genome.fa.s4.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  17  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5768456--5768662	45	4.6	45	72	5	159	29	19	25	24	1.98
5768519--5768695	89	2.0	89	92	0	291	30	20	23	25	1.98
5768456--5768780	134	2.4	134	79	2	323	29	19	24	26	1.98
5768677--5768872	89	2.2	89	84	5	261	31	18	21	29	1.97
5768722--5768866	44	3.3	44	69	5	130	30	18	21	29	1.97
5769235--5769348	44	2.6	44	85	2	140	33	14	23	28	1.94
5770924--5770993	23	3.0	22	73	15	61	31	8	8	51	1.63
5771969--5772116	3	48.7	3	69	9	68	32	4	4	58	1.40
5772640--5772693	2	28.5	2	83	10	60	40	5	0	53	1.24
5772607--5772693	35	2.5	35	84	0	102	34	8	2	55	1.42
5772650--5772699	25	2.0	25	84	7	66	36	10	0	54	1.34
5776887--5776924	18	2.1	19	90	5	60	50	0	10	39	1.37
5777064--5777163	3	33.3	3	100	0	200	67	0	0	33	0.91
5778864--5778895	7	4.7	7	92	7	57	87	12	0	0	0.54
5778864--5778895	13	2.4	13	94	5	55	87	12	0	0	0.54
5778865--5778906	13	3.2	13	83	16	50	83	11	2	2	0.84
5778849--5778906	20	2.8	20	77	15	64	81	10	5	3	0.97
5779219--5779269	20	2.6	19	76	14	50	7	5	50	35	1.55
5783454--5783615	72	2.2	72	81	0	207	34	19	14	32	1.91
5786089--5786114	7	3.7	7	100	0	52	57	0	42	0	0.98
5789760--5789801	21	2.1	20	86	8	59	47	9	0	42	1.36
5790730--5790780	27	1.9	27	88	4	77	68	7	5	17	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5794413--5794729	72	4.4	72	86	1	438	35	19	14	29	1.91
5794417--5794729	144	2.2	144	96	1	574	35	19	14	30	1.91
5820645--5821006	178	2.0	179	99	0	717	49	9	9	32	1.66
5823159--5823202	22	2.0	22	82	8	54	0	27	4	68	1.09
5823166--5823244	6	12.5	6	71	14	52	0	21	5	73	1.02
5826435--5826583	74	2.0	75	98	1	291	55	14	4	26	1.57
5827770--5827813	2	23.0	2	86	9	65	47	2	0	50	1.13
5828186--5828231	23	2.1	22	84	8	58	52	2	0	45	1.13
5830316--5830350	18	1.9	18	88	0	52	31	8	8	51	1.63
5835664--5835697	14	2.5	14	95	4	61	50	35	0	14	1.44
5835787--5835827	11	3.6	11	86	3	55	80	0	17	2	0.82
5837456--5837691	126	1.9	126	85	0	328	27	22	27	21	1.99
5842843--5842888	3	15.3	3	90	0	74	32	36	2	28	1.69
5856306--5856330	11	2.3	11	100	0	50	40	32	0	28	1.57
5856589--5856618	16	1.9	15	93	6	51	0	20	60	20	1.37
5866590--5866658	24	2.8	24	78	6	84	42	2	0	55	1.15
5866664--5866693	16	1.9	15	93	6	51	0	20	60	20	1.37
5868072--5868279	104	2.0	104	100	0	416	38	10	19	31	1.86
5868554--5868605	25	2.1	25	88	0	77	19	28	21	30	1.97
5868562--5868611	25	2.0	25	92	0	82	20	32	16	32	1.94
5868562--5868626	25	2.6	25	82	4	69	20	29	16	33	1.95
5868628--5868718	25	3.6	25	77	11	114	27	28	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5868607--5868737	50	2.6	50	82	9	160	24	29	15	31	1.95
5868628--5868737	25	4.4	25	76	11	109	26	29	15	29	1.96
5890024--5890334	156	2.0	153	94	1	550	31	21	16	30	1.95
5892810--5892868	20	2.8	20	75	14	57	13	5	3	77	1.05
5911734--5911779	24	1.9	24	86	0	65	45	0	41	13	1.43
5911731--5911794	33	1.9	33	83	0	83	42	1	40	15	1.57
5918817--5918875	27	2.1	28	81	3	66	66	3	3	27	1.24
5929010--5929068	17	3.3	18	74	9	59	62	5	0	32	1.17
5929010--5929047	19	2.1	19	90	5	60	63	7	0	28	1.23
5929182--5929211	3	10.0	3	100	0	60	33	0	0	66	0.92
5930415--5930463	16	3.1	16	93	0	89	34	6	36	22	1.79
5930697--5930731	18	2.0	17	88	5	52	54	0	0	45	0.99
5933644--5933690	23	2.0	23	95	0	85	46	17	31	4	1.67
5936379--5936404	13	2.0	13	100	0	52	23	23	23	30	1.99
5947474--5947517	23	1.9	23	86	9	63	36	13	9	40	1.76
5952360--5952417	23	2.5	23	83	8	73	43	0	1	55	1.10
5952981--5953041	24	2.4	26	73	15	65	72	6	4	16	1.24
5956890--5956940	20	2.5	20	100	0	102	33	19	15	31	1.93
5968607--5968639	17	1.9	17	93	0	57	48	3	6	42	1.43
5968992--5969018	2	13.5	2	100	0	54	48	0	0	51	1.00
5974574--5974691	42	2.8	42	88	0	173	31	22	22	23	1.98
5974663--5974800	42	3.3	42	86	4	206	23	22	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5974622--5974798	84	2.1	84	83	0	219	25	22	20	31	1.98
5975032--5975076	21	2.1	21	83	0	54	2	46	17	33	1.61
5979147--5979185	19	2.1	19	85	9	53	30	0	17	51	1.46
5979049--5979488	87	4.9	89	79	10	400	31	1	20	46	1.60
5979234--5979272	19	2.1	19	85	9	53	30	0	17	51	1.46
5979047--5979613	43	13.7	43	72	16	355	32	1	19	46	1.60
5979499--5979597	38	2.6	37	87	7	128	39	2	14	44	1.56
5979620--5979669	21	2.5	20	81	18	61	36	0	16	48	1.46
5979042--5979646	9	67.8	9	70	17	374	32	1	19	45	1.60
5981391--5981497	53	2.0	53	90	0	169	37	22	16	23	1.94
5982198--5982222	7	3.6	7	100	0	50	48	52	0	0	1.00
5983175--5983210	18	2.0	18	89	10	56	69	5	0	25	1.10
5983179--5983218	18	2.2	19	86	4	55	70	5	0	25	1.08
5983317--5983951	113	5.6	113	78	7	565	26	24	17	30	1.97
5983314--5983966	114	5.8	112	78	6	543	26	24	18	30	1.98
5983539--5983983	229	1.9	227	84	4	590	26	23	18	31	1.97
5994714--5994741	2	14.0	2	100	0	56	50	0	0	50	1.00
6000802--6000844	16	2.5	18	88	7	63	37	0	0	62	0.95
6003103--6003149	22	2.1	22	84	0	58	68	14	10	6	1.38
6007506--6007579	37	2.0	37	100	0	148	32	16	13	37	1.87
6007959--6008113	76	2.0	77	98	1	303	52	5	0	41	1.23
6012592--6012644	27	2.0	27	100	0	106	33	13	22	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6025999--6026078	25	3.2	25	77	5	74	20	26	18	35	1.95
6029346--6029401	22	2.5	22	85	0	76	41	17	26	14	1.88
6029340--6029470	25	5.5	25	80	7	123	37	17	24	20	1.94
6030336--6030375	13	3.2	13	85	7	55	0	30	0	70	0.88
6030486--6030532	23	2.0	23	91	0	76	42	10	4	42	1.59
6033616--6033686	31	2.3	31	78	9	74	26	7	19	46	1.75
6034253--6034338	38	2.3	38	82	8	104	48	2	4	44	1.36
6034365--6034440	25	3.1	23	76	12	71	68	1	25	5	1.18
6034385--6034438	21	2.5	22	85	8	76	66	1	25	5	1.23
6035615--6035657	22	2.0	22	90	4	70	44	4	25	25	1.73
6043896--6043921	7	3.7	7	100	0	52	26	15	46	11	1.80
6057006--6057030	5	5.0	5	100	0	50	40	0	40	20	1.52
6069161--6069198	19	2.0	19	100	0	76	36	15	10	36	1.82
6072506--6072562	27	2.1	27	96	0	105	33	19	17	29	1.95
6080988--6081022	18	1.9	18	88	0	52	40	2	2	54	1.30
6087344--6087403	26	2.2	28	88	11	90	40	3	6	50	1.45
6087624--6087654	16	1.9	16	93	0	53	61	3	3	32	1.28
6090887--6090914	14	2.0	14	100	0	56	21	21	7	50	1.72
6092975--6093214	113	2.1	113	97	0	453	25	21	20	33	1.97
6094317--6094361	23	2.0	23	86	8	65	40	15	2	42	1.59
6095000--6095212	38	5.6	38	99	0	417	38	15	8	37	1.78
6095000--6095212	19	11.2	19	93	0	372	38	15	8	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6094946--6095212	57	4.6	59	86	7	352	38	15	8	37	1.79
6105733--6105809	36	2.2	35	86	4	102	29	7	28	33	1.85
6111191--6111263	31	2.4	31	88	4	103	39	8	4	47	1.52
6111899--6111944	4	11.5	4	100	0	92	50	26	0	23	1.50
6118059--6118099	17	2.4	17	87	0	64	41	7	0	51	1.30
6123700--6123743	22	2.0	21	91	4	70	40	4	13	40	1.65
6126484--6126522	21	1.9	21	89	5	62	33	20	2	43	1.65
6131948--6132340	133	3.0	130	82	4	439	22	18	19	39	1.92
6133769--6133808	20	2.0	20	85	0	53	67	0	2	30	1.04
6136830--6136886	6	9.5	6	82	0	51	0	38	24	36	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163