genome.fa.s4.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  152  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50304774--50304847	19	3.8	19	92	1	112	40	16	8	35	1.78
50305567--50305704	29	4.9	29	77	12	169	37	23	5	33	1.79
50323438--50323561	57	2.2	57	98	0	239	30	18	18	32	1.95
50323813--50325644	911	2.0	912	99	0	3648	38	12	11	37	1.80
50334333--50334369	14	2.5	14	91	8	56	2	16	0	81	0.81
50337449--50337511	27	2.3	27	81	5	74	28	25	33	12	1.92
50337478--50337706	24	9.3	24	85	5	251	26	24	31	16	1.96
50337451--50337706	51	5.1	50	86	3	261	26	25	32	16	1.96
50337608--50337698	27	3.5	27	80	8	107	24	25	28	21	1.99
50342472--50342516	17	2.5	18	85	7	56	31	4	22	42	1.73
50342584--50342681	49	2.0	49	100	0	196	36	18	20	24	1.94
50344080--50344139	21	3.0	20	88	9	70	41	18	25	15	1.89
50344094--50344139	21	2.2	21	96	0	83	39	19	26	15	1.91
50345844--50345928	26	3.3	27	74	8	79	42	5	18	32	1.75
50345860--50345989	13	10.0	13	66	6	66	43	3	19	34	1.67
50345918--50345971	27	2.1	26	83	13	67	46	0	16	37	1.48
50355384--50355591	24	8.4	24	83	6	209	26	25	32	16	1.96
50355425--50355488	12	5.3	12	67	14	51	28	26	34	10	1.90
50355387--50355591	48	4.1	50	86	3	247	26	24	32	16	1.96
50355493--50355583	27	3.5	27	80	8	107	24	25	28	21	1.99
50358612--50358661	3	16.7	3	83	8	66	38	0	2	60	1.09
50359576--50359659	21	4.0	21	89	4	116	15	21	25	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50359576--50359659	44	2.0	41	86	6	114	15	21	25	38	1.92
50370001--50370035	4	8.8	4	100	0	70	25	0	22	51	1.48
50374510--50374549	20	2.0	20	90	0	62	40	5	22	32	1.76
50377236--50377264	2	14.5	2	100	0	58	48	0	0	51	1.00
50383771--50383810	2	20.0	2	100	0	80	0	50	0	50	1.00
50394656--50394688	12	2.8	12	90	4	50	6	18	33	42	1.75
50396514--50396553	16	2.5	16	91	0	62	37	35	2	25	1.69
50397987--50398084	17	5.4	17	64	13	52	32	4	14	48	1.62
50398002--50398093	17	5.0	18	66	15	62	34	4	15	45	1.66
50397982--50398093	37	3.0	37	90	0	179	33	4	15	46	1.66
50398091--50398180	9	9.6	9	80	9	99	26	8	25	38	1.85
50398091--50398182	20	4.8	20	82	7	111	26	8	25	40	1.84
50398098--50398182	29	2.9	29	78	13	102	24	8	27	40	1.83
50398239--50398299	29	2.1	29	81	0	68	42	6	16	34	1.74
50416270--50416314	18	2.4	19	81	3	56	46	37	6	8	1.61
50416282--50416318	19	1.9	19	89	10	58	45	32	5	16	1.70
50432116--50432162	15	3.2	14	80	11	58	65	0	2	31	1.04
50435177--50435295	38	3.1	38	66	17	111	42	18	11	26	1.85
50435157--50435305	76	2.0	76	100	0	298	41	17	11	29	1.84
50448372--50448405	18	1.9	18	88	5	52	29	0	5	64	1.17
50448471--50449023	276	2.0	277	99	0	1099	39	12	15	33	1.84
50457468--50457505	20	1.9	20	88	0	58	47	28	5	18	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50457410--50457594	67	3.0	60	85	10	230	39	16	8	35	1.79
50457481--50457594	59	1.9	58	91	1	183	38	15	8	36	1.79
50460256--50460429	85	2.0	85	92	0	285	27	20	14	37	1.92
50464423--50464458	7	5.1	7	90	10	56	38	0	2	58	1.13
50466750--50466789	3	13.3	3	100	0	80	67	0	32	0	0.91
50473396--50473642	123	2.0	124	99	0	487	44	11	6	37	1.67
50474756--50474783	9	3.1	9	100	0	56	32	0	10	57	1.33
50474672--50475017	68	5.1	68	97	0	642	41	4	8	46	1.54
50474824--50474851	9	3.1	9	100	0	56	32	0	10	57	1.33
50474892--50474919	9	3.1	9	100	0	56	32	0	10	57	1.33
50474960--50474987	9	3.1	9	100	0	56	32	0	10	57	1.33
50475195--50475265	31	2.2	33	82	10	83	22	30	14	32	1.93
50476289--50476446	56	2.8	56	75	4	149	27	12	30	29	1.93
50484098--50484132	6	5.8	6	100	0	70	17	17	48	17	1.81
50511895--50511951	12	5.1	12	72	21	52	36	5	19	38	1.74
50511895--50511959	33	2.0	33	96	0	121	35	6	20	38	1.77
50516572--50516660	25	3.5	26	76	14	96	46	4	0	49	1.22
50516572--50516660	27	3.5	26	76	14	87	46	4	0	49	1.22
50516579--50516662	24	3.4	23	73	17	62	46	4	0	48	1.23
50518938--50518991	16	3.4	16	87	5	74	38	0	24	37	1.56
50537641--50537702	31	2.2	30	83	13	78	56	3	1	38	1.25
50547238--50547279	21	2.0	21	86	9	59	50	9	0	40	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50551462--50551555	45	2.1	46	91	2	154	17	52	10	20	1.73
50551679--50551704	13	2.0	13	100	0	52	15	38	15	30	1.88
50553241--50553301	25	2.4	25	97	0	113	29	4	19	45	1.71
50553693--50553809	29	4.1	29	72	16	120	53	7	8	29	1.59
50554775--50554878	52	2.0	52	100	0	208	25	19	17	38	1.93
50556072--50556175	49	2.1	49	87	0	145	30	8	9	50	1.65
50557685--50557720	15	2.5	15	95	4	65	25	13	25	36	1.93
50557757--50557851	44	2.1	46	92	3	158	38	28	4	28	1.75
50557831--50557898	16	4.2	16	96	0	127	22	33	5	38	1.78
50558411--50558446	16	2.2	16	100	0	72	25	0	36	38	1.56
50559039--50559071	16	2.1	16	100	0	66	36	6	36	21	1.78
50559051--50559140	45	2.0	44	89	6	137	32	5	28	33	1.80
50559334--50559380	15	3.3	15	72	22	55	46	10	0	42	1.38
50559336--50559381	12	3.3	14	74	20	51	45	10	0	43	1.39
50562618--50562648	3	10.3	3	92	0	53	32	32	0	35	1.58
50562751--50562790	3	13.3	3	83	0	53	27	65	2	5	1.27
50579621--50579649	2	14.5	2	100	0	58	48	0	0	51	1.00
50579648--50579679	3	10.7	3	93	0	55	31	3	31	34	1.73
50597317--50597364	25	1.9	25	95	0	87	43	6	14	35	1.71
50598107--50598174	16	4.2	16	96	0	127	26	0	35	38	1.57
50598365--50598417	28	2.0	26	85	7	70	50	1	1	45	1.23
50598369--50598417	25	1.9	26	84	12	66	48	2	2	46	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50599202--50599231	13	2.3	13	100	0	60	60	13	6	20	1.55
50605662--50605688	14	1.9	14	100	0	54	7	29	0	62	1.22
50605752--50605776	6	4.2	6	100	0	50	16	0	20	64	1.30
50609563--50609625	28	2.2	30	83	11	78	49	0	3	47	1.17
50610517--50610549	17	2.0	17	88	5	50	57	3	0	39	1.14
50632757--50632783	11	2.5	11	100	0	54	77	7	0	14	0.97
50633895--50633921	11	2.5	11	100	0	54	77	7	0	14	0.97
50634113--50634616	96	5.2	96	100	0	1008	29	7	3	60	1.39
50634594--50634691	52	1.9	51	82	14	121	36	5	3	55	1.38
50639298--50639330	16	2.1	16	100	0	66	6	6	36	51	1.51
50660044--50660404	185	2.0	185	88	0	542	39	12	19	28	1.89
50660837--50661086	124	2.0	125	92	0	412	35	20	12	31	1.90
50667922--50667993	30	2.4	30	79	9	83	45	8	12	33	1.72
50670640--50670772	63	2.1	64	92	4	225	56	8	4	30	1.49
50677654--50677853	95	2.1	94	94	2	348	44	5	9	41	1.58
50682046--50682088	20	2.2	20	87	8	61	65	2	0	32	1.06
50685475--50685930	230	2.0	230	98	0	885	34	17	15	32	1.91
50698176--50698340	82	2.0	82	100	0	330	34	14	19	31	1.92
50702695--50702773	35	2.3	35	88	4	115	50	10	17	21	1.75
50704037--50704091	27	2.0	27	96	0	101	27	14	16	41	1.87
50704428--50704456	14	2.1	14	100	0	58	44	34	13	6	1.71
50705297--50706158	430	2.0	430	100	0	1724	38	19	10	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50711085--50711129	22	2.0	22	91	0	72	33	31	8	26	1.87
50714637--50714680	22	2.0	22	82	13	54	29	4	0	65	1.12
50725322--50725400	2	39.5	2	100	0	158	0	49	0	50	1.00
50731938--50732083	43	3.4	43	93	0	240	19	19	26	34	1.96
50731947--50732145	85	2.3	86	82	5	235	20	21	28	30	1.98
50732801--50732847	21	2.3	20	82	17	53	23	4	25	46	1.70
50732894--50732949	27	2.1	27	100	0	112	44	0	16	39	1.47
50738125--50738196	35	2.1	35	100	0	144	40	18	11	30	1.85
50741090--50741126	16	2.3	16	90	9	58	18	0	0	81	0.70
50748368--50748442	15	5.0	15	75	13	57	56	5	4	34	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163