genome.fa.s4.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  36  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11783055--11783168	44	2.6	45	81	4	133	28	26	18	27	1.98
11795013--11795043	8	3.8	8	91	8	53	74	0	3	22	0.96
11795616--11795665	22	2.3	22	100	0	100	16	38	32	14	1.88
11796483--11796541	18	3.0	20	80	7	59	64	1	0	33	1.04
11796478--11796532	21	2.5	23	74	17	62	61	3	0	34	1.13
11807599--11807628	15	2.0	15	93	0	51	56	13	13	16	1.67
11811262--11811291	15	2.0	15	93	0	51	56	13	13	16	1.67
11815521--11815562	18	2.3	18	91	0	66	21	28	7	42	1.79
11815958--11816072	62	1.9	60	81	3	140	37	4	8	49	1.54
11819078--11819722	126	5.1	126	87	1	875	27	16	17	38	1.91
11819822--11819937	34	3.4	33	85	4	160	42	15	1	40	1.57
11819808--11819937	68	1.9	68	85	3	181	43	13	1	40	1.54
11821351--11821409	30	1.9	31	89	3	93	33	3	6	55	1.43
11821736--11821793	29	2.0	30	89	3	91	34	3	8	53	1.49
11822023--11822339	165	2.0	156	86	5	411	43	8	12	36	1.72
11831250--11831312	21	3.0	20	76	15	65	42	25	20	11	1.85
11831316--11831362	23	2.0	23	87	0	67	40	23	17	19	1.91
11834901--11834945	22	2.0	22	100	0	90	46	17	8	26	1.78
11835574--11835627	27	2.1	26	83	13	67	55	7	3	33	1.45
11838535--11838559	8	3.1	8	100	0	50	12	12	0	76	1.04
11843357--11844318	129	7.5	127	77	8	442	27	18	25	28	1.98
11843442--11844397	173	5.5	172	89	2	874	28	18	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11843354--11844066	302	2.4	302	94	0	1243	27	18	25	28	1.98
11843354--11844149	302	2.6	300	91	1	1220	27	18	25	28	1.98
11843357--11844353	44	23.1	45	68	13	373	28	18	25	28	1.98
11843700--11844416	173	4.2	173	91	1	1097	27	18	25	28	1.98
11854942--11855267	43	7.6	42	87	2	384	26	15	24	33	1.95
11854942--11855267	85	3.8	85	84	2	395	26	15	24	33	1.95
11854942--11855267	127	2.5	128	86	2	431	26	15	24	33	1.95
11861312--11861433	42	2.8	43	81	10	142	22	15	28	32	1.95
11869295--11869459	43	3.9	42	75	9	145	25	16	26	32	1.96
11877620--11877649	15	1.9	16	93	6	53	36	0	20	43	1.52
11877898--11877958	25	2.4	25	91	0	86	26	22	19	31	1.98
11905149--11905234	42	2.0	42	84	4	111	25	26	32	15	1.95
11908217--11908394	68	2.6	67	82	1	221	25	23	17	33	1.97
11908226--11908452	67	3.4	68	78	1	251	25	24	17	32	1.97
11909812--11909856	22	2.0	24	86	8	67	55	11	0	33	1.35
11911349--11911409	26	2.5	24	76	10	61	47	14	13	24	1.80
11914608--11914680	7	10.4	7	86	0	74	54	5	16	23	1.62
11914615--11914687	14	5.2	14	88	0	92	57	6	13	21	1.60
11914622--11914687	21	3.1	21	86	0	78	59	7	12	21	1.57
11914633--11914690	7	8.3	7	84	0	80	60	10	12	17	1.58
11921478--11921519	19	2.2	20	86	4	59	28	0	4	66	1.12
11923532--11923599	34	2.0	34	97	0	127	35	13	8	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11925428--11925503	23	3.3	23	90	0	125	28	26	22	22	1.99
11935654--11935694	21	2.0	21	90	9	66	29	24	0	46	1.53
11940194--11940264	35	2.0	35	91	0	115	30	23	9	35	1.88
11943561--11943993	133	3.3	132	80	3	458	36	13	18	30	1.90
11943757--11944235	231	2.0	237	82	6	578	37	13	18	30	1.90
11943886--11944094	98	2.1	99	81	0	249	37	13	15	32	1.87
11944163--11944370	63	3.2	63	70	18	190	37	14	18	29	1.91
11944116--11944385	133	2.0	133	90	0	423	38	14	19	28	1.90
11953856--11953951	19	4.7	21	79	10	74	40	15	6	37	1.73
11953856--11953913	22	2.6	22	81	7	64	41	17	5	36	1.72
11953892--11953983	19	4.8	19	83	0	130	38	13	7	41	1.72
11953892--11953983	38	2.4	38	96	0	166	38	13	7	41	1.72
11964032--11964305	39	7.1	39	83	4	358	29	14	18	37	1.91
11964032--11964305	77	3.5	77	89	0	413	29	14	18	37	1.91
11964032--11964305	116	2.4	116	82	5	356	29	14	18	37	1.91
11967283--11967336	22	2.4	23	84	9	76	18	25	18	37	1.94
11969527--11969577	23	2.2	23	92	0	84	41	21	9	27	1.84
11972620--11973000	50	7.6	50	86	1	496	27	20	30	21	1.98
11974545--11974595	23	2.2	23	89	0	75	43	13	9	33	1.77
11977308--11977364	22	2.6	22	88	0	87	28	38	17	15	1.91
11978642--11978736	44	2.2	42	88	3	136	26	15	28	29	1.96
11984730--11984852	43	2.9	43	79	9	135	19	17	29	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11987594--11987633	21	2.0	20	90	5	62	40	5	5	50	1.46
11989190--11989241	24	2.2	24	89	0	77	55	11	1	30	1.46
11991119--11991170	24	2.2	24	89	0	77	51	9	3	34	1.53
11993593--11993651	26	2.2	27	82	11	68	37	5	0	57	1.21
11993685--11993718	17	2.0	17	88	0	50	29	2	2	64	1.22
11994871--11995032	85	1.9	84	82	3	200	39	18	10	31	1.85
11995349--11995453	29	3.6	27	75	15	77	27	6	0	64	1.24
11995448--11995490	13	3.2	13	80	6	50	32	0	2	65	1.06
11995561--11995777	89	2.4	90	78	6	253	29	9	21	38	1.86
12000564--12000603	21	1.9	21	84	0	53	40	7	2	50	1.44
12000826--12000988	58	2.8	59	81	4	186	39	17	4	38	1.72
12002895--12002984	32	2.8	32	93	0	153	55	16	3	24	1.56
12002959--12003011	27	2.0	27	85	7	72	52	16	3	26	1.61
12005158--12005240	40	2.1	40	93	4	141	15	20	8	55	1.66
12005322--12005927	205	3.0	201	84	6	735	41	16	12	29	1.85
12010254--12010284	6	5.0	6	96	4	53	19	0	0	80	0.71
12013753--12013792	18	2.3	18	82	4	55	62	2	5	30	1.29
12014222--12014292	35	2.0	35	94	0	124	11	32	33	22	1.90
12014388--12014428	20	2.0	20	90	0	64	51	7	4	36	1.51
12014413--12014641	51	4.5	53	69	13	167	44	9	2	43	1.50
12014354--12014631	154	1.8	153	86	3	407	44	9	3	42	1.55
12018401--12018462	30	2.1	30	93	0	106	29	16	8	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12024082--12024121	18	2.3	18	82	4	55	62	2	5	30	1.29
12024682--12024722	20	2.0	20	90	0	64	51	7	4	36	1.51
12024707--12024935	51	4.5	53	69	13	167	44	9	2	43	1.50
12024648--12024925	154	1.8	153	86	3	407	44	9	3	42	1.55
12025091--12025168	39	2.0	40	94	2	140	61	7	14	16	1.55
12027950--12028017	29	2.3	29	77	7	75	27	4	1	66	1.20
12028176--12028224	22	2.3	21	86	10	64	28	4	4	63	1.31
12028148--12028326	26	7.2	26	76	12	137	27	6	4	61	1.41
12028148--12028326	50	3.6	50	76	10	163	27	6	4	61	1.41
12034593--12034618	2	13.0	2	100	0	52	50	0	0	50	1.00
12041334--12041368	18	2.0	17	88	5	52	45	0	0	54	0.99
12041524--12041621	44	2.2	45	85	8	130	35	28	5	30	1.79
12041601--12041637	16	2.3	16	95	0	65	24	35	5	35	1.78
12043723--12044198	243	2.0	244	92	0	801	29	16	19	34	1.94
12046260--12046321	23	2.7	23	87	2	90	40	22	17	19	1.91
12048140--12048180	18	2.2	19	91	4	66	70	0	7	21	1.11
12048863--12048910	22	2.2	22	85	7	62	27	8	0	64	1.22
12048927--12048974	25	2.0	25	87	4	71	29	4	6	60	1.40
12052630--12052701	19	3.6	20	77	9	58	58	1	1	38	1.15
12052630--12052670	20	2.1	19	86	9	55	56	0	2	41	1.13
12060189--12060324	67	2.0	67	91	0	218	34	25	19	19	1.96
12061172--12061201	16	1.9	16	93	6	53	50	20	0	30	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12066515--12066545	16	1.9	16	100	0	62	64	12	0	22	1.27
12077172--12077205	12	2.8	12	86	0	50	23	47	17	11	1.81
12083321--12083385	24	2.7	24	82	2	85	18	26	18	36	1.94
12084590--12084761	73	2.4	73	96	0	317	18	26	27	26	1.98
12091199--12091238	20	2.0	20	90	0	62	27	0	2	70	1.01
12093746--12093987	127	1.9	129	82	6	305	38	15	11	35	1.83
12100020--12100071	24	2.2	24	89	0	77	51	7	7	32	1.59
12102005--12102105	50	2.0	51	88	1	150	31	20	28	18	1.97
12108781--12108838	19	3.2	20	72	16	54	65	0	3	31	1.09
12109237--12109280	20	2.2	20	91	0	70	50	9	9	31	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163