genome.fa.s4.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  108  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34756915--34756945	16	1.9	16	93	0	53	35	6	9	48	1.62
34757519--34757705	71	2.6	71	87	7	200	41	5	4	48	1.47
34757553--34757705	71	2.1	73	96	3	283	39	6	3	49	1.47
34758257--34758284	5	5.6	5	100	0	56	17	0	0	82	0.68
34759802--34759834	9	3.3	10	87	12	50	66	6	0	27	1.15
34763418--34763448	12	2.7	12	95	5	55	29	12	0	58	1.35
34765362--34765392	11	2.8	11	90	0	53	64	0	0	35	0.94
34765346--34765392	22	2.1	23	88	11	71	68	0	2	29	1.02
34766886--34766933	25	1.9	25	83	8	62	66	2	2	29	1.14
34767039--34767696	335	2.0	335	99	0	1307	32	12	9	46	1.72
34767846--34767921	20	3.5	20	67	25	55	52	1	5	40	1.32
34772381--34772414	11	3.2	11	87	8	52	0	8	8	82	0.85
34774078--34774107	12	2.4	13	94	5	53	46	10	16	26	1.78
34781086--34781119	16	2.0	17	88	11	52	55	2	0	41	1.15
34785223--34785267	20	2.2	21	88	4	65	31	0	2	66	1.04
34785271--34785316	20	2.2	20	85	11	58	34	0	2	63	1.07
34785244--34785486	121	2.0	122	99	0	479	34	3	8	54	1.47
34785392--34785437	20	2.2	20	85	11	58	34	0	2	63	1.07
34789301--34789331	9	3.4	9	90	0	53	25	9	22	41	1.84
34795113--34795151	6	6.5	6	93	0	60	0	58	0	41	0.98
34795112--34795154	18	2.3	18	92	4	68	0	58	0	41	0.98
34798260--34798318	18	3.4	17	88	9	84	40	1	1	55	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34798482--34798536	21	2.6	21	88	8	85	29	38	9	23	1.85
34802478--34802520	3	14.3	3	100	0	86	67	0	0	32	0.91
34808693--34808783	3	29.7	3	82	12	114	62	1	5	30	1.25
34812270--34812307	20	1.9	20	94	0	67	34	10	5	50	1.59
34813443--34813480	14	2.9	14	84	7	53	73	5	10	10	1.23
34814958--34815004	20	2.3	21	85	10	62	14	6	4	74	1.17
34815632--34815672	20	2.0	21	86	13	59	19	24	0	56	1.42
34837450--34837545	25	3.8	25	74	8	61	37	13	25	23	1.92
34847587--34847641	25	2.2	26	80	9	60	70	0	23	5	1.07
34847599--34847664	35	1.9	34	87	9	98	69	0	28	1	0.97
34847604--34847664	14	3.9	14	73	24	50	70	0	27	1	0.97
34849799--34849851	21	2.6	20	82	11	63	56	0	3	39	1.17
34849921--34849959	21	1.9	21	89	5	62	64	0	0	35	0.94
34849921--34849982	19	3.2	19	80	13	63	62	0	1	35	1.05
34850907--34850967	27	2.3	27	91	0	95	27	36	8	27	1.85
34868517--34868698	44	4.1	44	69	10	147	30	23	17	28	1.97
34868429--34869076	132	4.9	132	90	1	944	30	22	18	28	1.97
34869109--34869680	44	13.2	44	73	8	293	28	21	19	30	1.98
34869163--34869579	89	4.8	90	72	11	319	27	22	20	29	1.98
34869148--34869680	261	2.0	261	90	0	823	27	22	19	30	1.98
34869086--34869535	217	2.1	217	84	5	590	28	22	20	29	1.98
34869098--34869680	217	2.7	213	80	8	547	28	21	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34869667--34870320	132	5.0	132	94	0	1056	24	24	20	30	1.99
34871590--34871644	21	2.6	22	86	11	71	3	5	7	83	0.89
34872363--34872419	25	2.3	25	78	6	62	57	7	12	22	1.58
34876424--34876654	98	2.4	98	95	1	419	38	23	10	27	1.88
34877374--34877420	20	2.3	20	81	0	58	55	0	6	38	1.26
34877260--34877467	114	1.8	114	84	4	285	49	5	10	34	1.61
34881517--34881573	25	2.4	23	82	8	69	59	3	1	35	1.25
34888523--34888571	25	2.0	25	88	8	73	38	14	14	32	1.86
34896475--34896543	29	2.4	29	78	4	77	53	5	11	28	1.60
34897365--34897400	8	4.4	8	86	6	54	38	0	0	61	0.96
34897341--34897404	17	3.8	17	75	8	67	39	1	1	57	1.17
34897370--34897410	17	2.3	17	87	8	55	46	0	0	53	1.00
34898135--34898393	129	2.0	130	98	0	502	35	11	12	40	1.79
34899406--34899432	6	4.5	6	100	0	54	18	0	14	66	1.25
34899562--34899618	29	1.9	30	85	3	80	49	8	5	36	1.57
34900160--34900202	22	2.0	22	90	0	68	9	13	27	48	1.73
34900274--34900669	42	9.4	42	90	3	609	32	24	19	23	1.98
34900274--34900669	85	4.7	85	92	3	683	32	24	19	23	1.98
34901757--34901792	8	4.4	8	86	6	54	38	0	0	61	0.96
34901733--34901796	17	3.8	17	75	8	67	39	1	1	57	1.17
34901762--34901802	17	2.3	17	87	8	55	46	0	0	53	1.00
34903669--34903695	6	4.5	6	100	0	54	18	0	14	66	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34903825--34903881	29	1.9	30	85	3	80	49	8	5	36	1.57
34904423--34904465	22	2.0	22	90	0	68	9	13	27	48	1.73
34904555--34904720	43	4.0	41	87	9	230	33	25	19	21	1.97
34904537--34904720	82	2.2	85	85	8	243	30	25	20	23	1.98
34905067--34905112	12	3.8	12	82	0	56	2	34	15	47	1.57
34912972--34913065	40	2.4	39	81	3	98	13	20	23	42	1.88
34914782--34914823	17	2.4	18	80	11	52	64	2	9	23	1.35
34914892--34914921	7	4.4	7	91	8	53	86	0	13	0	0.57
34924861--34924926	35	1.9	35	84	9	91	77	1	10	10	1.07
34924940--34925003	16	4.1	16	70	8	51	76	7	3	12	1.11
34924958--34925028	6	11.8	6	83	5	72	70	11	5	12	1.32
34924988--34925033	18	2.6	18	89	0	65	65	10	6	17	1.45
34925919--34925959	7	6.0	7	80	13	50	68	0	17	14	1.22
34925907--34925936	15	1.9	16	93	6	53	70	3	13	13	1.30
34927167--34927674	100	5.1	100	88	0	667	31	24	19	24	1.98
34927181--34927743	50	11.4	50	71	6	329	32	23	19	24	1.98
34933713--34933757	3	15.3	3	78	21	51	66	0	2	31	1.04
34933722--34934229	254	2.0	254	97	0	964	37	11	13	37	1.80
34934877--34935004	43	3.0	43	77	15	147	22	18	28	30	1.98
34936295--34936321	4	6.8	4	100	0	54	22	0	0	77	0.76
34945036--34945164	11	12.4	11	70	20	91	37	2	0	59	1.10
34945028--34945092	31	2.1	30	97	2	121	36	1	0	61	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34945035--34945165	50	2.6	49	78	12	147	38	2	0	59	1.10
34953308--34953348	6	6.8	6	97	0	64	9	17	56	17	1.67
34953767--34953841	27	2.8	27	83	4	89	22	20	33	24	1.97
34959194--34959219	4	6.5	4	100	0	52	0	23	0	76	0.78
34959215--34959249	3	12.3	3	88	11	56	0	31	0	68	0.90
34959211--34959250	11	3.7	11	90	3	64	0	32	0	67	0.91
34959210--34959254	14	3.1	14	87	3	63	0	31	0	68	0.89
34959195--34959261	14	4.9	14	82	13	61	0	31	0	68	0.90
34959375--34959439	27	2.4	27	86	0	85	18	30	23	27	1.97
34959375--34959450	27	2.8	26	78	7	71	19	30	23	26	1.98
34974729--34975676	315	3.0	315	94	0	1673	34	23	13	28	1.93
34979089--34979296	51	4.2	51	84	8	295	32	14	21	31	1.94
34979136--34979279	44	3.1	44	84	13	198	31	15	20	32	1.94
34979078--34979279	95	2.1	95	93	0	341	31	15	20	32	1.94
34979310--34979415	49	2.2	47	81	6	115	23	14	31	31	1.94
34980592--34980706	42	2.7	42	80	0	131	43	17	23	15	1.87
34983586--34983765	36	5.0	37	88	6	280	39	13	18	28	1.88
34983587--34983765	72	2.5	72	97	0	331	39	12	18	29	1.88
34984196--34984273	39	2.0	39	100	0	156	23	12	17	46	1.83
34989630--34989670	19	2.2	19	86	0	55	39	2	2	56	1.26
34993240--34993983	371	2.0	371	96	0	1371	31	21	16	30	1.95
35002938--35003000	26	2.4	26	82	7	83	55	0	7	36	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35006172--35006201	15	2.0	15	93	0	51	43	6	6	43	1.57
35006853--35006885	16	2.1	16	94	0	57	33	18	0	48	1.48
35013905--35014561	107	6.2	108	81	9	791	39	15	19	26	1.91
35014231--35014333	48	2.1	48	80	3	118	38	16	22	22	1.92
35014812--35015090	106	2.8	94	82	10	292	34	16	13	35	1.87
35014812--35014984	96	1.8	93	91	3	283	35	15	11	37	1.83
35014900--35015218	106	3.0	105	81	8	382	36	18	14	31	1.90
35018064--35018108	6	7.3	6	85	5	63	17	2	42	37	1.62
35018294--35018577	125	2.3	125	90	1	426	31	19	20	28	1.97
35020035--35020074	18	2.2	18	90	0	62	42	5	30	22	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163