genome.fa.s4.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  111  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35744236--35744309	4	19.0	4	86	5	107	50	28	0	21	1.49
35770653--35770687	6	5.8	6	93	0	61	82	0	17	0	0.66
35771911--35772136	88	2.6	87	90	2	344	27	21	26	24	1.99
35772330--35773014	50	13.7	50	69	4	425	28	23	26	21	1.99
35772338--35773026	100	6.9	100	96	0	1182	28	24	25	21	1.99
35783944--35783993	21	2.4	21	89	0	82	12	34	26	28	1.92
35783914--35783993	42	1.9	42	84	0	106	15	31	27	26	1.95
35790797--35790859	22	2.6	24	80	14	76	39	19	25	15	1.91
35792950--35793469	114	4.6	114	86	0	700	35	17	20	26	1.95
35792950--35793461	229	2.2	227	87	0	709	35	17	20	26	1.95
35792950--35793534	114	5.1	113	83	4	667	34	17	20	26	1.95
35793942--35793983	22	2.0	21	85	4	57	16	4	30	47	1.67
35793955--35793994	21	1.9	21	85	10	55	20	2	30	47	1.63
35794062--35794124	28	2.2	29	80	8	76	19	1	34	44	1.60
35794092--35794131	21	1.9	21	84	0	53	20	0	32	47	1.50
35794657--35794901	72	3.4	72	67	12	196	25	17	21	35	1.95
35794729--35794959	74	3.1	74	66	14	215	23	17	19	38	1.92
35794664--35794958	146	2.0	146	96	1	547	24	15	20	38	1.92
35797033--35797209	44	4.0	44	100	0	354	27	20	4	48	1.69
35797165--35798584	125	11.4	125	100	0	2840	29	13	7	49	1.69
35796912--35798584	250	6.7	250	96	1	2977	29	13	7	49	1.70
35796912--35798584	375	4.4	375	96	1	2977	29	13	7	49	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35800164--35800397	114	2.0	115	98	0	452	41	8	11	38	1.73
35800786--35800827	22	1.9	22	85	9	59	57	2	4	35	1.33
35801757--35802212	222	2.0	223	98	0	887	46	8	8	37	1.64
35814286--35814350	21	3.1	21	77	4	69	38	18	40	3	1.66
35814339--35814390	21	2.5	21	83	0	68	38	15	42	3	1.65
35814289--35814390	42	2.4	42	80	3	116	39	16	40	3	1.67
35814698--35814846	43	3.4	43	76	13	151	18	16	30	33	1.94
35816555--35816583	15	2.0	15	93	6	51	51	0	0	48	1.00
35826815--35826875	30	2.0	30	100	0	122	57	16	0	26	1.39
35827870--35828038	84	2.0	85	98	1	331	31	10	11	46	1.75
35841048--35841113	3	22.0	3	71	0	51	30	3	6	60	1.36
35845445--35845503	27	2.2	27	93	0	100	28	23	37	10	1.88
35847367--35847411	22	2.1	21	91	4	72	0	33	2	64	1.06
35847477--35847552	27	2.8	28	86	4	95	21	36	23	18	1.95
35861197--35861258	17	3.5	17	79	16	81	46	11	6	35	1.65
35861185--35861258	36	2.1	36	100	0	148	47	13	5	33	1.66
35861185--35861242	19	3.2	19	76	18	77	46	15	5	32	1.68
35863423--35863460	18	2.1	18	90	0	58	23	15	18	42	1.89
35866753--35867030	46	6.0	46	93	2	450	28	26	9	35	1.87
35872248--35872526	137	2.0	138	99	0	551	44	5	9	40	1.60
35874496--35874540	22	2.0	24	91	8	76	24	22	0	53	1.46
35875045--35875083	20	2.0	20	95	5	71	41	5	2	51	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35876398--35876447	20	2.3	23	86	10	70	60	12	0	28	1.32
35881188--35881447	129	2.0	130	98	0	504	44	3	5	46	1.45
35899482--35899509	14	2.0	14	100	0	56	42	14	14	28	1.84
35901395--35901517	21	6.0	21	77	3	133	16	21	18	43	1.88
35901387--35901514	42	3.1	42	84	4	163	16	21	17	44	1.86
35903562--35903619	22	2.6	22	81	7	64	41	17	5	36	1.72
35905672--35905856	46	4.0	46	94	0	316	28	27	9	35	1.88
35906937--35906993	29	2.0	29	96	0	105	40	21	7	31	1.80
35913130--35913258	58	2.2	60	80	5	138	24	14	18	41	1.88
35914923--35914967	22	2.0	22	82	0	54	33	24	20	22	1.97
35916705--35916749	5	9.0	5	92	7	74	57	0	0	42	0.98
35920349--35920393	13	3.3	13	90	6	63	40	0	13	46	1.43
35924600--35924767	46	3.8	46	83	12	244	32	14	21	30	1.94
35924642--35924766	38	3.1	38	88	9	169	32	16	21	29	1.95
35924600--35924766	84	2.0	84	97	0	316	32	14	21	30	1.94
35947613--35947637	12	2.1	12	100	0	50	32	0	0	68	0.90
35949173--35949223	23	2.2	23	89	0	75	27	7	21	43	1.80
35950521--35950554	2	17.0	2	100	0	68	50	0	0	50	1.00
35953448--35953544	27	3.5	27	85	2	122	32	24	17	24	1.97
35953640--35953714	35	2.1	35	100	0	150	25	28	10	36	1.89
35953899--35953941	21	2.0	21	82	8	52	65	16	2	16	1.38
35955990--35956062	23	3.2	23	94	0	128	30	27	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35956289--35956329	18	2.3	18	88	12	59	43	19	0	36	1.51
35960847--35960933	43	2.0	43	97	0	165	44	5	0	49	1.26
35960901--35960954	28	1.9	28	84	0	72	42	1	1	53	1.22
35960852--35960944	43	2.2	42	90	5	150	46	4	1	48	1.29
35962652--35962701	21	2.4	20	80	9	55	38	4	22	36	1.73
35962673--35962941	134	2.0	135	97	2	515	46	3	18	31	1.66
35964585--35964652	29	2.3	30	77	10	77	22	16	20	41	1.90
35964592--35964647	29	1.9	29	85	7	78	25	16	19	39	1.91
35965555--35965622	29	2.3	29	80	7	75	41	20	16	22	1.90
35967370--35967439	28	2.4	29	95	4	133	60	0	0	40	0.97
35974823--35974850	13	2.2	13	100	0	56	50	7	0	42	1.30
35975729--35975781	25	2.1	25	83	13	65	28	35	0	35	1.58
35989103--35989133	16	1.9	16	93	0	53	48	9	6	35	1.62
35989838--35990018	67	2.7	67	81	9	194	36	18	6	38	1.77
35989839--35989995	66	2.4	67	84	9	189	38	15	5	40	1.70
35990882--35990918	9	4.1	9	92	0	65	29	10	13	45	1.77
35990973--35991002	9	3.4	9	90	9	53	40	23	13	23	1.90
35993705--35993736	15	2.1	15	94	0	55	62	0	12	25	1.30
35998852--35998922	35	2.0	35	94	0	124	40	11	33	14	1.81
36000838--36000878	21	2.0	21	81	18	50	21	26	19	31	1.97
36019648--36019699	26	2.1	24	86	10	70	28	0	1	69	0.99
36019625--36019702	26	3.0	26	70	24	65	30	0	2	66	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36021228--36021262	18	1.9	18	88	0	52	28	25	2	42	1.69
36021687--36021799	58	1.9	59	82	5	140	40	2	7	48	1.46
36024631--36025154	126	4.2	126	91	1	834	27	18	17	36	1.93
36025212--36025317	34	2.9	38	74	14	123	38	16	0	45	1.47
36033848--36033883	5	7.4	5	93	6	65	19	0	0	80	0.71
36038566--36038598	15	2.3	15	89	5	50	54	6	6	33	1.50
36039128--36039491	196	1.9	196	94	1	649	35	17	6	41	1.75
36042487--36042530	22	2.0	22	100	0	88	27	22	4	45	1.72
36046100--36046632	46	11.7	45	86	2	656	23	20	14	41	1.89
36046098--36046592	91	5.4	91	89	1	706	23	19	14	41	1.89
36052383--36052430	15	3.2	15	100	0	96	39	18	20	20	1.92
36060041--36060106	28	2.4	28	89	0	96	45	10	0	43	1.38
36060060--36060115	28	2.0	28	89	6	87	50	10	0	39	1.37
36060161--36060233	27	2.7	27	89	0	110	31	20	30	17	1.96
36061318--36061376	27	2.2	27	87	0	82	15	28	25	30	1.96
36061418--36061480	28	2.3	28	94	2	110	50	0	6	42	1.27
36073686--36073753	22	3.3	21	84	8	86	39	19	11	29	1.87
36089130--36089172	17	2.4	18	88	7	61	62	0	0	37	0.95
36090814--36090907	9	10.4	9	88	0	134	23	9	24	42	1.84
36092693--36092730	19	2.1	18	90	5	58	57	7	0	34	1.28
36093183--36093217	18	1.9	18	94	0	61	0	14	8	77	0.99
36102099--36102168	31	2.3	31	80	5	79	40	10	14	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36113847--36113976	55	2.3	56	86	1	199	27	16	27	27	1.97
36114532--36114578	21	2.2	21	96	0	85	38	4	4	53	1.40
36114442--36114686	110	2.2	110	94	2	418	32	5	11	51	1.60
36114724--36114757	18	1.9	17	88	5	50	26	0	11	61	1.30
36116744--36116819	23	3.4	23	84	10	104	21	22	22	34	1.97
36121384--36121432	19	2.6	19	87	3	64	40	4	4	51	1.40
36125453--36125501	24	2.0	24	96	0	89	24	12	26	36	1.91
36125923--36125952	15	2.0	15	93	0	51	20	23	26	30	1.98
36133677--36133708	15	2.1	15	94	0	55	68	3	6	21	1.26
36136813--36136848	15	2.5	14	86	8	54	44	8	0	47	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163