genome.fa.s4.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  29  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9213044--9213091	20	2.5	19	77	12	53	47	8	2	41	1.45
9213073--9213361	146	2.0	147	85	5	399	45	8	4	41	1.55
9213579--9214226	326	2.0	325	96	0	1197	40	12	14	33	1.83
9220694--9220736	22	2.0	22	90	0	68	37	25	16	20	1.93
9221240--9221277	12	3.1	12	79	20	51	44	0	0	55	0.99
9221316--9221363	20	2.5	19	80	6	53	45	6	2	45	1.40
9224710--9224785	35	2.1	37	83	11	95	59	1	0	39	1.06
9225722--9225833	40	2.8	40	86	0	152	37	16	28	17	1.91
9226995--9227052	21	2.8	21	76	5	55	50	15	3	31	1.61
9228928--9229043	41	2.8	40	81	6	115	18	18	32	31	1.94
9229208--9229251	14	3.1	14	81	12	54	27	2	25	45	1.65
9229245--9229398	7	21.7	7	72	7	69	23	0	35	40	1.60
9229246--9229398	21	7.2	21	71	9	87	23	0	34	41	1.60
9229245--9229407	64	2.5	64	80	3	177	22	0	34	42	1.59
9229245--9229449	7	28.9	7	68	10	51	22	0	35	40	1.61
9233492--9233732	43	5.6	42	80	3	216	22	18	28	31	1.97
9233507--9233732	86	2.6	86	80	5	242	21	19	29	29	1.98
9234510--9234552	22	2.0	22	90	0	68	9	13	27	48	1.73
9234629--9234974	42	8.2	42	88	3	491	32	21	20	25	1.97
9234629--9234974	83	4.1	85	88	3	495	32	21	20	25	1.97
9235262--9235488	114	2.0	115	98	0	438	13	23	18	44	1.86
9235503--9235571	21	3.3	21	83	0	93	4	43	15	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9235479--9235518	12	3.3	12	89	0	62	2	37	17	42	1.63
9240178--9240206	11	2.7	11	94	5	51	68	0	3	27	1.05
9241118--9241497	147	2.6	147	96	0	697	38	24	11	26	1.89
9241192--9241424	74	3.2	73	66	13	215	39	23	11	25	1.88
9251471--9251557	43	2.0	44	97	2	167	24	34	20	20	1.97
9252097--9252191	3	31.7	3	85	0	91	33	7	1	57	1.33
9257545--9257590	17	2.8	18	84	15	64	28	41	30	0	1.56
9259148--9259185	2	19.5	2	94	5	69	52	0	0	47	1.00
9275848--9275909	27	2.3	26	81	10	72	35	0	4	59	1.19
9276672--9276718	21	2.3	22	82	13	57	48	4	0	46	1.21
9276912--9276963	14	4.0	13	76	13	54	55	1	1	40	1.22
9276902--9276963	28	2.2	27	85	5	79	56	1	3	38	1.25
9277908--9277941	17	2.0	17	88	11	52	47	0	47	5	1.26
9278777--9278811	16	2.1	17	89	10	54	51	0	0	48	1.00
9279619--9279766	54	2.6	54	82	10	163	25	14	13	47	1.80
9279980--9280017	18	2.1	19	90	5	60	10	7	7	73	1.24
9279985--9280029	22	2.1	21	84	12	56	8	4	8	77	1.10
9283868--9284031	71	2.4	70	88	5	235	42	20	18	18	1.89
9285781--9285830	25	2.0	25	88	0	73	44	2	0	54	1.11
9285786--9285838	12	4.3	12	71	4	52	50	1	0	47	1.12
9286754--9286783	16	1.9	15	93	6	51	56	0	3	40	1.16
9288639--9288669	16	1.9	16	100	0	62	51	16	12	19	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9289293--9289359	29	2.3	28	75	10	64	62	2	5	28	1.33
9289326--9289366	20	2.0	20	86	9	57	60	4	2	31	1.30
9290649--9290673	3	8.3	3	100	0	50	68	0	32	0	0.90
9290661--9290777	57	2.0	58	88	1	173	58	10	10	20	1.59
9293275--9293401	23	5.6	23	83	5	152	14	3	39	43	1.61
9293275--9293401	68	1.9	68	83	9	170	14	3	39	43	1.61
9293275--9293396	45	2.7	46	83	5	151	14	3	38	43	1.62
9296040--9296069	16	1.9	15	93	6	51	40	13	10	36	1.78
9298642--9298677	15	2.5	14	86	8	54	44	8	0	47	1.33
9300560--9300642	4	19.8	4	77	20	73	72	0	2	25	0.97
9300560--9300641	31	2.9	27	75	12	76	71	0	2	25	0.98
9300560--9300649	34	2.6	33	84	10	110	73	0	2	24	0.95
9300572--9300649	5	15.4	5	78	17	56	73	0	2	24	0.96
9300560--9300648	29	3.1	28	81	13	110	73	0	2	24	0.95
9304581--9304616	15	2.5	14	86	8	54	44	8	0	47	1.33
9305347--9305384	3	12.7	3	100	0	76	65	0	0	34	0.93
9306821--9306931	47	2.3	47	81	9	136	69	2	5	22	1.22
9316455--9316653	88	2.3	88	80	9	219	27	23	20	29	1.98
9316541--9316928	44	8.6	44	72	11	268	28	20	19	31	1.97
9316546--9316882	183	1.8	182	82	4	437	29	19	19	31	1.97
9316542--9317081	227	2.4	227	85	4	732	28	21	19	31	1.97
9317109--9317364	45	5.8	45	72	7	150	27	22	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9317452--9317495	21	2.1	21	86	0	61	20	29	9	40	1.83
9317529--9317889	132	2.7	132	87	2	512	25	24	19	30	1.98
9317529--9317937	132	3.1	132	84	4	407	27	24	18	29	1.98
9317865--9318541	89	7.6	89	85	2	808	26	23	21	27	1.99
9317854--9318537	267	2.6	267	86	2	901	26	23	21	27	1.99
9326491--9326604	40	3.2	38	63	22	100	53	7	4	34	1.50
9326494--9326635	70	2.0	71	98	1	277	50	8	4	36	1.52
9328744--9328819	36	2.1	36	80	11	84	38	9	1	51	1.42
9328924--9328967	23	2.0	22	90	4	70	34	6	2	56	1.38
9336043--9336085	23	1.9	22	90	4	68	34	6	2	55	1.39
9339304--9339408	53	2.0	54	96	1	194	37	14	9	39	1.78
9339911--9339959	21	2.3	21	80	10	64	69	0	8	22	1.14
9339918--9339958	21	1.9	22	90	5	66	73	0	7	19	1.07
9341477--9341663	86	2.2	86	92	0	311	27	20	21	31	1.98
9341501--9341818	44	7.3	44	69	12	158	29	20	20	29	1.98
9341812--9342499	132	5.2	132	92	1	1101	29	22	18	29	1.97
9342052--9342239	44	4.3	44	64	20	113	28	23	17	30	1.97
9342510--9342652	44	3.3	44	68	8	112	23	26	26	23	2.00
9342497--9342710	87	2.4	87	82	4	279	21	24	26	27	1.99
9348774--9348814	21	1.9	21	85	5	55	70	0	9	19	1.14
9350076--9350351	137	2.0	138	97	0	527	38	6	19	35	1.77
9352100--9352132	2	16.5	2	93	0	57	45	0	3	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9355391--9355439	13	3.8	13	75	0	53	34	16	8	40	1.78
9355389--9355439	26	2.0	26	84	0	66	35	15	7	41	1.76
9361025--9361056	15	2.1	15	94	0	55	68	3	6	21	1.26
9365008--9365052	19	2.3	19	85	11	56	35	4	4	55	1.40
9373108--9373146	18	2.2	18	85	0	51	58	10	5	25	1.51
9373181--9373258	37	2.1	37	83	4	95	29	29	0	41	1.57
9374940--9375001	21	3.0	21	79	6	65	12	32	32	22	1.92
9375003--9375035	16	2.1	16	100	0	66	24	45	24	6	1.75
9376232--9376301	34	2.1	34	94	5	124	28	5	25	40	1.78
9378404--9378718	27	11.7	27	83	4	264	40	22	17	19	1.91
9378416--9378718	54	5.6	53	80	5	293	40	23	17	18	1.91
9378404--9378720	81	3.9	81	79	4	309	41	22	17	19	1.91
9378870--9378976	26	4.1	26	86	4	153	17	16	26	39	1.91
9382243--9382415	64	2.7	64	88	0	238	36	21	19	23	1.95
9386382--9386407	10	2.6	10	100	0	52	26	0	30	42	1.56
9387747--9387805	31	1.9	31	89	0	91	30	3	20	45	1.67
9388919--9388958	20	2.0	20	90	0	62	27	10	12	50	1.72
9388904--9388970	34	1.9	35	90	3	109	31	8	13	46	1.74
9388898--9388974	14	5.0	15	71	20	52	33	9	14	42	1.77
9394551--9394575	6	4.2	6	100	0	50	0	16	0	84	0.63
9394740--9394769	9	3.3	9	90	0	51	46	13	10	30	1.75
9394854--9394919	19	3.4	19	79	8	71	57	6	0	36	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9395247--9395286	21	1.9	21	89	0	62	57	12	10	20	1.63
9397067--9397103	9	4.1	9	85	0	56	29	8	13	48	1.71
9402724--9402799	22	3.4	23	82	14	88	25	30	2	42	1.69
9402723--9402797	33	2.2	33	86	9	107	24	30	2	42	1.68
9402723--9402799	11	6.9	11	74	21	72	24	29	2	42	1.68
9402759--9402858	51	2.0	51	84	4	130	28	26	2	44	1.65
9404546--9404585	18	2.2	18	90	0	62	20	30	5	45	1.72
9406710--9407245	126	4.3	125	86	3	754	29	23	17	29	1.97
9408393--9408447	24	2.2	24	80	3	56	43	3	38	14	1.63
9409601--9409631	15	2.1	15	93	0	53	22	16	12	48	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163