genome.fa.s4.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  148  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48756912--48756977	31	2.1	31	83	5	80	46	12	15	25	1.80
48757193--48757309	51	2.3	51	83	7	148	35	15	6	42	1.73
48765239--48765593	118	3.0	120	81	7	343	26	20	23	29	1.99
48770134--48770437	122	2.5	120	81	6	362	38	8	13	39	1.75
48782856--48782883	2	14.0	2	100	0	56	0	50	0	50	1.00
48785576--48785757	86	2.1	87	96	1	339	56	9	9	24	1.62
48787390--48787555	44	3.8	44	85	1	199	30	24	17	27	1.97
48787529--48787643	44	2.6	44	76	10	119	26	27	20	25	1.99
48787697--48788218	87	6.0	87	93	0	873	23	23	22	29	1.99
48787701--48788218	175	3.0	174	92	0	874	23	23	22	29	1.99
48789434--48789501	13	5.5	13	79	11	65	14	13	0	72	1.13
48789443--48789500	6	9.7	6	79	20	59	13	13	0	72	1.13
48789434--48789485	6	8.0	7	81	10	58	15	13	0	71	1.15
48805120--48805156	18	2.2	18	90	9	60	48	5	0	45	1.25
48806116--48806141	4	6.5	4	100	0	52	0	26	0	73	0.84
48808851--48808891	11	3.8	11	78	15	50	80	0	0	19	0.71
48817233--48817308	40	1.9	40	83	5	100	53	14	5	26	1.61
48820272--48820348	28	2.6	30	83	4	113	33	20	18	27	1.96
48829548--48829573	2	13.0	2	100	0	52	50	0	0	50	1.00
48833972--48834050	30	2.7	29	81	11	81	24	6	10	59	1.53
48837226--48837327	52	1.9	53	84	7	136	23	17	17	41	1.90
48839605--48839640	18	2.0	18	88	0	54	63	2	16	16	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48840537--48840591	27	2.0	27	82	6	67	56	3	1	38	1.28
48843647--48843684	16	2.2	18	86	9	53	68	5	2	23	1.23
48843724--48843772	23	2.1	23	100	0	98	53	16	12	18	1.73
48847347--48847383	15	2.5	15	86	4	58	29	8	18	43	1.79
48850999--48851036	17	2.2	17	90	0	58	26	7	28	36	1.84
48851227--48851252	12	2.2	12	100	0	52	46	0	23	30	1.53
48854375--48854409	17	2.0	18	88	5	54	68	2	0	28	1.04
48864421--48864542	47	2.6	47	86	1	163	34	26	13	26	1.93
48866560--48866607	24	2.0	24	100	0	96	25	20	0	54	1.45
48873180--48873215	16	2.2	16	90	0	54	33	0	0	66	0.92
48877536--48877574	20	2.0	20	85	10	53	30	0	2	66	1.05
48883558--48883616	31	1.9	31	85	0	82	47	8	6	37	1.61
48889264--48889321	29	2.0	29	96	0	107	24	15	3	56	1.54
48889569--48889630	25	2.5	25	100	0	124	30	20	16	32	1.95
48895730--48895791	25	2.5	25	79	7	74	20	24	25	29	1.99
48896994--48897024	12	2.6	12	94	0	53	35	22	38	3	1.71
48903391--48903419	12	2.4	12	100	0	58	17	20	6	55	1.65
48904248--48904685	218	2.0	219	99	0	869	40	9	12	38	1.75
48905293--48905349	29	1.9	30	85	3	80	56	14	3	26	1.54
48915417--48915446	2	15.5	2	93	6	53	50	0	0	50	1.00
48919973--48919998	6	4.3	6	100	0	52	15	0	0	84	0.62
48925744--48926089	172	2.0	173	99	0	685	43	8	10	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48936261--48936295	8	4.4	8	88	0	52	25	11	22	40	1.88
48936262--48936295	12	2.8	12	86	0	50	26	11	23	38	1.89
48940182--48940208	13	2.1	13	100	0	54	7	22	14	55	1.64
48940831--48940880	18	2.6	19	78	15	59	44	0	0	56	0.99
48951500--48951544	11	4.1	11	79	0	54	8	6	13	71	1.31
48951496--48951539	22	2.0	22	95	0	79	9	6	13	70	1.33
48951759--48951787	2	14.5	2	100	0	58	51	0	0	48	1.00
48959773--48959797	3	8.3	3	100	0	50	32	68	0	0	0.90
48962960--48963014	28	2.1	26	83	10	67	16	9	14	60	1.59
48964837--48964864	2	14.0	2	100	0	56	50	0	0	50	1.00
48975794--48975852	30	2.0	30	86	3	84	50	1	13	33	1.52
48983125--48983169	21	2.1	21	100	0	90	22	13	24	40	1.90
48984325--48984387	13	4.8	13	96	0	117	39	28	9	22	1.85
48985063--48985116	13	4.0	14	77	11	51	16	9	0	74	1.07
48996159--48996220	29	2.1	29	84	6	79	32	9	17	40	1.82
48996523--48996588	29	2.2	30	86	2	98	53	13	3	30	1.55
48997358--48997419	29	2.1	31	84	6	83	17	6	14	61	1.53
48997953--48997986	14	2.3	15	85	5	52	50	0	0	50	1.00
48999459--48999497	3	13.0	3	100	0	78	66	0	0	33	0.92
48999554--48999604	23	2.2	23	86	6	68	74	5	5	13	1.19
49003701--49003748	18	2.7	18	90	0	78	35	12	10	41	1.77
49004192--49004355	72	2.3	72	84	6	208	25	5	13	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49005745--49005786	3	14.0	3	85	9	50	33	4	33	28	1.78
49011072--49011101	12	2.6	12	94	5	53	40	0	6	53	1.27
49015438--49015473	14	2.5	15	90	4	56	80	19	0	0	0.71
49019319--49019500	51	3.6	51	93	0	319	28	24	15	32	1.95
49030461--49030673	75	2.8	76	84	4	286	23	18	25	31	1.97
49032826--49032860	7	4.9	7	86	6	52	0	11	5	82	0.82
49036285--49036326	21	2.0	22	86	13	61	54	2	2	40	1.26
49039826--49039862	13	2.8	13	95	0	65	29	8	16	45	1.76
49045868--49045904	3	12.0	3	94	5	65	67	0	0	32	0.91
49046601--49046639	18	2.1	19	85	4	53	28	2	7	61	1.37
49046610--49046645	18	2.0	17	89	10	54	27	0	8	63	1.23
49050619--49050658	7	5.6	7	96	3	71	42	45	0	12	1.42
49051569--49051740	63	2.7	63	83	1	220	27	24	18	30	1.98
49052313--49052350	12	2.9	13	88	11	60	78	0	21	0	0.74
49053552--49053609	28	2.1	28	100	0	116	32	13	18	34	1.91
49056366--49056428	31	2.1	30	93	3	108	50	11	1	36	1.47
49059710--49060212	122	4.1	122	89	2	661	30	15	20	33	1.93
49070542--49070596	19	2.9	19	81	10	60	16	3	3	76	1.07
49070543--49070595	27	2.0	27	84	0	70	16	1	3	77	1.01
49072241--49072283	18	2.2	20	84	8	54	9	2	9	79	1.03
49072232--49072284	21	2.5	20	79	11	52	11	1	7	79	1.01
49077827--49077887	31	2.0	31	87	6	88	37	6	8	47	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49079654--49079692	20	1.9	21	89	5	62	61	7	2	28	1.37
49085309--49085351	17	2.6	16	78	7	50	48	6	2	41	1.43
49088313--49088350	12	3.2	12	82	10	51	55	0	10	34	1.34
49088304--49088350	24	2.0	24	87	8	69	57	0	10	31	1.33
49089875--49090650	44	17.5	44	79	5	713	30	25	14	29	1.95
49089845--49090650	89	9.1	88	81	4	771	30	25	14	30	1.95
49089847--49090650	133	6.0	134	86	2	1019	30	25	14	29	1.95
49091910--49091957	15	3.4	14	80	13	55	16	18	2	62	1.42
49091921--49091970	15	3.5	15	81	13	52	18	20	2	60	1.46
49094800--49094846	19	2.5	20	86	6	62	44	8	19	27	1.79
49095285--49095320	17	2.1	17	89	0	54	44	22	16	16	1.86
49096916--49096953	12	3.2	12	82	10	51	55	0	10	34	1.34
49096907--49096953	24	2.0	24	87	8	69	57	0	10	31	1.33
49101003--49101162	80	2.0	80	96	0	293	35	25	25	13	1.93
49104904--49105051	44	3.4	44	66	10	113	33	20	19	25	1.97
49104762--49105018	132	1.9	132	89	0	397	32	21	22	23	1.98
49104762--49105051	132	2.2	132	86	1	366	32	20	22	24	1.98
49104906--49105092	88	2.1	88	91	0	302	32	22	19	25	1.97
49104929--49105067	44	3.2	44	67	11	113	35	19	20	23	1.95
49106539--49106585	20	2.3	21	92	3	78	19	4	2	74	1.09
49108950--49108979	2	15.0	2	100	0	60	50	0	0	50	1.00
49110425--49110485	31	2.0	31	90	0	95	59	21	1	18	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49112081--49112127	19	2.6	18	77	9	60	34	0	0	65	0.93
49112106--49112147	22	1.9	22	85	9	59	26	4	0	69	1.08
49112715--49112778	29	2.2	30	83	8	78	31	7	21	39	1.82
49112723--49112787	29	2.2	30	77	2	69	33	6	16	43	1.73
49123962--49124313	183	1.9	183	85	2	492	29	22	19	28	1.98
49124325--49124629	89	3.4	88	73	11	269	27	22	17	32	1.97
49124362--49124639	44	6.2	45	71	12	149	27	21	18	32	1.97
49125570--49125617	15	3.3	13	83	16	51	0	10	4	85	0.73
49138057--49138097	21	2.0	21	90	0	64	26	0	2	70	0.99
49138554--49138594	19	2.1	19	86	4	55	65	0	4	29	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163