genome.fa.s4.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  144  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47328692--47328724	8	4.0	8	96	4	57	24	0	0	75	0.80
47331839--47331878	16	2.5	16	87	0	62	35	7	30	27	1.84
47333098--47333203	52	2.0	53	94	1	187	25	5	16	51	1.66
47337676--47337781	52	2.0	53	98	1	205	24	7	16	50	1.71
47338161--47338280	63	1.9	63	94	0	213	36	12	15	35	1.85
47338899--47338934	15	2.4	15	90	9	56	75	5	13	5	1.17
47339645--47339689	17	2.5	18	82	7	56	33	4	0	62	1.15
47344273--47344316	15	2.9	15	83	12	63	70	0	15	13	1.17
47345833--47346958	133	8.5	133	86	6	1413	28	18	23	28	1.98
47345833--47347024	265	4.5	264	86	5	1441	28	19	23	28	1.98
47345843--47347008	395	3.0	390	89	3	1233	28	19	23	28	1.98
47347826--47347861	15	2.4	15	90	9	56	75	5	13	5	1.17
47348572--47348615	17	2.4	18	81	7	54	34	4	0	61	1.16
47348596--47348640	22	2.0	24	86	8	67	31	4	4	60	1.37
47349371--47350132	383	2.0	383	99	0	1506	31	21	17	30	1.96
47369776--47369813	19	2.1	19	85	9	53	44	0	10	44	1.38
47374144--47374331	91	2.1	92	97	1	360	35	6	7	50	1.57
47382335--47382472	73	1.9	73	87	0	204	18	11	18	52	1.74
47383967--47384246	75	3.8	75	86	6	421	20	18	28	32	1.97
47384005--47384141	42	3.5	41	74	17	155	21	16	27	34	1.95
47393581--47393900	163	2.0	163	93	0	550	30	11	14	43	1.81
47400549--47400733	92	2.0	92	100	0	370	36	12	15	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47401353--47401396	18	2.4	19	88	3	63	59	4	0	36	1.18
47408391--47408439	18	2.6	19	78	18	57	73	4	2	20	1.10
47424410--47424667	126	2.0	126	90	2	403	27	18	26	27	1.98
47424673--47424757	42	2.0	42	88	0	125	28	3	40	28	1.73
47427038--47427113	36	2.0	37	82	10	91	52	2	0	44	1.14
47430895--47430929	18	1.9	18	94	0	61	28	37	22	11	1.89
47437569--47437604	3	12.0	3	100	0	72	66	0	0	33	0.92
47443387--47443471	42	2.0	42	90	4	136	28	3	38	29	1.73
47452393--47452462	16	4.4	16	96	0	104	31	0	35	32	1.58
47452441--47452550	45	2.6	43	80	9	129	33	5	29	31	1.80
47460040--47460064	13	1.9	13	100	0	50	44	0	16	40	1.47
47460719--47460771	24	2.2	25	93	3	90	18	24	18	37	1.94
47468824--47468876	3	17.3	3	96	3	97	64	0	0	35	0.94
47476739--47476770	11	2.8	12	90	9	50	56	3	0	40	1.15
47481844--47482541	284	2.5	284	94	1	1192	43	17	10	29	1.82
47485595--47485636	18	2.4	17	84	7	57	66	2	0	30	1.04
47487536--47487609	38	1.9	38	94	0	130	28	12	24	35	1.91
47490221--47490256	12	3.0	12	91	0	54	38	0	11	50	1.38
47490558--47490606	3	15.7	3	79	8	53	67	0	4	28	1.09
47490558--47490610	10	5.3	10	80	14	65	67	0	3	28	1.07
47491781--47491875	41	2.4	39	82	6	113	31	27	17	23	1.97
47492803--47492859	3	19.3	3	96	3	107	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47495650--47495687	2	20.0	2	89	10	62	47	0	0	52	1.00
47496636--47496681	3	15.3	3	100	0	92	67	0	0	32	0.91
47503684--47503727	21	2.1	21	83	8	54	65	2	6	25	1.28
47506289--47506323	14	2.5	14	90	0	52	45	0	0	54	0.99
47507817--47507885	30	2.3	30	82	7	77	28	4	13	53	1.58
47507836--47507896	30	2.1	29	81	3	68	31	4	9	54	1.55
47509517--47509560	22	2.0	22	100	0	88	13	18	13	54	1.71
47515704--47515753	23	2.2	23	96	3	93	20	34	4	42	1.70
47528054--47528097	18	2.5	18	82	13	56	52	4	0	43	1.22
47528074--47528122	25	2.0	25	84	8	64	53	4	2	40	1.32
47531336--47531402	33	2.0	33	88	0	98	53	8	11	25	1.66
47531324--47531406	33	2.7	29	77	13	85	51	8	15	24	1.71
47531362--47532590	614	2.0	614	100	0	2458	37	13	13	35	1.84
47533802--47533868	33	2.0	33	88	0	98	53	8	11	25	1.66
47533790--47533872	33	2.7	29	77	13	85	51	8	15	24	1.71
47539454--47539484	5	6.2	5	96	0	53	3	19	41	35	1.67
47540958--47540983	12	2.2	12	100	0	52	30	53	7	7	1.57
47553972--47554070	28	3.8	28	68	15	93	47	13	5	34	1.64
47561198--47561235	20	1.9	20	89	10	60	23	10	0	65	1.23
47576327--47576377	14	3.5	14	77	15	50	56	0	3	39	1.18
47577159--47577187	11	2.6	11	100	0	58	58	6	0	34	1.25
47601063--47601120	20	2.8	21	82	10	75	27	0	13	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47605684--47605901	108	2.0	109	98	0	420	20	25	29	25	1.99
47606059--47606133	34	2.2	33	84	9	98	25	29	1	44	1.63
47606059--47606135	22	3.5	22	81	18	97	25	28	1	44	1.62
47606059--47606135	11	6.9	11	74	21	72	25	28	1	44	1.62
47607020--47607082	31	2.0	31	84	6	83	47	3	1	47	1.27
47609004--47609108	54	2.0	54	83	9	137	41	0	29	28	1.56
47614139--47614224	41	2.1	40	84	2	109	32	9	26	31	1.88
47621192--47621430	131	1.8	131	88	4	365	50	10	2	36	1.49
47621192--47621430	87	2.7	86	90	2	361	50	10	2	36	1.49
47621192--47621430	44	5.5	44	89	2	356	50	10	2	36	1.49
47621474--47621558	26	3.4	26	71	22	74	62	0	11	25	1.29
47621476--47621553	21	3.4	21	71	21	59	61	0	12	25	1.31
47621481--47621533	27	2.0	27	85	10	74	62	0	15	22	1.32
47621463--47621558	48	2.0	48	87	8	140	63	1	12	22	1.35
47621550--47621608	17	3.6	16	79	9	57	66	1	13	18	1.34
47621810--47621849	21	1.9	21	94	0	71	65	0	5	30	1.14
47621982--47622045	21	3.0	21	82	8	94	54	0	12	32	1.38
47626561--47626845	90	3.2	90	84	3	378	52	14	6	25	1.65
47627544--47627841	104	2.8	105	81	8	352	32	20	19	27	1.97
47627543--47627913	109	3.5	104	78	8	349	32	21	20	25	1.97
47639181--47639215	2	18.0	2	94	5	63	51	0	0	48	1.00
47648152--47648204	24	2.2	24	96	0	97	15	26	22	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47656730--47656765	18	2.1	18	90	10	58	36	0	2	61	1.11
47662186--47662213	3	9.3	3	100	0	56	35	64	0	0	0.94
47665157--47665189	15	2.1	15	94	5	57	75	0	0	24	0.80
47670857--47671272	207	2.0	207	99	0	814	25	18	23	32	1.97
47678758--47678786	4	7.2	4	100	0	58	48	24	0	27	1.51
47680277--47680494	76	2.9	76	94	0	366	42	12	7	38	1.71
47690774--47690819	6	7.7	6	100	0	92	65	0	0	34	0.93
47691860--47691912	22	2.5	22	78	9	65	73	3	9	13	1.21
47702565--47702607	6	7.5	6	92	7	56	83	0	0	16	0.64
47702565--47702599	5	6.6	5	93	6	52	82	0	0	17	0.66
47702563--47702614	10	5.4	9	78	19	52	80	1	0	17	0.80
47702563--47702609	13	3.8	12	78	16	51	82	0	0	17	0.66
47705405--47705456	18	2.9	17	73	18	52	73	13	11	1	1.19
47716222--47716273	13	4.0	13	78	7	61	48	9	17	25	1.77
47716215--47716299	23	3.5	24	73	14	68	48	10	16	24	1.78
47716256--47716301	23	2.0	23	88	12	69	52	10	15	21	1.73
47716883--47716926	19	2.3	19	84	7	63	29	0	0	70	0.88
47716883--47716928	20	2.4	19	79	10	58	30	0	0	69	0.89
47733952--47733995	3	14.7	3	90	9	72	68	0	0	31	0.90
47738995--47739032	2	19.0	2	94	0	67	47	0	0	52	1.00
47740001--47740071	21	3.3	21	70	3	70	56	12	1	29	1.45
47739981--47740088	43	2.5	42	91	4	171	59	9	1	29	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47742915--47742960	17	2.6	17	83	16	58	63	0	2	34	1.07
47742911--47742974	28	2.3	27	82	12	69	65	3	1	29	1.17
47742964--47743017	26	2.0	27	85	3	74	55	3	3	37	1.35
47752184--47752216	13	2.5	13	95	0	57	21	0	30	48	1.50
47752290--47752328	12	3.2	13	89	10	64	23	0	12	64	1.28
47756474--47756858	190	2.0	191	99	0	763	40	9	7	42	1.66
47766128--47766158	3	10.3	3	100	0	62	67	0	0	32	0.91
47766828--47766873	13	3.7	13	81	16	53	69	2	10	17	1.27
47776804--47776842	20	2.0	20	89	0	60	69	0	15	15	1.20
47779819--47779909	23	4.1	23	69	11	82	21	27	6	43	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163