genome.fa.s4.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  82  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26835308--26835365	17	3.3	17	82	4	62	75	5	1	17	1.06
26835305--26835359	23	2.4	22	82	11	65	74	7	0	18	1.04
26835305--26835373	23	3.1	21	78	13	50	75	7	1	15	1.09
26836744--26836807	29	2.1	31	80	11	71	64	4	6	25	1.37
26836771--26836836	19	3.5	19	73	19	57	66	7	3	22	1.31
26851001--26851053	21	2.4	22	78	12	56	47	5	0	47	1.26
26852527--26852564	11	3.5	11	85	3	51	36	0	0	63	0.95
26853198--26853252	27	2.2	25	80	9	58	63	1	0	34	1.05
26853200--26853261	28	2.3	25	81	13	70	62	1	0	35	1.05
26860513--26860546	16	2.2	15	89	5	50	44	0	0	55	0.99
26862652--26862828	51	3.5	50	80	3	212	23	16	28	30	1.97
26863423--26863474	26	2.0	26	96	0	95	53	15	5	25	1.63
26865490--26865533	3	14.7	3	100	0	88	65	0	34	0	0.93
26867679--26867723	22	2.0	23	83	8	58	42	6	0	51	1.28
26871930--26871985	29	1.9	29	85	7	78	71	0	7	21	1.09
26877206--26877230	4	6.2	4	100	0	50	48	0	28	24	1.52
26881664--26881880	90	2.4	89	83	5	260	37	13	26	22	1.91
26881686--26881850	30	5.5	30	73	9	122	40	12	25	21	1.89
26884094--26884162	25	2.8	25	88	4	95	30	20	27	21	1.98
26886884--26886914	15	2.1	15	100	0	62	35	32	12	19	1.90
26898476--26898503	14	2.0	14	100	0	56	64	14	14	7	1.48
26899568--26899665	50	2.0	50	83	4	126	26	16	24	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26899534--26899668	25	5.4	26	71	12	104	25	17	23	34	1.96
26900814--26900838	13	1.9	13	100	0	50	0	24	4	72	1.02
26910538--26910584	23	2.0	24	95	4	87	29	21	21	27	1.98
26910837--26910882	14	3.3	14	93	0	83	41	0	2	56	1.11
26915175--26915364	93	2.0	94	98	1	373	37	10	12	39	1.78
26918106--26918157	24	2.2	23	80	6	59	44	11	21	23	1.84
26920982--26921042	31	2.0	31	90	6	97	42	9	14	32	1.79
26928135--26928160	2	13.0	2	100	0	52	50	0	0	50	1.00
26931637--26931661	10	2.5	10	100	0	50	32	8	20	40	1.81
26932945--26932983	13	2.9	13	88	3	51	61	2	5	30	1.31
26935214--26935255	14	3.0	14	83	13	59	30	0	0	69	0.89
26935455--26935496	21	2.0	22	85	4	59	61	21	11	4	1.48
26941185--26941228	5	8.6	5	80	5	52	40	2	18	38	1.63
26941772--26941856	24	3.5	24	74	6	82	17	24	23	34	1.96
26943918--26944032	41	2.7	43	84	8	146	33	25	15	25	1.95
26951826--26951923	41	2.3	43	82	5	119	30	23	18	27	1.98
26954718--26955310	311	1.9	311	96	0	1087	36	21	19	22	1.95
26959857--26959905	20	2.5	19	77	6	53	16	14	6	63	1.49
26959912--26959941	11	2.7	11	94	0	51	13	6	23	56	1.60
26965686--26965744	11	5.5	11	75	20	54	64	1	0	33	1.04
26979931--26980001	30	2.3	31	75	2	81	30	28	2	38	1.71
26985432--26985469	19	2.0	19	90	10	60	42	10	0	47	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26994995--26995070	6	12.2	6	72	13	55	2	23	2	71	1.12
26994995--26995070	25	3.0	24	78	12	82	2	23	2	71	1.12
26995561--26995588	6	4.7	6	100	0	56	82	0	0	17	0.68
26998356--26998680	112	2.9	111	84	3	377	26	19	22	32	1.97
26999375--26999765	90	4.4	89	79	7	373	25	5	15	53	1.64
26999396--26999722	90	3.7	89	85	2	433	25	6	15	52	1.66
27002183--27002236	11	4.8	11	78	19	58	16	22	1	59	1.47
27002187--27002236	5	9.2	5	85	10	55	18	22	2	58	1.49
27002183--27002242	28	2.1	29	84	3	77	20	20	1	58	1.48
27002233--27002267	10	3.4	10	84	7	52	34	2	0	62	1.10
27002205--27002267	21	3.0	21	88	2	81	26	12	1	58	1.43
27002401--27002440	21	1.9	21	100	0	80	32	5	0	62	1.17
27002403--27002448	21	2.2	21	88	7	67	32	6	0	60	1.22
27002660--27002717	17	3.5	15	84	15	71	17	22	0	60	1.36
27002660--27002717	5	10.6	5	85	14	71	17	22	0	60	1.36
27002660--27002717	22	2.6	22	91	8	91	17	22	0	60	1.36
27002710--27002752	20	2.2	20	87	4	61	25	9	0	65	1.22
27002710--27002790	21	3.6	21	74	19	74	23	13	1	61	1.39
27002710--27002812	21	4.7	20	70	22	64	23	13	1	61	1.43
27002840--27002909	22	3.2	22	65	15	54	35	2	12	48	1.56
27002835--27002942	44	2.5	44	93	0	189	36	1	12	50	1.50
27002851--27002920	22	3.2	22	65	15	54	37	2	11	48	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27004419--27004444	12	2.2	12	100	0	52	76	15	7	0	0.99
27004658--27004940	109	2.6	108	83	6	333	34	20	19	25	1.96
27004658--27004991	108	3.1	108	81	5	336	32	20	19	27	1.97
27008674--27008848	43	4.1	43	100	0	350	35	4	21	38	1.74
27012464--27012531	4	17.0	4	76	11	52	0	27	0	72	0.85
27012464--27012535	13	5.6	13	80	11	69	0	27	0	72	0.85
27012464--27012523	14	4.3	14	75	12	52	0	26	0	73	0.84
27013069--27013146	37	2.1	37	100	0	156	43	19	5	32	1.73
27013747--27013796	25	2.0	25	96	0	91	58	24	0	18	1.40
27020981--27021012	16	2.0	16	100	0	64	43	0	0	56	0.99
27021172--27021196	3	8.3	3	100	0	50	36	0	0	64	0.94
27022191--27022343	78	2.0	78	97	0	288	39	26	22	11	1.87
27026706--27026780	37	2.0	37	92	0	123	34	9	18	37	1.83
27028218--27028263	21	2.2	21	88	7	67	28	36	23	10	1.89
27028231--27028272	21	2.0	21	90	0	66	23	38	28	9	1.86
27052891--27052959	27	2.6	27	83	0	75	36	14	26	23	1.93
27055407--27055535	40	3.2	40	75	9	136	36	18	23	21	1.95
27055424--27055560	40	3.4	39	74	5	130	39	19	21	19	1.93
27055408--27055567	81	2.0	81	83	2	205	37	20	21	20	1.94
27055621--27056008	41	9.4	41	87	0	506	21	22	25	30	1.98
27056226--27056267	22	1.9	22	85	0	57	33	0	26	40	1.56
27056291--27056346	15	3.8	15	76	9	53	25	0	41	33	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27056291--27056354	22	3.0	22	84	6	78	25	0	42	32	1.55
27059645--27059692	19	2.5	19	86	0	69	75	2	2	20	1.02
27061280--27061333	19	2.9	18	83	10	65	38	1	0	59	1.08
27063896--27064013	43	2.7	43	81	10	127	27	22	25	24	1.99
27064009--27064184	43	4.1	43	93	0	298	18	17	33	30	1.94
27065493--27065518	9	2.9	9	100	0	52	76	0	0	23	0.78
27068184--27068239	7	7.9	7	94	4	94	16	0	41	42	1.48
27068190--27068239	22	2.3	22	96	3	77	14	0	42	44	1.44
27074262--27074427	43	3.9	43	88	0	233	31	26	19	22	1.98
27077861--27077903	20	2.2	20	100	0	86	39	9	25	25	1.85
27078525--27078567	20	2.2	20	100	0	86	39	9	25	25	1.85
27077446--27078773	664	2.0	664	99	0	2620	30	20	17	31	1.95
27080037--27080075	20	2.0	20	94	0	69	20	20	0	58	1.39
27080347--27080584	41	5.8	40	84	2	192	28	31	19	20	1.97
27080391--27080670	41	6.8	41	83	2	328	30	31	17	20	1.95
27081265--27081383	49	2.4	49	84	0	148	31	15	31	21	1.95
27081321--27081450	48	2.7	48	80	2	125	30	15	25	29	1.96
27083167--27083207	19	2.1	20	90	4	66	58	4	9	26	1.50
27086029--27086076	14	3.4	14	77	11	53	35	6	0	58	1.23
27086021--27086075	29	1.9	28	85	10	76	34	5	0	60	1.20
27091209--27091242	18	2.0	16	88	11	50	61	20	5	11	1.50
27109948--27109991	22	2.0	23	82	13	56	43	4	2	50	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27110675--27110730	22	2.6	22	80	5	53	48	1	0	50	1.11
27110773--27110822	20	2.3	22	83	16	77	42	10	4	44	1.56
27110780--27110821	20	2.1	20	100	0	84	42	9	4	42	1.58
27111189--27111229	14	3.0	13	85	7	55	34	17	9	39	1.82
27115211--27115235	13	1.9	13	100	0	50	40	24	4	32	1.73
27116269--27116293	12	2.1	12	100	0	50	24	16	16	44	1.86
27117354--27117378	13	1.9	13	100	0	50	40	24	4	32	1.73
27140739--27140840	27	3.8	27	81	0	123	19	23	30	26	1.98
27140896--27140924	14	2.0	15	93	6	51	75	0	24	0	0.80
27144232--27144294	33	1.9	33	87	12	94	26	14	38	20	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163