genome.fa.s4.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  56  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18191193--18191226	17	2.0	17	94	0	59	73	8	0	17	1.08
18191198--18191231	13	2.7	13	90	4	52	76	5	0	17	0.98
18200321--18200346	11	2.4	11	100	0	52	15	19	11	53	1.71
18201999--18202088	25	3.6	25	69	11	67	27	15	24	32	1.95
18207366--18207420	17	3.2	17	73	19	60	36	16	5	41	1.71
18221609--18221636	12	2.3	12	100	0	56	7	7	42	42	1.59
18225402--18225645	29	8.4	29	84	1	267	24	26	12	36	1.91
18233481--18233562	23	3.6	23	88	0	119	24	21	24	29	1.99
18233572--18233605	16	2.1	17	88	5	52	38	5	17	38	1.74
18234436--18234866	219	2.0	219	88	0	639	25	12	19	42	1.87
18240373--18240406	15	2.3	15	90	10	52	17	26	5	50	1.69
18241704--18242128	220	1.9	220	88	2	649	26	13	19	40	1.88
18246916--18247129	107	2.0	107	98	0	410	28	16	5	50	1.67
18247180--18247211	16	2.0	16	93	0	55	25	15	0	59	1.36
18256501--18256600	49	2.0	49	86	0	137	51	9	7	33	1.60
18258925--18259026	42	2.5	42	77	4	100	22	36	19	21	1.95
18260839--18260940	39	2.6	39	85	0	141	31	4	19	44	1.72
18262113--18262178	33	2.0	33	96	0	123	33	6	19	40	1.76
18263295--18263396	42	2.5	42	79	4	109	22	30	21	25	1.99
18268090--18268126	16	2.3	16	86	13	58	40	0	2	56	1.13
18268543--18268644	42	2.5	42	79	4	109	22	30	21	25	1.99
18273338--18273374	16	2.3	16	86	13	58	40	0	2	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18278861--18278907	20	2.3	20	86	13	62	55	0	8	36	1.31
18278927--18278972	24	2.0	23	86	4	65	43	8	15	32	1.77
18278995--18279052	18	3.4	18	69	13	59	60	6	6	25	1.48
18283098--18283474	50	7.6	50	83	3	406	22	30	21	25	1.98
18286698--18286927	43	5.3	44	72	13	197	29	11	16	43	1.83
18290269--18290390	41	3.1	41	63	25	109	31	3	6	59	1.39
18290253--18290406	76	2.0	77	98	1	301	33	3	5	57	1.39
18290283--18290404	37	3.1	41	64	17	114	31	4	6	58	1.43
18306953--18307091	46	3.0	45	89	4	208	29	26	9	34	1.88
18313723--18313789	35	1.9	36	85	11	95	37	20	8	32	1.84
18314992--18315062	27	2.7	26	84	4	90	29	23	23	22	1.99
18330347--18330444	49	2.0	50	84	6	128	24	18	36	20	1.94
18330700--18330733	17	1.9	18	88	5	52	23	8	17	50	1.74
18331981--18332051	27	2.6	27	97	0	133	18	29	28	23	1.98
18335073--18335199	26	4.3	29	70	17	84	37	2	19	40	1.65
18335215--18335297	39	2.2	38	86	4	114	37	6	8	48	1.58
18335543--18335575	17	1.9	17	88	11	50	24	3	27	45	1.68
18335789--18335827	7	5.6	7	84	0	51	30	2	30	35	1.71
18345028--18345136	26	3.7	29	72	16	80	38	2	18	40	1.65
18345152--18345234	39	2.2	38	86	4	114	37	6	8	48	1.58
18345569--18345601	17	1.9	17	88	11	50	24	3	27	45	1.68
18345815--18345853	7	5.6	7	84	0	51	30	2	30	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18363599--18363694	28	3.5	26	73	15	88	65	1	22	10	1.29
18367762--18367796	3	11.7	3	93	0	61	71	0	28	0	0.86
18369631--18369683	24	2.2	25	77	16	58	22	16	5	54	1.63
18369864--18369893	14	2.1	15	93	6	53	46	0	0	53	1.00
18371640--18371671	17	1.9	17	93	6	57	65	3	0	31	1.08
18371905--18371989	20	4.3	19	71	11	73	37	5	7	49	1.54
18376131--18377047	127	7.2	127	99	0	1816	22	17	28	31	1.97
18377208--18377239	16	1.9	17	93	6	57	40	0	21	37	1.54
18379143--18379192	15	3.3	15	82	17	68	50	0	0	50	1.00
18379405--18379435	2	16.0	2	93	6	55	48	0	0	51	1.00
18380032--18380068	2	19.0	2	94	5	67	48	0	51	0	1.00
18382331--18382368	14	2.9	14	88	7	53	36	0	0	63	0.95
18382357--18382393	18	2.0	20	89	10	60	40	0	2	56	1.13
18385610--18385815	91	2.3	91	81	3	254	30	22	16	31	1.95
18388672--18388744	30	2.4	30	97	0	137	32	8	15	43	1.76
18402295--18402337	17	2.4	18	88	3	61	60	16	4	18	1.52
18402980--18403095	23	5.0	23	77	14	96	53	1	8	36	1.42
18403002--18403094	46	2.0	48	83	12	122	54	2	6	36	1.38
18403006--18403109	24	4.4	23	72	18	79	55	1	5	36	1.35
18404160--18404194	17	2.1	17	88	0	52	14	8	31	45	1.75
18404197--18404235	17	2.2	19	86	9	55	28	0	20	51	1.48
18412076--18412177	50	2.0	50	98	0	195	28	18	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18416864--18416938	24	3.2	23	77	5	71	29	22	22	25	1.99
18418473--18418519	23	2.0	25	87	8	71	29	0	12	57	1.36
18418485--18418528	22	2.0	23	81	4	54	31	0	13	54	1.39
18422546--18422879	166	2.0	167	99	0	661	41	7	16	35	1.76
18425442--18425502	26	2.3	27	80	2	70	44	9	18	27	1.81
18429993--18430068	40	1.9	40	91	0	125	43	18	23	14	1.87
18436785--18436817	11	3.1	11	86	8	50	18	0	3	78	0.87
18440497--18440613	61	1.9	61	91	0	189	35	18	20	25	1.96
18449152--18449788	323	2.0	323	89	1	983	34	6	19	39	1.78
18457947--18457996	26	1.9	26	84	8	66	30	22	14	34	1.93
18460087--18460125	20	1.9	21	84	5	53	35	12	2	48	1.55
18470894--18470925	14	2.3	14	100	0	64	37	0	25	37	1.56
18472830--18472871	22	1.9	22	100	0	84	28	23	4	42	1.74
18498184--18498245	20	3.1	20	76	0	61	33	9	8	48	1.65
18505820--18505884	24	2.7	23	81	15	69	69	1	20	9	1.24
18519477--18519523	17	2.8	17	75	12	51	23	4	6	65	1.33
18522501--18522531	16	1.9	16	100	0	62	61	0	19	19	1.35
18551281--18551305	13	1.9	13	100	0	50	12	0	56	32	1.36
18571037--18571070	17	2.1	17	88	5	52	73	14	2	8	1.19
18581341--18581379	17	2.3	17	90	0	60	20	23	38	17	1.93
18593721--18593822	40	2.5	40	85	0	141	23	31	16	28	1.96
18593754--18593821	20	3.4	20	72	8	66	20	33	17	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18597561--18597669	27	4.1	27	84	1	139	17	31	21	30	1.96
18600730--18600860	50	2.6	51	88	1	192	32	29	16	22	1.95
18603177--18603785	310	2.0	310	92	1	1024	33	21	7	37	1.82
18611346--18611537	51	3.8	51	82	5	253	23	18	26	31	1.97
18611354--18611539	102	1.8	102	94	0	327	23	18	25	31	1.98
18618862--18618921	29	2.2	27	85	8	77	23	13	18	45	1.84
18619191--18619259	22	3.1	22	87	0	102	31	27	1	39	1.66
18619212--18619317	52	2.1	51	85	1	140	33	31	1	33	1.69
18619348--18619405	29	2.0	28	90	9	91	37	0	1	60	1.07
18619363--18619406	20	2.3	20	84	7	56	36	0	0	63	0.95
18619352--18619412	28	2.1	29	85	8	81	37	0	1	60	1.07
18619351--18619412	29	2.1	29	85	11	83	37	0	1	61	1.06
18620217--18620241	7	3.6	7	100	0	50	28	0	12	60	1.32
18621787--18621914	29	4.3	31	87	8	178	42	24	0	32	1.60
18621798--18621913	31	3.9	31	87	7	152	42	26	0	30	1.61
18621787--18621916	30	4.4	30	86	6	176	43	23	0	31	1.59
18622842--18623357	125	4.1	125	95	1	901	33	21	14	30	1.94
18623375--18623530	52	3.0	50	89	6	249	36	27	10	25	1.89
18623710--18623768	29	2.1	27	84	9	75	44	18	13	23	1.86
18629319--18629388	33	2.1	33	86	5	97	38	11	18	31	1.86
18630266--18630299	13	2.6	13	90	9	52	11	17	0	70	1.16
18632082--18632146	6	10.3	6	74	9	58	4	18	3	73	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18635525--18635575	24	2.2	22	83	13	59	35	0	3	60	1.15
18641716--18641807	42	2.2	42	90	0	148	45	8	6	39	1.61
18645728--18645776	24	2.0	24	96	0	89	12	30	12	44	1.78
18647254--18647288	11	3.1	11	88	8	52	5	8	25	60	1.49
18651649--18651674	1	26.0	1	100	0	52	100	0	0	0	0.00
18652300--18652345	19	2.3	20	75	14	51	28	2	10	58	1.43
18658820--18658986	40	4.2	40	76	3	129	28	14	23	33	1.94
18660746--18660860	20	5.8	19	72	10	88	10	26	20	41	1.85
18668309--18668355	24	2.0	24	91	0	76	51	21	4	23	1.65
18676561--18676589	13	2.1	14	93	6	51	68	13	6	10	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163