genome.fa.s4.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  23  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7192704--7192729	4	6.5	4	100	0	52	46	0	0	53	1.00
7192704--7192781	32	2.5	31	85	10	106	51	1	0	47	1.09
7203285--7203468	41	4.5	41	86	2	244	18	18	29	33	1.95
7205255--7205451	98	2.0	99	98	1	387	49	5	8	37	1.54
7205441--7205641	43	4.7	43	77	8	187	24	14	27	32	1.95
7205814--7205931	44	2.7	44	90	2	184	25	17	24	32	1.97
7207731--7208237	250	2.0	251	98	1	991	37	12	13	37	1.81
7212876--7213503	143	4.4	142	83	5	706	27	21	20	30	1.98
7213039--7213645	44	12.8	44	66	16	178	26	21	20	30	1.98
7212939--7213645	44	14.7	50	64	21	157	27	22	20	30	1.98
7213339--7213557	98	2.2	98	87	0	303	28	20	21	29	1.98
7213188--7213650	241	1.9	242	89	1	723	26	20	20	31	1.98
7214479--7214532	16	3.4	16	74	23	51	9	12	0	77	0.98
7214486--7214546	26	2.4	26	80	17	67	11	9	1	77	1.07
7214632--7214664	14	2.3	15	89	5	50	24	33	15	27	1.95
7224086--7224128	22	2.0	22	85	0	59	51	2	2	44	1.27
7224669--7224711	18	2.4	19	77	22	56	27	0	2	69	1.00
7225576--7225611	14	2.6	14	86	0	54	8	36	0	55	1.30
7227600--7227643	8	5.5	8	100	0	88	36	13	11	38	1.81
7227644--7227933	128	2.3	128	90	1	438	32	22	20	25	1.97
7230405--7230455	12	4.4	12	76	18	63	39	13	0	47	1.43
7234062--7234194	71	1.9	72	84	4	180	27	20	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7237557--7237591	18	2.0	17	88	5	52	45	0	0	54	0.99
7237509--7237696	61	3.1	61	69	14	199	43	1	6	48	1.38
7237489--7237731	120	2.0	120	100	0	486	44	1	5	48	1.36
7237677--7237711	18	2.0	17	88	5	52	45	0	0	54	0.99
7241406--7241456	11	4.6	11	90	4	77	43	1	33	21	1.64
7242220--7242262	22	2.0	22	85	0	59	65	0	0	34	0.93
7243965--7244030	27	2.4	27	92	0	114	27	24	37	10	1.88
7244167--7244199	3	11.3	3	87	6	50	66	0	30	3	1.06
7244170--7244196	14	1.9	14	100	0	54	66	0	29	3	1.09
7244167--7244203	17	2.2	16	95	4	65	67	0	29	2	1.04
7245741--7246184	223	2.0	223	96	0	825	25	18	19	36	1.95
7246754--7246788	6	5.8	6	86	0	52	34	28	37	0	1.58
7246756--7246788	12	2.8	12	100	0	66	36	24	39	0	1.56
7250239--7250283	22	2.1	21	87	4	63	0	31	4	64	1.13
7250241--7250287	13	3.8	12	74	20	51	0	31	4	63	1.13
7250349--7250451	27	3.8	27	84	7	147	22	35	21	20	1.96
7255760--7255845	45	1.9	45	87	0	127	37	22	13	26	1.92
7255852--7255932	26	3.2	26	64	22	71	32	27	16	24	1.96
7258708--7258800	47	2.0	48	84	2	125	32	27	16	23	1.96
7265513--7265542	12	2.5	12	94	0	51	53	0	10	36	1.35
7277890--7278084	98	2.0	98	88	0	291	38	22	8	30	1.84
7278379--7278411	8	4.0	8	96	4	57	60	0	12	27	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7278867--7278909	21	2.0	21	82	8	52	67	0	2	30	1.03
7279222--7279291	30	2.3	30	90	0	113	15	32	37	14	1.88
7286625--7286680	29	1.9	29	92	0	94	44	35	5	14	1.68
7292964--7293116	76	2.0	77	98	1	299	56	2	13	27	1.50
7297215--7297424	43	4.9	42	82	11	214	31	28	16	22	1.96
7309543--7309686	63	2.3	63	82	2	173	22	22	33	20	1.97
7310539--7310567	15	1.9	15	100	0	58	41	6	13	37	1.72
7314315--7314371	25	2.3	25	85	11	73	77	8	14	0	0.99
7314313--7314370	18	3.4	17	75	15	57	79	8	12	0	0.94
7320848--7320882	10	3.3	10	92	8	52	25	0	8	65	1.21
7320848--7320882	12	3.1	12	84	16	56	25	0	8	65	1.21
7321009--7321046	9	4.2	9	86	0	58	31	10	10	47	1.72
7325977--7326016	16	2.5	16	91	0	62	37	2	27	32	1.70
7326039--7326068	11	2.8	11	95	5	53	50	0	16	33	1.46
7332573--7332599	13	2.1	13	100	0	54	40	14	22	22	1.90
7335427--7335456	15	2.0	15	93	0	51	56	6	3	33	1.42
7338544--7338639	33	3.2	28	68	16	68	32	21	20	25	1.98
7338788--7338852	27	2.4	27	87	7	89	35	23	23	18	1.96
7338978--7339123	26	5.7	26	83	8	165	25	13	21	39	1.90
7341336--7341394	16	3.7	16	86	0	82	32	28	1	37	1.67
7342292--7342325	17	1.9	18	88	5	52	52	0	5	41	1.25
7342325--7342370	23	2.0	23	87	8	67	43	0	10	45	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7347607--7347688	34	2.4	35	82	10	89	41	3	14	40	1.64
7352720--7352763	19	2.3	19	96	0	79	34	18	11	36	1.86
7352967--7353172	44	4.6	45	71	11	147	29	25	17	27	1.97
7362067--7362115	25	2.0	25	95	0	89	57	4	8	30	1.47
7362852--7362961	19	5.7	19	89	4	148	38	14	10	37	1.80
7362858--7362961	40	2.7	40	93	3	176	37	15	9	37	1.80
7368391--7368430	19	2.0	20	90	4	64	52	0	2	45	1.14
7369634--7369673	16	2.5	16	84	8	55	52	7	12	27	1.66
7370562--7370648	42	2.1	42	100	0	174	26	12	16	44	1.83
7373472--7373842	44	8.4	44	69	8	232	29	15	24	29	1.96
7373472--7373842	89	4.2	89	95	0	645	29	15	24	29	1.96
7374199--7374300	51	2.0	51	98	0	195	37	35	16	10	1.84
7377639--7377691	19	2.7	20	78	18	58	37	7	0	54	1.29
7383220--7383453	44	5.3	45	77	8	282	32	18	22	26	1.97
7383250--7383481	44	5.3	44	78	8	274	34	17	22	25	1.96
7383225--7383481	88	2.9	88	99	0	505	31	18	23	26	1.97
7383468--7383586	44	2.7	45	76	10	118	31	17	21	29	1.96
7388538--7388562	11	2.3	11	100	0	50	60	0	0	40	0.97
7390269--7390336	29	2.4	29	78	7	77	22	38	23	16	1.93
7391021--7391062	21	2.0	21	90	4	68	71	2	21	4	1.16
7391870--7391913	21	2.3	19	84	11	54	68	4	11	15	1.36
7392124--7392167	21	2.3	19	84	11	54	68	4	11	15	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7391809--7392320	254	2.0	255	99	0	1017	45	8	7	39	1.62
7392532--7392625	20	4.7	21	75	10	81	36	21	9	32	1.86
7394553--7394583	2	15.5	2	100	0	62	48	0	0	51	1.00
7396186--7396237	23	2.3	23	80	6	61	38	13	9	38	1.77
7396303--7396357	19	2.9	19	91	5	85	29	29	0	41	1.56
7396302--7396474	73	2.4	73	80	9	201	24	32	1	41	1.65
7399883--7399972	43	2.1	43	97	0	171	27	6	17	47	1.73
7402647--7402718	27	2.7	27	84	0	99	25	34	31	8	1.85
7402827--7403125	158	1.9	159	88	3	458	53	9	9	28	1.64
7403125--7403533	158	2.6	158	89	3	619	25	10	9	54	1.65
7406565--7407374	405	2.0	405	100	0	1620	35	18	9	37	1.82
7408461--7408522	11	5.8	10	76	12	61	1	22	3	72	1.08
7408454--7408512	29	2.0	29	83	6	75	1	25	3	69	1.13
7408545--7408610	7	8.6	7	78	18	53	51	1	3	43	1.26
7408532--7408610	27	2.8	31	74	20	82	48	2	2	46	1.29
7408542--7408607	8	8.4	8	70	21	50	50	1	3	45	1.26
7416417--7416489	22	3.3	23	78	14	66	64	1	1	32	1.11
7416439--7416487	14	3.7	14	68	15	50	65	0	2	32	1.04
7417448--7417486	20	2.0	20	95	5	71	51	0	5	43	1.24
7418556--7418695	40	3.5	40	73	10	117	27	17	25	30	1.97
7419707--7419754	24	1.9	26	87	8	73	52	2	2	43	1.24
7428825--7428849	4	6.2	4	100	0	50	52	0	24	24	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7435888--7435926	11	3.4	11	80	13	51	51	0	2	46	1.14
7437146--7437209	21	3.0	22	72	9	69	18	18	25	37	1.94
7438385--7438438	25	2.2	25	83	6	65	50	9	16	24	1.74
7438928--7439036	55	2.0	55	94	0	191	34	17	28	19	1.94
7440894--7440939	20	2.3	20	88	7	67	36	0	8	54	1.32
7443884--7443926	22	2.0	22	81	9	52	23	11	9	55	1.64
7471551--7471681	60	2.2	58	85	8	167	51	3	3	42	1.33
7476203--7476247	21	2.0	23	83	8	58	35	15	26	22	1.94
7479589--7479642	21	2.6	21	93	0	90	16	18	20	44	1.87
7485996--7486094	50	2.0	50	84	7	130	33	18	12	36	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163