genome.fa.s4.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  149  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49144076--49144203	64	2.0	64	92	3	213	46	9	4	39	1.57
49146659--49146724	32	2.1	32	100	0	132	21	9	18	51	1.73
49149673--49149729	30	1.9	30	85	0	78	26	12	19	42	1.86
49153319--49153347	6	4.8	6	100	0	58	31	0	51	17	1.45
49159404--49159582	23	8.0	23	88	3	240	41	21	17	18	1.90
49162356--49162458	31	3.4	30	75	12	102	37	2	5	53	1.40
49167515--49167557	10	4.3	10	78	0	50	69	9	0	20	1.15
49167526--49167578	19	2.7	20	85	11	65	60	7	0	32	1.25
49184750--49184799	19	2.6	20	84	12	61	32	22	4	42	1.72
49229510--49229564	21	2.7	20	77	5	56	36	18	10	34	1.86
49230493--49230594	50	2.0	50	86	0	141	39	16	13	30	1.88
49233004--49233192	51	3.7	51	80	6	213	26	15	24	32	1.96
49233004--49233193	102	1.9	102	86	4	276	26	15	25	32	1.96
49236202--49236286	40	2.2	39	85	10	111	69	3	2	24	1.16
49236213--49236286	20	3.6	20	74	17	71	68	4	0	27	1.07
49236434--49236464	16	1.9	16	100	0	62	51	0	3	45	1.17
49236679--49236733	21	2.6	21	75	11	58	60	0	0	40	0.97
49236762--49236819	30	1.9	31	82	3	73	41	1	5	51	1.34
49243485--49243510	3	8.7	3	100	0	52	30	0	0	69	0.89
49245914--49245971	30	1.9	31	85	3	82	43	6	0	50	1.29
49249289--49249354	33	2.0	33	100	0	132	30	12	18	39	1.87
49252488--49252650	88	1.9	89	83	7	217	33	6	13	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49267306--49267592	96	3.0	95	94	2	495	36	18	22	22	1.95
49273786--49273826	21	2.0	21	100	0	82	34	19	14	31	1.92
49292125--49292259	25	5.6	25	78	16	119	38	15	22	22	1.92
49292136--49292223	47	1.9	44	84	15	117	37	17	22	22	1.94
49294789--49294973	94	2.0	93	97	1	352	38	5	12	42	1.66
49305151--49305271	60	2.0	60	95	0	215	42	8	9	39	1.68
49305595--49305648	16	3.4	16	84	0	72	31	24	1	42	1.65
49310086--49312622	211	12.0	211	99	0	5065	35	16	16	30	1.91
49312642--49312715	13	5.7	13	80	0	76	39	27	8	25	1.84
49312642--49312715	26	2.8	26	79	0	94	39	27	8	25	1.84
49312882--49312910	3	9.7	3	100	0	58	31	0	0	68	0.89
49319550--49319647	32	3.2	32	64	14	87	28	11	23	36	1.89
49327630--49327662	17	1.9	17	93	0	57	54	0	6	39	1.25
49327971--49328015	20	2.3	20	82	14	58	53	0	0	46	1.00
49336233--49336258	7	3.7	7	100	0	52	88	0	11	0	0.52
49336640--49336711	31	2.3	31	85	4	92	38	11	22	27	1.88
49358419--49358550	41	3.2	41	67	16	128	35	18	22	23	1.95
49358425--49358589	82	2.0	82	98	0	321	30	20	24	24	1.98
49358439--49358566	40	3.2	40	64	12	107	32	19	25	23	1.98
49359512--49359569	23	2.6	23	83	2	64	51	1	3	43	1.28
49359642--49359669	9	3.1	9	100	0	56	32	0	10	57	1.33
49359558--49359931	68	5.5	68	98	0	716	39	4	8	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49359710--49359737	9	3.1	9	100	0	56	32	0	10	57	1.33
49359778--49359805	9	3.1	9	100	0	56	32	0	10	57	1.33
49359846--49359873	9	3.1	9	100	0	56	32	0	10	57	1.33
49360381--49360409	14	2.0	15	93	6	51	27	0	20	51	1.47
49363189--49363307	41	2.9	41	93	0	193	22	17	25	34	1.96
49366198--49366417	59	3.7	59	84	3	264	49	9	6	35	1.60
49373823--49373854	2	16.0	2	100	0	64	50	0	0	50	1.00
49403296--49403342	23	2.0	23	87	0	67	42	17	6	34	1.74
49408168--49408232	33	2.0	33	81	6	78	75	1	6	16	1.08
49409673--49409705	16	2.0	17	88	5	50	27	3	0	69	1.03
49421984--49422042	16	3.5	16	77	15	57	52	8	0	38	1.32
49422210--49422244	18	1.9	18	88	0	52	51	5	5	37	1.50
49422906--49422985	11	7.5	11	75	17	62	60	0	2	37	1.11
49422898--49423003	41	2.6	39	82	7	140	60	0	1	36	1.14
49423704--49423733	14	2.1	15	93	6	53	30	0	3	66	1.07
49424468--49424643	90	2.0	88	84	8	232	36	21	9	32	1.85
49424673--49424725	18	2.8	19	82	5	63	54	0	1	43	1.11
49424925--49424981	20	2.9	20	74	12	55	28	8	5	57	1.50
49430120--49430155	18	2.0	18	94	0	63	55	2	16	25	1.55
49430505--49430549	24	1.9	23	82	13	56	48	0	17	33	1.48
49432362--49432399	9	3.8	10	86	10	51	52	0	0	47	1.00
49443669--49443706	18	2.2	18	86	13	53	21	5	5	68	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49447905--49447931	1	27.0	1	100	0	54	100	0	0	0	0.00
49455696--49455750	26	2.2	25	81	12	60	38	5	3	52	1.42
49464144--49464188	23	2.0	23	82	8	56	57	2	0	40	1.11
49465657--49465726	30	2.3	30	97	2	131	34	8	18	38	1.81
49471301--49471373	33	2.2	33	82	4	94	26	49	9	15	1.74
49473891--49473921	3	10.7	3	93	6	55	70	0	29	0	0.87
49475620--49475679	22	2.7	22	81	2	66	13	28	6	51	1.66
49479328--49479372	21	2.1	22	84	12	58	37	6	15	40	1.74
49480945--49480988	18	2.4	18	100	0	88	52	22	20	4	1.65
49482099--49482163	30	2.2	28	77	20	69	50	0	1	47	1.10
49483002--49483052	24	2.1	24	89	10	77	76	1	21	0	0.88
49483005--49483054	18	2.8	17	88	8	73	78	2	20	0	0.86
49483005--49483054	6	8.3	6	79	16	59	78	2	20	0	0.86
49483916--49484049	37	3.6	36	74	16	105	37	10	7	44	1.67
49483948--49484029	35	2.4	33	75	6	83	35	7	7	50	1.58
49483951--49484097	18	8.2	18	72	15	99	33	9	9	47	1.68
49483978--49484086	56	1.9	56	81	3	130	35	8	9	46	1.66
49483972--49484097	19	6.8	19	72	12	100	34	9	9	46	1.69
49488321--49488471	82	1.8	82	94	2	268	38	10	11	39	1.77
49488579--49488626	20	2.3	20	75	3	51	43	0	4	52	1.20
49488581--49488626	18	2.3	20	82	10	51	45	0	4	50	1.21
49491395--49491435	19	2.1	20	86	4	57	60	0	4	34	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49499335--49499468	37	3.6	36	74	16	105	37	10	7	44	1.67
49499367--49499448	35	2.4	33	75	6	83	35	7	7	50	1.58
49499370--49499516	18	8.2	18	72	15	99	33	9	9	47	1.68
49499397--49499505	56	1.9	56	81	3	130	35	8	9	46	1.66
49499391--49499516	19	6.8	19	72	12	100	34	9	9	46	1.69
49501566--49501611	19	2.4	18	82	13	56	71	2	0	26	0.97
49503055--49503095	19	2.1	20	90	4	66	60	0	2	36	1.10
49507594--49507626	16	2.1	16	94	0	57	36	9	36	18	1.82
49524417--49524469	27	2.0	27	96	0	97	28	18	32	20	1.97
49524418--49524475	27	2.1	27	90	0	89	27	24	31	17	1.97
49527678--49527955	135	2.1	136	97	2	524	35	8	18	37	1.82
49543747--49543783	13	2.7	14	84	16	51	21	5	5	67	1.31
49543790--49543823	15	2.3	15	94	0	59	23	0	11	64	1.26
49550214--49550252	14	2.8	13	85	14	51	76	5	0	17	0.96
49558438--49558497	26	2.2	28	82	11	72	55	5	1	38	1.32
49569576--49569632	19	3.1	17	72	20	51	52	1	1	43	1.21
49587013--49587047	2	18.0	2	88	5	54	54	0	0	45	0.99
49596212--49596237	4	6.5	4	100	0	52	0	0	23	76	0.78
49598613--49598652	17	2.4	17	87	4	55	77	0	5	17	0.94
49614347--49614395	21	2.4	20	83	6	62	40	6	28	24	1.79
49616577--49616798	114	1.9	114	100	0	444	40	14	3	40	1.64
49617940--49617964	13	1.9	13	100	0	50	68	24	0	8	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49618224--49618286	26	2.4	26	84	5	65	17	25	22	34	1.95
49618332--49618380	24	2.0	24	96	0	89	16	28	20	34	1.94
49620412--49620465	24	2.2	24	96	0	99	53	7	3	35	1.47
49622378--49622429	24	2.2	24	82	0	59	51	11	3	32	1.56
49625177--49625223	17	2.8	17	78	18	53	40	0	0	59	0.97
49631694--49631771	30	2.7	30	94	4	133	47	14	11	26	1.78
49639576--49639644	27	2.6	27	93	4	113	40	10	1	47	1.46
49639728--49639794	27	2.5	27	87	0	89	22	28	32	16	1.95
49639852--49640018	38	4.5	37	78	14	148	65	0	32	1	1.03
49639862--49640016	72	2.2	72	80	9	174	65	0	32	1	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163