genome.fa.s4.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  107  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34368504--34368572	28	2.5	27	88	6	95	52	1	5	40	1.34
34376766--34376815	20	2.5	19	80	6	55	68	6	24	2	1.23
34385438--34385489	24	2.2	24	89	0	77	38	1	7	51	1.42
34389982--34390007	4	6.5	4	100	0	52	76	0	0	23	0.78
34390641--34390740	42	2.4	42	94	0	173	36	12	28	24	1.91
34392767--34392819	24	2.2	24	89	0	79	43	1	3	50	1.30
34401502--34401554	27	2.0	27	85	7	72	62	5	7	24	1.44
34408997--34409066	36	1.9	36	88	0	104	28	5	31	34	1.81
34428138--34428163	13	2.0	13	100	0	52	23	0	0	76	0.78
34435472--34435515	16	2.8	16	83	10	54	52	0	11	36	1.38
34439031--34439067	18	2.0	19	89	5	58	70	0	5	24	1.08
34441770--34441812	18	2.4	18	80	0	50	67	2	4	25	1.22
34447659--34447892	116	2.0	117	94	0	407	41	18	12	27	1.87
34451370--34451520	77	2.0	77	84	5	198	21	22	20	35	1.96
34457646--34457692	22	2.1	22	88	0	67	53	2	6	38	1.39
34461368--34461432	27	2.4	27	87	5	87	26	15	6	52	1.66
34461368--34461449	27	3.0	26	81	10	67	23	17	7	52	1.69
34474367--34474418	3	17.3	3	95	0	95	32	1	0	65	1.04
34475868--34475911	20	2.2	20	84	4	54	65	6	6	20	1.39
34476347--34476489	48	3.0	48	87	0	196	13	39	13	32	1.85
34481309--34481343	17	2.1	16	89	5	52	65	2	5	25	1.28
34482439--34482483	21	2.1	21	83	0	54	51	0	2	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34486048--34486105	31	1.9	31	89	3	91	31	8	13	46	1.74
34486450--34486480	16	1.9	16	100	0	62	41	25	0	32	1.56
34494002--34494032	16	1.9	16	93	0	53	38	6	0	54	1.26
34494729--34494757	3	9.7	3	100	0	58	68	0	0	31	0.89
34501034--34501067	16	2.1	16	88	0	50	32	0	0	67	0.91
34501067--34501104	20	1.9	20	89	10	60	36	0	2	60	1.11
34503927--34503982	18	3.1	18	86	2	76	12	1	44	41	1.53
34507501--34507530	15	1.9	15	93	6	51	0	33	3	63	1.11
34513333--34513394	30	2.1	30	100	0	124	40	9	6	43	1.63
34513333--34513382	17	3.2	17	69	30	56	40	10	6	44	1.63
34513957--34514088	54	2.4	54	100	0	264	31	22	19	26	1.98
34516037--34516144	19	5.7	19	72	16	57	33	0	6	60	1.23
34517153--34517178	5	5.2	5	100	0	52	19	19	19	42	1.90
34521243--34521281	19	2.1	19	85	0	51	15	28	35	20	1.93
34521262--34521709	199	2.2	200	95	0	792	27	18	20	33	1.96
34521932--34521958	2	13.5	2	100	0	54	48	0	0	51	1.00
34524835--34524923	42	2.1	42	91	0	142	30	31	22	15	1.95
34529875--34530048	47	3.7	47	86	4	228	17	20	18	43	1.88
34529875--34530048	95	1.8	93	83	7	226	17	20	18	43	1.88
34530020--34530142	45	2.7	45	92	2	194	22	20	19	37	1.94
34531441--34531465	13	1.9	13	100	0	50	40	16	0	44	1.47
34533661--34533789	43	3.0	42	81	17	174	30	28	18	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34534159--34534466	114	2.7	114	93	0	519	25	22	26	25	2.00
34534731--34534761	15	2.1	15	93	0	53	19	0	45	35	1.51
34534727--34534836	14	7.5	15	67	17	54	27	0	38	33	1.63
34534777--34534823	22	2.1	22	81	14	53	34	0	31	34	1.58
34534998--34535049	14	3.6	14	71	5	50	32	0	32	34	1.58
34535036--34535085	24	2.0	26	88	7	77	24	0	34	42	1.55
34535083--34535115	14	2.4	14	90	10	50	24	0	42	33	1.55
34535648--34535802	84	1.8	85	92	1	267	42	14	15	27	1.86
34535821--34536014	97	1.9	103	85	9	274	49	10	11	28	1.72
34540027--34540231	43	4.8	43	87	2	288	22	18	28	31	1.97
34540324--34540366	22	2.0	22	85	0	59	46	27	16	9	1.77
34542367--34542410	23	1.9	23	95	0	79	50	13	0	36	1.42
34546821--34546927	48	2.3	47	90	4	162	38	2	13	45	1.57
34548220--34548325	21	5.0	21	80	4	88	16	25	16	41	1.89
34556078--34556120	21	2.0	21	95	0	77	13	34	18	32	1.90
34559147--34559280	38	3.5	38	76	9	139	23	16	26	33	1.96
34561019--34561148	42	3.1	42	80	2	127	40	18	23	16	1.90
34561076--34561143	21	3.2	21	68	15	59	44	17	22	16	1.87
34570665--34570813	73	2.1	74	82	9	184	29	30	0	40	1.57
34573169--34573222	12	4.5	12	90	4	74	33	0	27	38	1.57
34573182--34573222	6	6.8	6	97	0	73	34	0	29	36	1.58
34573947--34573976	12	2.5	12	100	0	60	6	26	56	10	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34578926--34578960	17	2.1	17	89	10	54	48	2	0	48	1.16
34579985--34580028	11	3.8	12	80	19	58	25	31	0	43	1.55
34581513--34581550	18	2.1	18	90	0	58	21	28	7	42	1.81
34582150--34582365	22	10.5	22	71	14	138	52	28	0	18	1.49
34582101--34582366	37	6.9	37	75	16	211	51	28	0	19	1.50
34582217--34582258	15	2.8	15	85	0	66	54	28	0	16	1.42
34582186--34582366	59	3.1	59	76	12	156	52	29	0	17	1.49
34582276--34582390	15	7.9	15	75	14	68	47	33	0	19	1.49
34587607--34587650	22	2.0	22	82	8	54	20	0	11	68	1.20
34587802--34588367	126	4.5	125	83	3	690	29	22	18	29	1.97
34587822--34588364	250	2.2	251	89	1	811	29	21	18	30	1.97
34593264--34593749	126	3.9	125	84	6	660	30	22	17	29	1.97
34593265--34593754	250	2.0	250	94	0	865	30	22	17	29	1.96
34599518--34599552	11	3.1	11	91	4	52	0	17	0	82	0.66
34614499--34614532	15	2.2	16	89	5	52	58	0	5	35	1.22
34615782--34615816	6	5.8	6	89	0	52	11	17	5	65	1.43
34616996--34617020	2	12.5	2	100	0	50	52	0	0	48	1.00
34626613--34626648	15	2.4	15	95	0	63	30	8	0	61	1.26
34636432--34636464	2	16.5	2	93	0	57	3	48	0	48	1.17
34639244--34639436	95	2.0	97	84	8	257	22	17	25	34	1.95
34641737--34642207	235	2.0	235	100	0	942	29	22	14	33	1.93
34643753--34643816	31	2.1	31	100	0	128	39	12	18	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34646068--34646097	16	1.9	16	93	6	53	40	3	0	56	1.16
34646432--34646458	6	4.5	6	100	0	54	66	14	18	0	1.25
34654608--34654635	12	2.3	12	100	0	56	39	0	25	35	1.56
34657106--34657132	6	4.5	6	100	0	54	51	29	0	18	1.46
34657144--34657175	6	5.3	6	100	0	64	31	53	0	15	1.43
34661504--34661554	18	2.8	18	81	0	57	13	56	7	21	1.62
34678777--34678854	27	2.9	27	82	0	93	33	21	28	16	1.95
34679034--34679504	9	52.4	9	99	0	935	22	11	32	33	1.89
34679665--34679689	12	2.1	12	100	0	50	16	24	36	24	1.94
34687299--34687328	1	30.0	1	93	0	51	96	0	3	0	0.21
34688656--34688696	3	13.7	3	94	0	73	2	0	29	68	1.03
34691559--34691594	6	6.0	6	93	0	63	33	2	16	47	1.61
34691670--34691854	78	2.4	76	83	6	239	24	25	22	27	2.00
34703274--34703323	24	2.1	24	85	7	66	30	0	22	48	1.51
34711572--34711617	21	2.2	22	84	7	60	52	2	0	45	1.13
34711604--34711649	7	7.1	7	85	9	55	58	0	0	41	0.98
34711956--34712001	7	7.1	7	85	9	55	58	0	0	41	0.98
34711570--34712275	352	2.0	353	99	0	1405	36	13	8	40	1.76
34712629--34712682	14	3.8	14	80	4	54	40	12	9	37	1.76
34723689--34723718	3	10.0	3	100	0	60	33	0	0	66	0.92
34724348--34724571	125	1.8	125	89	3	355	53	11	7	27	1.63
34727229--34727281	23	2.3	23	78	12	56	35	0	3	60	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34728007--34728058	22	2.4	22	81	9	54	50	3	1	44	1.31
34730422--34730458	19	1.9	19	89	10	58	67	0	24	8	1.17
34742921--34743365	97	4.6	97	95	0	791	39	17	1	41	1.58
34744823--34744887	28	2.3	28	91	0	112	47	10	32	9	1.70
34749456--34749552	45	2.2	45	83	5	117	32	27	5	34	1.79
34749532--34749562	16	1.9	16	100	0	62	19	35	6	38	1.77
34751911--34751962	24	2.2	24	85	0	68	13	32	15	38	1.86
34752695--34752760	21	3.1	21	91	0	105	7	25	9	57	1.56
34755472--34756204	366	2.0	366	94	0	1286	40	9	16	33	1.81
34756715--34756749	18	1.9	18	88	11	54	54	5	0	40	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163