genome.fa.s4.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  155  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51601641--51601851	89	2.4	89	81	1	244	26	25	18	30	1.97
51601728--51601927	45	4.5	43	72	9	150	28	24	18	29	1.98
51612354--51612390	3	12.3	3	94	0	65	64	0	2	32	1.07
51614049--51614086	9	4.1	9	84	15	51	21	2	0	76	0.91
51615615--51615642	2	14.0	2	100	0	56	50	0	0	50	1.00
51619337--51619379	4	10.0	4	80	14	50	74	0	23	2	0.93
51619337--51619379	13	3.3	13	83	9	61	74	0	23	2	0.93
51623199--51623254	16	3.5	16	80	7	69	66	3	7	23	1.33
51628509--51628728	42	4.9	44	75	17	168	25	23	20	30	1.99
51628610--51628747	43	3.2	42	88	7	190	23	22	21	31	1.98
51636954--51637015	31	2.0	32	87	3	90	45	4	0	50	1.23
51638968--51638996	7	4.1	7	100	0	58	44	0	13	41	1.44
51645110--51645146	19	1.9	19	100	0	74	16	8	37	37	1.78
51645110--51645159	19	2.6	19	87	6	57	16	8	36	40	1.77
51649171--51649235	31	2.1	31	97	0	121	40	12	18	29	1.87
51649666--51650448	51	15.4	51	99	0	1521	33	15	21	29	1.94
51664135--51664179	21	2.1	21	84	8	56	60	0	2	37	1.09
51670779--51670809	14	2.2	14	94	0	53	51	0	0	48	1.00
51672756--51672793	19	2.0	20	84	5	51	36	5	2	55	1.37
51678289--51678619	164	2.0	165	99	0	655	40	6	12	40	1.69
51679434--51679460	2	13.5	2	100	0	54	51	0	0	48	1.00
51679433--51679670	118	2.0	119	99	0	469	39	8	5	46	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51682253--51682278	7	3.7	7	100	0	52	26	42	15	15	1.87
51692501--51692558	29	2.0	29	93	0	98	18	12	15	53	1.72
51694943--51694982	20	2.0	20	85	0	53	62	7	0	30	1.23
51694969--51695045	31	2.6	29	88	10	118	68	1	5	24	1.17
51696666--51696759	47	2.0	47	95	0	170	32	9	17	40	1.81
51699725--51699776	22	2.4	22	80	6	61	26	1	17	53	1.54
51701702--51701785	41	2.0	41	93	0	141	53	11	7	27	1.63
51705760--51705800	14	2.6	16	77	14	50	4	26	34	34	1.78
51708758--51708806	24	2.1	22	85	7	62	38	24	12	24	1.90
51712140--51712286	2	73.5	2	100	0	294	49	0	0	50	1.00
51718659--51718690	9	3.6	9	95	0	55	40	25	9	25	1.85
51723169--51723210	19	2.2	19	95	0	75	47	9	16	26	1.77
51729303--51729382	40	2.0	40	100	0	160	32	10	12	45	1.75
51729303--51729416	40	2.7	40	89	9	147	35	9	13	42	1.77
51730741--51730765	13	1.9	13	100	0	50	20	8	8	64	1.46
51732364--51732393	14	2.1	14	93	0	51	66	6	3	23	1.30
51732375--51732420	11	4.2	11	82	0	65	69	10	0	19	1.17
51732381--51732435	22	2.5	22	85	2	67	70	12	0	16	1.16
51736121--51736148	6	4.7	6	100	0	56	82	0	0	17	0.68
51751452--51751489	20	1.9	20	84	10	51	36	2	10	50	1.51
51756480--51756591	55	2.1	54	87	1	161	41	8	14	34	1.77
51756896--51757014	60	2.0	60	88	3	177	52	13	0	32	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51756916--51757037	60	2.0	60	84	6	158	57	10	0	31	1.33
51757110--51757160	26	1.9	27	84	11	70	0	33	0	66	0.92
51757446--51757489	22	1.9	24	81	9	56	63	4	0	31	1.14
51770670--51770706	1	37.0	1	100	0	74	0	0	0	100	0.00
51774205--51774245	21	2.0	21	95	0	73	4	56	12	26	1.56
51774205--51774251	21	2.2	21	88	0	67	6	53	10	29	1.60
51787963--51788045	20	4.4	20	65	20	61	38	9	4	46	1.58
51793089--51793147	31	1.9	31	82	0	73	32	8	10	49	1.67
51802155--51802233	21	3.8	21	75	11	65	44	0	5	50	1.24
51805435--51805484	19	2.6	19	74	0	55	50	4	8	38	1.51
51810270--51810311	17	2.4	17	92	4	66	33	0	7	59	1.25
51820638--51820676	15	2.7	14	76	7	51	58	0	0	41	0.98
51826950--51827111	81	2.0	80	80	10	179	45	13	8	33	1.73
51829059--51829451	196	2.0	197	99	0	779	33	14	20	30	1.93
51832274--51832439	89	1.9	88	82	13	209	22	10	14	51	1.73
51833526--51833580	1	55.0	1	88	0	65	90	0	5	3	0.53
51836456--51836499	10	4.7	10	81	18	51	61	0	0	38	0.96
51836457--51836497	9	4.6	9	82	17	50	60	0	0	39	0.96
51838044--51838085	23	1.9	21	85	9	57	33	4	0	61	1.17
51841741--51841784	18	2.4	18	84	3	61	43	0	4	52	1.22
51841860--51841932	28	2.6	27	80	12	76	63	0	2	34	1.09
51849603--51849628	4	6.5	4	100	0	52	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51852712--51852742	16	1.9	16	93	0	53	35	6	9	48	1.62
51859546--51859589	20	2.3	19	84	7	54	54	0	4	40	1.21
51864112--51864148	2	18.5	2	100	0	74	51	0	0	48	1.00
51864209--51864249	2	20.5	2	100	0	82	51	0	0	48	1.00
51864904--51865021	60	2.0	60	96	0	218	41	21	7	29	1.80
51865265--51865382	60	2.0	60	96	0	218	41	21	7	29	1.80
51872084--51872115	13	2.5	13	100	0	64	56	9	12	21	1.64
51883926--51883962	7	5.3	7	100	0	74	40	0	0	59	0.97
51888129--51888178	15	3.1	15	85	8	64	42	0	14	44	1.44
51888147--51888192	18	2.5	18	89	3	65	45	0	10	43	1.39
51888433--51888494	28	2.3	28	94	5	110	51	0	6	41	1.27
51889105--51889144	19	2.2	19	86	4	55	60	2	0	37	1.11
51889165--51889208	9	4.8	9	80	5	52	68	0	2	29	1.02
51889168--51889208	19	2.2	19	86	0	55	73	0	2	24	0.96
51895499--51895570	30	2.4	30	80	2	81	19	37	30	12	1.89
51895714--51895738	5	5.0	5	100	0	50	20	20	60	0	1.37
51896113--51896177	16	4.0	16	68	18	53	23	0	16	60	1.36
51898819--51898870	27	1.9	27	84	7	70	17	3	9	69	1.31
51900108--51900133	12	2.2	12	100	0	52	61	15	7	15	1.55
51900135--51900164	14	2.1	14	93	0	51	43	0	6	50	1.28
51900137--51900274	62	2.2	62	92	0	222	49	7	6	36	1.57
51902023--51902059	2	19.0	2	84	15	51	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51902206--51902338	25	5.6	25	83	7	127	21	23	16	38	1.93
51902216--51902332	22	5.0	22	80	7	108	20	24	17	37	1.93
51902241--51902332	44	2.0	46	85	6	125	19	26	17	36	1.94
51913917--51913977	28	2.2	28	87	0	95	40	9	16	32	1.81
51918108--51918267	48	3.3	48	83	0	194	47	22	21	8	1.78
51920906--51920945	21	1.9	21	85	10	55	37	2	2	57	1.26
51921423--51921494	29	2.5	28	81	4	81	36	0	1	62	1.04
51927642--51927676	13	2.7	13	81	0	52	34	34	20	11	1.88
51928949--51928992	23	1.9	23	90	0	70	38	20	22	18	1.93
51928950--51929001	23	2.3	23	82	0	59	40	21	21	17	1.91
51929158--51929280	64	1.9	64	88	3	185	35	24	19	20	1.95
51933488--51933562	23	3.3	23	92	0	123	34	26	21	17	1.95
51933775--51933813	18	2.2	17	86	13	53	46	20	0	33	1.51
51938208--51938233	5	5.2	5	100	0	52	19	0	0	80	0.71
51943326--51943362	9	4.1	9	92	0	65	29	10	13	45	1.77
51943338--51943520	96	1.9	97	96	1	341	39	14	14	31	1.86
51948493--51948585	27	3.4	28	91	7	147	37	13	0	48	1.43
51948591--51948632	6	6.8	6	82	12	50	80	16	2	0	0.81
51948591--51948631	13	3.2	13	80	12	50	82	14	2	0	0.76
51948651--51948918	27	9.9	27	99	0	527	22	29	29	17	1.97
51949395--51949455	27	2.3	27	100	0	122	18	27	31	22	1.97
51949516--51949613	28	3.5	28	84	13	130	48	0	15	35	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51949747--51950328	291	2.0	290	99	0	1146	28	17	20	33	1.95
51956074--51956100	2	13.5	2	100	0	54	51	0	0	48	1.00
51959734--51959817	26	3.2	26	83	8	100	63	14	1	21	1.37
51960080--51960119	14	2.9	14	82	14	55	37	5	12	45	1.64
51960088--51960154	34	1.9	35	96	3	127	32	7	11	47	1.68
51960241--51960279	20	2.0	20	94	0	69	48	2	0	48	1.15
51978185--51978241	27	2.1	27	96	0	105	14	26	40	19	1.89
51978195--51978257	27	2.3	27	86	5	83	19	25	39	15	1.91
51978617--51978735	22	4.8	27	78	16	132	52	11	1	34	1.48
51978569--51978735	49	3.4	49	85	4	216	52	13	1	32	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163