20
73
18
114
60
1
0
37
1.11
41998603--41998642
11
3.6
11
89
0
62
55
0
0
45
0.99
41998658--41998708
9
5.6
9
76
4
57
72
1
0
25
0.95
42000362--42000429
19
3.5
19
76
15
77
63
1
1
33
1.13
42000368--42000418
9
5.6
9
76
4
57
72
1
0
25
0.95
42000636--42000673
18
2.1
18
100
0
76
34
5
42
18
1.73
42003591--42003655
31
2.1
32
85
2
87
32
3
15
49
1.60
42009000--42009065
13
5.1
13
84
0
96
30
7
24
37
1.83
42011065--42011097
17
1.9
17
93
0
57
87
12
0
0
0.53
42011192--42011232
4
9.8
4
84
10
55
68
0
31
0
0.90
42017172--42017356
3
61.7
3
100
0
370
67
32
0
0
0.91
42017355--42017392
3
12.3
3
88
5
58
63
5
0
31
1.17
42017438--42017476
20
2.0
21
85
10
55
66
10
0
23
1.22
42017610--42017683
27
2.8
28
81
8
82
17
29
25
27
1.97
42017735--42017805
29
2.5
29
88
6
101
50
0
9
39
1.36
42032603--42032639
2
18.5
2
100
0
74
51
0
0
48
1.00
42038628--42038675
18
2.7
18
83
0
60
25
29
18
27
1.98
42043927--42043951
3
8.3
3
100
0
50
36
0
0
64
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42044425--42044474
20
2.5
20
74
6
57
50
2
0
48
1.12
42046799--42046827
14
2.0
15
93
6
51
27
0
20
51
1.47
42048505--42048646
41
3.5
41
80
6
164
21
19
27
30
1.98
42049319--42049642
41
7.9
41
99
0
632
36
0
0
63
0.97
42049338--42049660
30
11.5
30
63
23
132
36
0
0
62
0.98
42049623--42049661
20
2.0
20
89
0
60
38
2
0
58
1.12
42052628--42052652
9
2.8
9
100
0
50
8
12
0
80
0.92
42052704--42052751
23
2.1
23
92
0
78
43
10
4
41
1.58
42053124--42053175
19
2.9
18
77
8
61
65
3
3
26
1.27
42053114--42053184
19
3.8
20
68
19
53
67
4
2
25
1.22
42056107--42056153
3
15.7
3
81
0
58
65
8
25
0
1.20
42056111--42056151
6
6.8
6
91
0
64
68
9
21
0
1.18
42056111--42056153
12
3.6
12
93
0
77
67
9
23
0
1.19
42061018--42061042
9
2.8
9
100
0
50
68
8
24
0
1.16
42062139--42062168
8
3.8
8
100
0
60
23
0
0
76
0.78
42067787--42067832
23
2.0
22
83
4
56
30
4
4
60
1.35
42073990--42074172
62
3.0
62
81
8
189
40
16
5
37
1.72
42075963--42075994
16
2.1
15
94
5
55
34
0
12
53
1.39
42077308--42077340
16
2.0
17
88
5
50
45
0
0
54
0.99
42077308--42077340
17
2.0
17
88
5
50
45
0
0
54
0.99
42078805--42078831
13
2.1
13
100
0
54
62
7
0
29
1.22
42085324--42085349
6
4.3
6
100
0
52
34
0
15
50
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42089943--42090009
34
1.9
35
87
3
100
44
14
7
32
1.74
42091848--42091880
16
2.1
16
100
0
66
0
12
30
57
1.35
42103441--42103477
17
2.1
19
85
10
51
45
5
5
43
1.49
42103788--42103814
2
13.5
2
100
0
54
51
0
0
48
1.00
42107214--42107250
16
2.2
17
90
4
58
64
0
0
35
0.94
42110267--42110291
6
4.2
6
100
0
50
16
36
0
48
1.46
42114102--42114128
2
13.5
2
100
0
54
51
0
0
48
1.00
42115571--42115679
55
2.0
55
83
7
141
31
21
17
30
1.96
42118463--42118511
22
2.2
22
85
10
64
67
6
4
22
1.30
42118463--42118518
22
2.5
22
82
8
60
67
5
5
21
1.31
42118898--42118929
16
1.9
17
93
6
57
6
12
0
81
0.87
42146397--42146422
11
2.4
11
100
0
52
61
7
0
30
1.24
42159299--42159323
13
1.9
13
100
0
50
32
0
4
64
1.12
42160146--42160435
144
2.0
144
99
0
571
28
14
10
46
1.77
42177366--42177390
3
8.3
3
100
0
50
0
32
0
68
0.90
42179334--42179444
33
3.2
33
61
14
78
27
10
19
42
1.84
42179280--42179461
72
2.5
73
95
0
321
31
11
16
40
1.84
42181413--42181459
24
2.0
24
84
12
62
42
4
4
48
1.42
42185604--42185659
10
5.9
9
78
17
60
62
1
3
32
1.23
42187416--42187537
23
5.3
23
87
0
181
30
27
21
21
1.98
42187416--42187535
46
2.6
46
94
0
204
30
27
21
20
1.98
42188823--42188881
29
2.0
30
86
3
84
38
0
3
57
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42188953--42189016
17
3.6
17
74
18
60
29
1
1
67
1.09
42192546--42192608
13
4.8
13
88
0
99
36
25
6
31
1.81
42193566--42193596
16
1.9
16
93
0
53
38
3
3
54
1.32
42196825--42196870
22
2.2
21
85
11
60
39
2
0
58
1.10
42201120--42201146
2
13.5
2
100
0
54
48
0
0
51
1.00
42202280--42202320
3
13.7
3
100
0
82
0
31
34
34
1.58
42203491--42203517
13
2.1
13
100
0
54
48
14
14
22
1.81
42210534--42210581
24
2.0
24
84
8
62
47
8
22
20
1.77
42216618--42216676
17
3.6
16
75
6
55
25
0
18
55
1.42
42218722--42218771
21
2.4
21
83
9
59
46
18
2
34
1.60
42219531--42219573
15
2.9
14
83
10
50
9
9
2
79
1.03
42227852--42228001
73
2.1
73
100
0
300
32
27
11
28
1.91
42232900--42232928
13
2.2
13
100
0
58
31
0
0
68
0.89
42242287--42242365
27
2.9
27
94
0
131
30
22
31
15
1.95
42242438--42242476
19
2.1
19
85
4
53
35
5
0
58
1.20
42242691--42242729
19
2.1
19
85
4
53
35
7
0
56
1.28
42242696--42242738
18
2.3
19
84
4
52
39
11
0
48
1.40
42242735--42242837
19
5.6
19
79
5
122
51
0
11
35
1.45
42242735--42242833
37
2.7
37
98
0
189
49
1
12
37
1.47
42242735--42242837
18
5.6
18
76
14
111
51
0
11
35
1.45
42242913--42242990
27
2.9
27
86
0
111
17
29
21
30
1.97
42243059--42243102
23
1.9
23
95
0
79
56
2
6
34
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42246152--42246207
19
3.1
18
80
12
60
35
3
0
60
1.14
42247743--42247922
89
2.0
90
98
1
353
46
7
7
38
1.61
42255197--42255233
10
3.3
12
89
10
53
40
5
0
54
1.24
42256548--42257475
117
8.1
117
87
6
1276
30
15
27
26
1.96
42256548--42257475
228
4.1
225
88
5
1294
30
15
27
26
1.96
42258169--42258206
19
2.0
19
85
10
51
42
0
0
57
0.98
42260663--42260711
22
2.3
20
83
10
62
63
2
32
2
1.17
42260663--42260712
21
2.4
22
86
6
68
64
2
32
2
1.16
42261045--42261088
21
2.1
21
95
0
79
59
11
0
29
1.32
42261122--42261159
19
1.9
19
89
5
58
57
7
0
34
1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163