genome.fa.s4.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  93  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29902979--29903150	90	1.9	90	84	4	231	27	22	12	37	1.90
29909118--29909209	26	3.4	27	82	7	107	36	0	22	40	1.55
29909118--29909208	27	3.4	27	87	6	96	37	0	23	39	1.55
29909198--29909300	36	2.8	37	70	4	111	25	0	28	46	1.53
29909170--29909300	72	1.9	68	86	11	189	29	0	25	45	1.54
29910366--29910424	3	19.7	3	96	0	109	64	0	1	33	1.04
29911910--29912660	44	17.3	43	72	9	357	25	22	21	30	1.99
29911913--29912498	87	6.8	87	77	12	392	25	21	22	30	1.99
29912036--29912497	87	5.3	86	82	6	497	25	22	23	29	1.99
29912036--29912498	172	2.7	172	86	4	578	25	22	23	29	1.99
29912648--29913423	87	9.0	87	90	0	1153	24	25	22	28	1.99
29912841--29912977	43	3.2	43	65	20	104	24	24	25	26	2.00
29914666--29914718	22	2.4	22	90	9	81	13	13	0	73	1.10
29914667--29914714	7	6.7	7	95	4	87	12	12	0	75	1.06
29920454--29920509	3	18.7	3	100	0	112	66	0	0	33	0.92
29924948--29925416	126	3.7	126	82	3	586	38	14	19	27	1.90
29924948--29925416	252	1.9	251	86	2	681	38	14	19	27	1.90
29929621--29929816	105	1.9	104	83	4	259	30	16	26	26	1.97
29936933--29937655	361	2.0	362	99	0	1439	34	12	18	34	1.89
29939705--29939773	29	2.3	30	90	2	104	20	31	30	17	1.95
29941948--29942029	33	2.5	32	72	5	74	36	14	18	30	1.91
29942058--29942134	33	2.3	32	80	6	82	32	16	23	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29941953--29942182	105	2.3	99	84	7	275	31	15	24	28	1.96
29943530--29943554	10	2.5	10	100	0	50	76	0	0	24	0.80
29943908--29943951	19	2.3	19	92	0	70	20	38	25	15	1.92
29943916--29943953	19	2.0	19	100	0	76	15	42	26	15	1.87
29944738--29944797	31	2.0	31	86	3	86	51	1	1	45	1.21
29948730--29948961	91	2.5	91	87	2	315	37	23	9	29	1.86
29948958--29949015	18	3.2	17	80	9	53	37	1	0	60	1.07
29949048--29949212	91	1.8	90	84	7	228	27	9	24	38	1.87
29949047--29949237	91	2.1	87	79	12	199	30	9	24	35	1.87
29949235--29949259	3	8.3	3	100	0	50	36	0	0	64	0.94
29950946--29950979	15	2.3	15	89	0	50	52	0	14	32	1.42
29952296--29952373	11	6.9	11	83	11	86	21	33	0	44	1.53
29952386--29952441	25	2.3	24	84	3	76	28	3	8	58	1.45
29953675--29953716	23	1.9	23	90	9	70	30	2	2	64	1.19
29953676--29953725	23	2.2	22	82	10	57	28	4	4	64	1.30
29953751--29953781	11	2.8	11	90	0	53	67	0	0	32	0.91
29953751--29953785	11	3.1	11	91	4	52	65	0	0	34	0.93
29959582--29959693	51	2.2	52	88	3	165	13	17	38	30	1.88
29961130--29962059	464	2.0	464	99	0	1833	32	10	16	40	1.82
29965936--29965991	17	3.3	17	78	9	60	19	1	10	67	1.29
29970735--29971112	129	2.9	129	85	4	469	26	21	21	30	1.98
29970909--29971065	84	1.9	85	85	6	221	25	24	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29970736--29971114	44	8.8	44	71	12	230	26	21	21	30	1.98
29971083--29971189	45	2.4	44	81	7	119	24	30	17	27	1.97
29971207--29971500	132	2.2	132	90	0	453	28	22	19	29	1.98
29971517--29972077	89	6.3	89	83	3	736	26	24	17	32	1.97
29972014--29972136	59	2.1	59	96	3	230	21	22	18	36	1.95
29972073--29972567	89	5.6	89	89	1	742	26	22	17	32	1.96
29971836--29972314	237	2.0	237	92	1	791	26	22	17	33	1.96
29971569--29972567	504	2.0	504	88	2	1497	26	23	17	32	1.96
29972080--29972567	267	1.8	267	95	0	879	26	22	17	32	1.96
29973839--29973887	21	2.3	21	89	6	73	14	16	0	69	1.19
29973839--29973887	7	7.0	7	82	17	66	14	16	0	69	1.19
29976804--29976829	13	2.0	13	100	0	52	46	15	7	30	1.74
29977493--29978463	485	2.0	486	99	0	1935	44	12	12	30	1.79
29978445--29978504	29	2.0	30	84	9	79	55	6	5	33	1.48
29980057--29980253	96	2.0	97	99	0	387	50	10	2	37	1.48
29980334--29980411	23	3.4	23	72	8	70	52	28	0	19	1.46
29980742--29980772	16	1.9	16	93	0	53	38	19	0	41	1.51
29988151--29988192	20	2.1	20	100	0	84	33	7	33	26	1.83
29989753--29989888	25	5.4	25	63	16	75	24	14	27	33	1.94
29989753--29989917	50	3.3	50	87	0	249	23	15	27	33	1.94
29993518--29993615	42	2.3	42	82	3	126	19	27	23	29	1.98
29997188--29997222	18	1.9	18	94	0	61	20	34	14	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30006348--30006623	27	10.2	27	90	2	421	42	19	17	20	1.89
30006971--30007052	28	3.0	28	83	1	94	23	23	21	31	1.98
30040739--30040807	19	3.5	20	76	5	70	36	23	20	20	1.95
30040761--30040805	20	2.3	19	88	3	63	37	24	20	17	1.93
30042642--30043213	297	1.9	291	84	3	761	36	11	15	36	1.83
30045925--30045985	24	2.5	24	86	0	77	39	19	21	19	1.93
30048537--30048611	26	2.9	26	81	0	87	40	22	21	16	1.91
30048775--30049256	27	17.9	27	82	2	540	18	19	19	42	1.89
30056518--30056586	23	2.8	26	69	13	72	40	21	24	13	1.89
30061559--30061643	37	2.3	38	87	2	127	37	22	9	30	1.86
30065319--30065377	18	3.2	18	77	13	57	37	1	8	52	1.42
30070439--30070503	30	2.2	30	97	0	121	30	18	12	38	1.88
30070629--30070663	15	2.4	15	90	4	54	20	0	5	74	1.02
30070620--30070667	23	2.1	23	84	7	62	18	2	6	72	1.15
30071443--30071476	17	1.9	18	94	5	61	35	0	0	64	0.94
30071430--30071533	32	3.3	31	78	12	86	40	1	0	56	1.17
30071461--30071489	14	2.1	14	93	6	51	31	0	0	68	0.89
30075709--30075745	18	2.0	19	89	5	58	64	0	0	35	0.94
30075813--30075870	23	2.4	23	86	11	73	72	1	5	20	1.13
30076791--30076833	14	2.9	15	83	13	54	51	0	2	46	1.13
30078674--30078702	10	2.9	10	100	0	58	82	0	17	0	0.66
30078674--30078711	20	1.9	20	84	10	51	81	2	13	2	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30078807--30078838	15	2.2	14	94	5	55	75	0	3	21	0.95
30089353--30089464	53	2.1	54	83	5	138	24	26	0	48	1.57
30090647--30090680	12	2.8	12	95	0	59	50	20	17	11	1.77
30095234--30095405	73	2.4	72	92	1	272	26	23	25	24	2.00
30095305--30095520	118	1.9	115	85	5	301	29	19	25	25	1.99
30095234--30095645	191	2.2	192	88	3	604	29	21	24	24	1.99
30095419--30095594	73	2.3	74	80	4	201	31	19	24	24	1.98
30095506--30095803	112	2.6	113	90	2	463	25	21	26	26	2.00
30095812--30095890	41	1.9	41	89	5	124	16	16	36	30	1.91
30096141--30096186	14	3.2	14	90	3	65	26	0	36	36	1.57
30096201--30096231	15	2.1	15	100	0	62	22	0	45	32	1.53
30096430--30096470	15	2.8	15	92	3	66	31	0	29	39	1.57
30096038--30096640	290	2.0	285	86	6	773	29	2	26	41	1.69
30096876--30096974	47	2.0	49	86	9	141	48	7	2	42	1.42
30097373--30097679	157	2.0	157	100	0	614	56	5	6	31	1.48
30098296--30098321	11	2.4	11	100	0	52	38	7	0	53	1.30
30098275--30098397	38	3.4	37	71	22	118	34	3	0	62	1.11
30098318--30098368	9	5.4	9	73	17	50	27	1	0	70	0.98
30098307--30098368	30	2.0	30	87	9	90	30	3	0	66	1.08
30098683--30098721	16	2.4	16	91	0	60	20	46	12	20	1.83
30099428--30099839	204	2.0	204	99	0	808	17	13	24	45	1.84
30099887--30099916	14	2.1	14	93	0	51	23	13	10	53	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30100132--30100174	22	2.0	22	95	0	77	27	13	18	39	1.89
30101304--30101337	12	2.8	12	86	0	50	47	14	8	29	1.75
30101328--30101532	9	23.7	9	68	19	98	46	20	2	30	1.64
30101337--30101374	20	1.9	19	89	5	58	57	13	2	26	1.49
30101357--30101532	25	7.2	25	67	22	90	45	21	2	30	1.64
30101357--30101504	34	4.6	34	72	14	141	45	22	2	29	1.63
30101350--30101478	61	2.1	61	90	7	199	47	22	2	27	1.64
30101367--30101496	61	2.1	60	83	8	165	46	23	1	29	1.61
30103636--30103806	66	2.6	65	83	4	200	40	18	26	13	1.88
30103797--30103889	21	4.4	21	79	0	96	35	15	43	6	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163