genome.fa.s4.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  47  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15165343--15165473	42	3.1	42	92	0	208	48	12	26	12	1.77
15177689--15177714	12	2.2	12	100	0	52	46	15	7	30	1.74
15178006--15178064	25	2.4	24	81	13	66	57	1	3	37	1.25
15181641--15181700	31	1.9	31	86	6	86	48	8	8	35	1.63
15181814--15181980	68	2.6	62	82	17	170	44	8	6	39	1.62
15181880--15181907	9	3.1	9	100	0	56	57	10	0	32	1.33
15181849--15181991	68	2.1	66	97	2	268	43	9	5	41	1.60
15181980--15182021	16	2.6	16	92	0	66	42	7	2	47	1.43
15181995--15182044	22	2.3	22	85	0	64	44	2	2	52	1.24
15182018--15182049	17	1.9	17	93	6	57	56	0	0	43	0.99
15182176--15182287	57	2.0	57	100	0	224	32	21	23	23	1.98
15192726--15193079	185	1.9	184	87	2	523	24	29	14	31	1.94
15194034--15194090	26	2.2	26	87	9	82	52	3	14	29	1.58
15195206--15195631	123	3.4	123	86	3	647	30	15	21	32	1.95
15198358--15198621	23	11.5	23	99	0	510	26	0	21	51	1.48
15198697--15198922	70	3.2	70	93	2	375	46	12	0	39	1.46
15198725--15198922	25	8.3	24	69	15	135	45	13	0	40	1.47
15199432--15199471	18	2.2	18	95	0	71	40	7	30	22	1.81
15201143--15201172	15	2.0	15	93	0	51	63	6	0	30	1.20
15201240--15201316	11	6.9	11	72	21	63	45	1	27	25	1.61
15201240--15201315	22	3.4	23	82	8	77	44	1	27	26	1.62
15205994--15206018	3	8.3	3	100	0	50	68	0	32	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15215103--15215326	111	2.0	112	97	2	425	43	9	12	33	1.75
15215998--15216022	3	8.3	3	100	0	50	68	0	32	0	0.90
15220180--15220219	3	13.7	3	84	5	55	67	0	0	32	0.91
15222634--15222730	43	2.3	43	83	3	124	22	38	24	14	1.92
15223714--15223796	43	1.9	43	90	0	130	22	26	2	48	1.63
15225841--15225893	26	2.0	26	96	0	97	39	24	3	32	1.73
15235373--15235414	21	2.0	21	90	9	68	38	0	19	42	1.51
15235851--15235927	26	3.0	26	79	7	88	18	23	24	33	1.96
15239248--15239278	16	1.9	16	93	0	53	29	16	19	35	1.93
15243471--15243513	17	2.6	17	88	3	61	18	9	25	46	1.79
15245265--15245310	22	2.1	21	84	11	58	45	21	2	30	1.64
15245491--15245550	22	2.7	22	84	5	77	35	18	11	35	1.87
15246101--15246133	17	1.9	17	93	0	57	36	24	12	27	1.91
15256250--15256284	14	2.5	14	95	0	61	57	0	31	11	1.34
15256720--15257008	96	3.0	97	84	2	348	40	2	16	40	1.60
15257006--15257345	126	2.8	123	86	7	453	33	17	20	28	1.96
15259485--15262433	952	3.1	951	94	0	5074	28	20	19	31	1.97
15264071--15264106	2	18.0	2	100	0	72	50	0	0	50	1.00
15265253--15265443	106	1.8	106	89	2	303	27	18	22	31	1.97
15275748--15275820	19	3.8	19	96	0	137	36	16	9	36	1.81
15275725--15275820	38	2.4	39	89	6	140	38	16	8	36	1.79
15276332--15276493	45	3.6	45	79	10	161	26	20	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15276511--15276600	44	2.0	44	82	4	110	26	22	20	31	1.98
15276410--15276811	211	1.9	212	87	2	585	25	22	20	31	1.98
15277197--15277318	44	2.8	44	87	9	178	27	24	19	28	1.99
15277285--15277991	88	8.0	88	88	1	556	20	23	27	28	1.99
15277351--15277839	44	11.1	44	65	7	177	21	23	26	27	1.99
15277329--15277982	176	3.7	176	88	2	965	20	23	27	28	1.99
15277329--15277983	264	2.5	263	89	1	965	20	23	27	28	1.99
15279205--15279246	20	2.1	21	87	12	63	21	0	4	73	1.01
15280151--15280211	26	2.3	26	83	5	70	57	4	14	22	1.57
15284756--15284870	19	5.7	21	81	8	89	40	18	6	34	1.75
15284792--15284883	19	4.8	19	90	0	148	38	18	8	34	1.82
15284769--15284881	38	2.9	38	90	5	163	39	17	7	34	1.79
15288397--15288555	48	3.1	53	80	10	195	25	11	27	35	1.91
15288415--15288597	95	1.9	95	83	11	235	23	13	28	34	1.92
15288453--15288597	48	3.0	48	91	3	231	22	13	28	35	1.92
15293682--15293733	20	2.5	20	73	14	61	28	28	0	42	1.56
15293769--15293822	24	2.3	24	80	3	65	27	1	1	68	1.10
15298794--15298871	27	2.9	26	80	5	66	28	17	23	30	1.97
15314143--15314198	28	2.0	28	92	0	94	37	10	25	26	1.88
15315709--15315758	22	2.4	20	75	21	57	26	2	0	72	0.96
15321369--15321481	47	2.4	47	90	0	172	36	13	15	34	1.87
15324286--15324337	17	3.2	16	79	12	61	73	5	0	21	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15341126--15341150	5	5.0	5	100	0	50	60	20	0	20	1.37
15342382--15342447	9	7.4	9	86	3	89	42	22	9	25	1.83
15349914--15349985	16	4.6	16	66	15	51	37	5	1	55	1.32
15366719--15366755	19	1.9	19	89	10	58	40	8	8	43	1.64
15367206--15367250	21	2.1	22	83	4	56	24	2	2	71	1.09
15370193--15370261	31	2.2	31	79	5	77	55	4	5	34	1.44
15371887--15371926	21	1.9	21	84	0	53	45	22	7	25	1.78
15375827--15375895	31	2.2	31	79	5	77	55	4	5	34	1.44
15378952--15379020	31	2.2	31	79	5	77	55	4	5	34	1.44
15387389--15387561	51	3.4	50	78	8	170	25	14	28	31	1.95
15387415--15387554	50	2.8	51	85	5	194	24	15	28	32	1.95
15387477--15387558	26	3.2	26	66	22	73	23	14	28	34	1.94
15388839--15388937	46	2.2	43	81	12	110	24	19	24	32	1.97
15392112--15392177	22	3.0	22	80	8	64	16	25	24	33	1.96
15392161--15392223	22	2.8	23	85	2	83	20	28	19	31	1.97
15403304--15403352	10	5.1	10	73	16	50	46	0	2	51	1.12
15403567--15403626	27	2.2	27	90	0	93	28	28	3	40	1.72
15403594--15403644	16	3.2	16	86	5	68	31	25	3	39	1.74
15406475--15406532	30	1.9	30	100	0	116	37	17	25	18	1.93
15428632--15428711	31	2.5	31	82	6	90	52	12	10	25	1.70
15428663--15428729	29	2.2	30	84	5	82	53	10	13	22	1.69
15437352--15437385	16	2.2	16	89	5	52	32	0	11	55	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15437973--15438126	56	2.8	55	84	3	202	46	14	9	29	1.76
15441155--15441311	56	2.8	56	90	0	242	45	15	8	29	1.76
15442941--15442980	7	5.9	7	85	5	55	17	0	0	82	0.67
15442941--15442980	20	2.0	20	85	9	55	17	0	0	82	0.67
15446926--15446994	20	3.5	19	74	16	68	21	1	1	75	0.96
15446926--15447001	21	3.8	20	71	22	61	22	1	2	73	1.03
15446942--15447004	11	5.5	12	75	22	55	25	0	3	71	1.01
15446927--15447010	40	2.1	39	82	10	100	22	2	2	72	1.08
15447000--15447046	12	3.9	12	100	0	94	17	14	0	68	1.22
15447000--15447046	18	2.6	18	100	0	94	17	14	0	68	1.22
15449648--15449769	42	2.9	42	80	0	127	40	18	23	17	1.90
15449735--15449790	21	2.7	21	80	5	60	48	16	16	19	1.82
15449670--15449790	42	2.9	42	77	2	118	42	16	22	18	1.88
15461928--15461960	4	8.2	4	100	0	66	51	24	0	24	1.48
15463700--15463873	88	2.0	90	82	4	219	39	19	6	33	1.78
15464101--15464176	10	7.6	10	70	16	50	36	2	2	57	1.26
15464104--15464155	19	2.8	20	80	11	65	30	3	1	63	1.23
15464123--15464187	29	2.2	29	81	7	78	35	1	3	60	1.22
15464103--15464185	30	2.8	29	76	10	87	34	2	3	59	1.28
15464233--15464419	88	2.1	87	80	6	209	34	6	14	43	1.73
15465975--15466017	16	2.6	16	81	3	50	44	4	18	32	1.71
15466749--15466775	11	2.5	11	100	0	54	85	0	0	14	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15467138--15467213	6	12.7	6	71	20	52	7	0	47	44	1.32
15467152--15467213	28	2.2	29	91	2	99	6	0	46	46	1.28
15467243--15467271	15	1.9	15	100	0	58	10	0	41	48	1.37
15467245--15467278	15	2.3	15	89	0	50	11	0	47	41	1.40
15467447--15467493	24	2.0	24	91	0	76	10	23	10	55	1.65
15472336--15472418	43	1.9	43	85	0	112	49	1	22	26	1.57
15474175--15474223	25	2.0	25	91	0	80	30	26	24	18	1.98
15474190--15474281	24	3.7	25	73	17	68	35	21	25	17	1.95
15476375--15476475	49	2.1	49	88	0	148	42	6	23	26	1.79
15498751--15499052	151	2.0	151	98	0	586	31	17	16	34	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163