genome.fa.s4.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  137  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44637453--44637576	51	2.4	51	94	0	212	28	25	0	46	1.53
44638973--44638997	7	3.6	7	100	0	50	28	0	12	60	1.32
44640106--44640192	44	2.0	45	90	2	140	37	1	12	48	1.49
44640198--44640581	23	16.3	23	83	9	470	47	21	1	29	1.59
44640218--44640282	30	2.2	30	91	0	103	53	26	0	20	1.45
44640475--44640516	21	2.0	20	90	4	66	47	26	0	26	1.52
44641947--44641987	20	2.0	20	100	0	82	39	17	9	34	1.82
44652639--44652695	29	2.0	29	96	0	105	19	14	19	47	1.82
44653015--44653054	14	2.9	13	85	10	53	65	0	35	0	0.93
44653111--44653199	45	2.0	45	95	0	160	26	12	19	41	1.87
44654239--44654273	18	1.9	18	100	0	70	11	17	8	62	1.52
44654515--44654619	49	2.1	50	89	1	158	44	17	11	26	1.82
44655017--44655051	18	1.9	18	94	0	61	25	11	22	40	1.88
44668689--44668743	21	2.4	23	85	8	69	58	10	1	29	1.43
44669047--44669098	8	6.6	8	78	12	63	57	0	5	36	1.23
44669118--44669151	16	2.1	16	94	0	59	50	5	8	35	1.58
44669130--44669173	22	2.0	23	81	4	54	61	2	2	34	1.21
44670148--44670186	20	2.0	20	85	10	53	76	5	7	10	1.13
44675736--44675807	31	2.4	30	80	15	78	38	5	11	44	1.63
44675756--44675819	31	2.1	31	82	5	76	39	6	10	43	1.65
44677976--44678024	23	2.2	22	79	13	55	46	0	2	51	1.12
44679713--44679748	14	2.6	14	90	0	54	30	22	5	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44686885--44686915	14	2.2	14	100	0	62	41	12	12	32	1.81
44687484--44687548	21	3.2	20	76	12	62	64	3	4	27	1.28
44689917--44689954	19	2.1	17	90	9	58	65	5	5	23	1.34
44689920--44689962	19	2.2	19	83	4	50	69	4	6	18	1.29
44697182--44697279	33	3.0	32	74	5	90	42	9	1	46	1.42
44697239--44697317	41	1.9	41	84	0	104	36	8	1	53	1.40
44698245--44698994	375	2.0	375	100	0	1500	31	16	18	33	1.93
44699814--44700021	112	1.8	113	97	2	400	54	4	7	33	1.50
44706891--44707144	44	5.7	44	77	7	190	32	19	20	27	1.97
44707068--44707404	44	7.5	44	70	12	123	32	20	19	28	1.97
44706971--44707467	226	2.2	226	85	1	672	32	20	19	27	1.97
44708023--44708050	3	9.3	3	100	0	56	32	0	0	67	0.91
44710538--44710587	3	16.7	3	76	15	50	62	2	2	34	1.18
44720348--44720419	28	2.6	28	84	8	85	44	0	4	51	1.20
44720585--44720636	15	3.6	15	80	12	56	44	0	1	53	1.11
44720762--44720851	45	2.0	44	87	6	128	33	27	5	33	1.80
44732423--44732459	16	2.2	17	86	13	51	67	2	21	8	1.29
44737863--44738183	162	2.0	162	91	2	520	35	19	21	23	1.96
44751825--44751862	14	2.4	17	87	12	55	52	0	0	47	1.00
44751842--44751885	12	3.7	11	80	14	52	45	2	0	52	1.13
44751837--44751899	24	2.7	23	78	9	65	50	1	0	47	1.10
44751854--44751902	20	2.5	20	76	6	55	53	2	0	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44753853--44753900	3	16.0	3	82	8	62	31	4	2	62	1.26
44753854--44753911	12	4.8	12	84	0	62	31	5	3	60	1.35
44757069--44757109	22	1.9	21	85	5	55	48	0	2	48	1.14
44764501--44764653	76	2.0	76	98	0	297	50	6	7	34	1.57
44773132--44773188	23	2.3	25	80	16	66	42	1	8	47	1.45
44779586--44779627	13	3.2	13	80	16	50	21	0	4	73	1.01
44780220--44780290	35	2.0	35	83	8	90	40	0	2	56	1.14
44782232--44782402	25	6.8	25	91	0	252	20	23	19	36	1.95
44783213--44783244	17	2.0	17	88	11	50	62	31	6	0	1.20
44789162--44789206	18	2.4	18	81	7	54	71	2	2	24	1.09
44789182--44789228	24	2.0	24	86	0	67	78	4	0	17	0.90
44789199--44789232	17	2.0	17	88	0	50	79	8	0	11	0.94
44789321--44789351	15	2.1	15	93	0	53	54	6	0	38	1.26
44796398--44796474	40	1.9	40	89	0	118	23	29	31	15	1.95
44817460--44817518	23	2.6	23	83	0	73	32	20	27	20	1.97
44817460--44817527	23	3.0	23	78	4	57	33	20	25	20	1.97
44841000--44841032	16	2.0	17	88	5	50	51	0	0	48	1.00
44844977--44845004	12	2.3	12	100	0	56	7	14	28	50	1.69
44845026--44845065	19	2.0	20	85	4	55	37	7	0	55	1.29
44846424--44846473	2	25.0	2	95	0	91	50	2	0	48	1.12
44858161--44858200	21	2.0	20	85	5	53	22	0	25	52	1.47
44869659--44869685	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44876120--44876272	75	2.0	76	87	6	222	47	8	7	37	1.62
44879758--44879929	73	2.4	72	86	2	238	27	20	24	27	1.99
44879829--44880391	114	4.9	114	89	0	820	26	19	25	28	1.98
44880413--44880457	15	3.1	15	87	6	65	22	0	42	35	1.54
44880416--44880464	14	3.4	14	91	2	71	24	0	40	34	1.55
44880431--44880513	7	11.6	7	76	10	51	22	0	43	33	1.54
44880463--44880513	15	3.5	15	84	12	70	19	0	49	31	1.49
44880714--44880777	14	4.5	15	75	14	64	29	0	29	40	1.57
44880772--44880842	15	4.9	14	77	17	65	23	1	40	33	1.64
44881648--44881678	16	2.0	16	93	6	55	58	6	0	35	1.24
44881837--44882065	123	1.9	121	94	1	404	39	15	13	31	1.86
44882168--44882208	21	1.9	21	85	14	57	29	41	0	29	1.56
44883542--44883571	15	2.0	15	93	0	51	46	0	10	43	1.37
44884165--44884203	21	2.0	21	85	10	55	28	5	5	61	1.39
44885818--44886106	43	6.7	42	85	2	337	24	20	28	27	1.99
44886172--44886213	22	1.9	22	85	0	57	40	26	21	11	1.88
44887926--44887984	30	2.0	29	87	6	84	45	0	30	23	1.53
44888028--44888064	9	4.1	9	92	0	65	29	10	13	45	1.77
44895774--44896163	198	2.0	197	80	5	448	36	16	15	31	1.90
44897910--44897942	18	1.9	17	88	11	50	15	3	12	69	1.30
44916303--44916349	18	2.6	18	96	0	85	40	12	12	34	1.82
44917889--44918006	60	2.0	59	88	5	175	61	14	6	16	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44922367--44922515	63	2.4	63	90	0	253	27	20	34	18	1.95
44930341--44930505	80	2.0	81	95	1	296	57	2	17	22	1.51
44940569--44940607	20	1.9	20	84	5	51	41	7	5	46	1.55
44942350--44942379	13	2.3	13	94	0	51	0	40	6	53	1.27
44942657--44942737	24	3.2	24	73	10	72	13	40	18	27	1.88
44946891--44946934	23	1.9	23	85	0	61	36	0	2	61	1.09
44950231--44950260	13	2.3	13	94	0	51	0	40	6	53	1.27
44950538--44950618	24	3.2	24	73	10	72	13	40	18	27	1.88
44954772--44954815	23	1.9	23	85	0	61	36	0	2	61	1.09
44955753--44955808	26	2.2	26	100	0	112	42	23	3	30	1.71
44956825--44957060	119	2.0	120	99	0	465	27	23	18	30	1.98
44957759--44957851	46	2.0	47	97	2	179	36	17	6	39	1.75
44969822--44969877	26	2.2	26	100	0	112	42	23	3	30	1.71
44970810--44971209	206	1.9	205	94	1	712	30	25	18	26	1.98
44981023--44981093	15	4.4	15	75	18	63	50	0	1	47	1.09
44981583--44981645	26	2.4	26	82	12	76	34	4	4	55	1.42
44983097--44983138	14	3.1	14	90	10	61	0	21	0	78	0.75
44983098--44983143	18	2.6	18	93	6	76	2	21	0	76	0.90
44984115--44984153	20	2.0	20	89	0	60	56	0	0	43	0.99
44986754--44986793	17	2.4	17	86	0	53	55	2	2	40	1.27
44986850--44987117	17	15.7	17	97	0	482	46	0	0	52	1.06
44991585--44991628	15	2.9	15	93	0	70	43	4	4	47	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44994105--44994157	13	4.1	13	80	0	70	30	7	26	35	1.84
45001899--45001954	17	3.4	16	76	11	51	35	0	5	58	1.21
45001901--45001953	22	2.4	22	78	12	54	35	0	5	58	1.22
45003244--45003304	22	2.7	23	77	7	72	42	14	24	18	1.88
45007413--45007456	24	1.9	24	90	9	74	36	0	2	61	1.09
45007575--45007607	16	2.1	16	94	0	57	45	6	3	45	1.43
45007581--45007642	23	2.7	23	82	2	72	48	1	1	48	1.21
45014383--45014433	2	25.5	2	100	0	102	0	49	0	50	1.00
45021127--45021190	3	21.3	3	100	0	128	34	0	0	65	0.93
45030746--45030800	28	1.9	29	88	3	85	20	43	0	36	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163