genome.fa.s4.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  45  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14559271--14559316	22	2.1	22	100	0	92	39	17	17	26	1.91
14580638--14580685	13	3.6	13	81	15	62	22	2	2	72	1.05
14583253--14583295	19	2.3	19	95	0	77	32	0	6	60	1.23
14593439--14593496	13	3.5	17	69	23	52	36	17	3	43	1.66
14593659--14593729	25	2.9	25	77	4	74	35	19	21	23	1.96
14593826--14593877	25	2.1	24	89	3	77	38	21	23	17	1.93
14602565--14602609	23	2.0	23	90	0	72	20	17	22	40	1.92
14607344--14607466	41	3.0	42	75	10	130	23	21	24	30	1.99
14607333--14607486	81	1.9	82	81	6	188	23	21	25	29	1.99
14607525--14607613	40	2.2	40	98	2	171	31	4	19	44	1.70
14609228--14609272	20	2.2	20	92	0	72	46	26	0	26	1.53
14610064--14610210	13	11.0	13	75	13	120	38	18	1	42	1.59
14610062--14610209	40	3.7	40	85	4	138	37	18	1	41	1.59
14610064--14610210	27	5.5	27	77	10	122	38	18	1	42	1.59
14610100--14610239	28	5.1	28	78	10	112	35	17	2	45	1.60
14610097--14610212	40	2.9	40	89	3	162	35	18	0	45	1.55
14610100--14610214	41	2.8	41	87	6	155	35	18	0	45	1.56
14611660--14611726	35	1.9	35	84	6	91	22	16	8	52	1.71
14611746--14611859	45	2.5	45	85	0	147	21	22	15	39	1.92
14612629--14612653	13	1.9	13	100	0	50	16	0	8	76	1.02
14616198--14616269	21	3.3	23	81	14	82	75	0	4	20	0.97
14616198--14616269	8	9.5	8	72	17	64	75	0	4	20	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14616201--14616269	13	5.3	13	68	18	54	75	0	4	20	0.97
14622116--14622155	20	2.0	20	90	0	62	27	10	12	50	1.72
14622225--14622275	26	2.2	24	78	21	56	60	5	0	33	1.21
14626114--14626629	184	2.8	183	89	0	762	43	19	8	28	1.81
14626297--14626569	31	8.9	30	67	11	115	43	20	8	27	1.80
14634507--14634547	21	2.0	21	85	9	57	48	9	7	34	1.64
14645155--14645198	20	2.2	20	100	0	88	9	20	4	65	1.38
14647415--14647478	28	2.4	28	81	5	78	75	0	18	6	1.01
14647418--14647478	33	1.9	31	87	12	88	75	0	18	6	1.01
14671202--14671228	3	9.0	3	100	0	54	33	0	0	66	0.92
14671575--14671636	31	2.0	31	83	3	79	67	3	16	12	1.35
14671772--14671847	39	1.9	39	94	0	134	28	15	22	32	1.95
14676216--14676245	10	2.8	11	90	10	53	36	0	26	36	1.57
14676693--14676759	26	2.6	27	77	11	70	13	19	23	43	1.86
14678719--14678773	28	2.0	28	100	0	110	49	14	25	10	1.76
14681177--14681408	124	1.9	124	90	0	374	43	15	6	35	1.72
14682061--14682112	24	2.2	24	85	0	68	53	9	3	32	1.51
14694748--14694818	36	2.0	36	82	0	88	23	21	25	29	1.99
14703142--14703173	15	2.1	16	88	11	50	21	3	21	53	1.60
14705300--14705355	28	2.0	28	100	0	112	32	10	25	32	1.90
14706155--14706199	11	4.1	11	88	0	72	20	33	2	44	1.63
14706155--14706215	22	2.8	22	87	5	79	22	32	1	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14706155--14706217	33	1.9	33	87	12	94	23	31	1	42	1.64
14706177--14706276	51	2.0	51	86	7	141	26	26	2	46	1.64
14707418--14707450	7	4.7	7	100	0	66	27	0	15	57	1.38
14707446--14707477	7	4.6	7	100	0	64	28	0	15	56	1.40
14707425--14707471	14	3.4	14	85	14	62	27	0	14	57	1.38
14708702--14708788	33	2.6	33	94	0	156	41	37	0	20	1.53
14708711--14708916	33	7.2	27	76	20	174	40	36	0	21	1.60
14708657--14708913	113	2.3	113	92	2	426	43	35	0	20	1.57
14708871--14708927	15	4.0	15	72	21	59	43	33	0	22	1.54
14708848--14709106	95	2.7	95	92	0	428	44	33	0	21	1.58
14708964--14709022	15	4.1	15	77	20	72	45	30	0	23	1.53
14708954--14709011	27	2.1	27	96	0	107	37	37	0	24	1.56
14709047--14709121	27	2.8	27	81	4	89	41	32	0	26	1.56
14709169--14709194	6	4.3	6	100	0	52	38	46	0	15	1.46
14709149--14709183	18	1.9	18	88	0	52	48	34	2	14	1.58
14708954--14709186	122	1.9	121	84	5	308	43	33	0	21	1.56
14709235--14709429	59	3.3	59	100	0	390	43	9	12	34	1.76
14709432--14709480	22	2.2	23	88	3	73	46	2	2	48	1.25
14709934--14709960	8	3.4	8	100	0	54	11	0	0	88	0.50
14710106--14710147	16	2.6	16	100	0	84	21	45	23	9	1.81
14710887--14710913	8	3.4	8	100	0	54	11	0	0	88	0.50
14711059--14711100	16	2.6	16	100	0	84	21	45	23	9	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14712388--14712439	21	2.5	21	87	6	70	28	1	32	36	1.69
14712389--14712475	24	3.8	24	69	10	56	28	3	35	32	1.74
14712470--14712504	3	11.7	3	93	0	61	34	28	37	0	1.58
14713281--14713399	11	11.4	11	74	19	103	37	2	0	59	1.11
14713264--14713402	41	3.2	41	79	16	154	35	2	0	61	1.08
14713333--14713408	40	1.9	40	94	0	134	36	2	0	60	1.11
14713382--14713421	21	1.9	21	89	0	62	37	2	0	60	1.11
14713381--14713439	22	2.8	21	80	14	59	40	1	3	54	1.27
14713799--14713852	20	2.8	20	86	5	76	22	1	1	74	1.02
14720222--14720246	12	2.1	12	100	0	50	76	0	16	8	1.02
14721303--14721347	22	2.0	23	82	4	56	51	0	26	22	1.49
14721312--14721354	21	2.0	21	86	13	61	55	0	18	25	1.42
14724207--14724301	38	2.5	39	81	6	113	60	3	7	29	1.40
14724662--14724837	87	2.0	88	97	1	336	27	16	7	47	1.74
14724827--14725028	10	20.5	10	66	20	72	31	2	3	61	1.29
14724837--14724891	21	2.7	21	82	2	76	34	1	3	60	1.25
14724900--14724939	18	2.3	17	87	12	55	32	0	2	65	1.06
14725690--14725789	42	2.4	43	85	11	136	25	21	25	29	1.99
14726224--14726262	12	3.2	12	88	0	60	5	38	15	41	1.69
14726248--14726304	21	2.7	21	91	0	87	3	38	21	36	1.70
14726248--14726316	21	3.3	21	87	4	68	5	39	18	36	1.75
14734080--14734123	21	2.1	21	83	8	54	38	36	0	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14734309--14734378	21	3.3	21	69	21	56	38	37	2	21	1.68
14734788--14735653	114	7.7	114	86	5	1217	24	20	21	34	1.97
14742585--14742651	9	7.2	9	80	12	82	38	29	8	22	1.85
14742954--14742987	4	9.0	4	87	12	54	47	0	0	52	1.00
14743128--14743233	3	35.0	3	98	1	203	66	0	0	33	0.99
14745030--14745174	38	3.8	38	83	0	191	28	14	19	37	1.91
14745030--14745174	76	1.9	76	89	0	227	28	14	19	37	1.91
14747095--14747210	17	6.9	17	79	2	126	43	25	10	21	1.84
14747095--14747210	50	2.3	51	83	1	135	43	25	10	21	1.84
14748064--14748115	25	2.1	25	92	0	86	26	26	1	44	1.65
14749338--14749377	20	2.0	20	85	0	53	37	22	12	27	1.90
14750419--14750448	13	2.3	13	100	0	60	30	6	40	23	1.80
14753269--14753316	19	2.5	19	89	0	78	35	31	6	27	1.82
14753269--14753323	19	2.9	19	86	0	74	40	30	5	23	1.77
14755246--14755328	30	2.8	30	83	3	87	48	8	10	32	1.68
14755272--14755331	30	2.0	30	93	3	102	41	5	13	40	1.66
14761742--14761776	17	2.1	17	94	0	61	34	8	17	40	1.80
14764504--14764630	9	14.1	9	83	3	139	38	40	6	14	1.71
14766392--14766428	16	2.4	16	86	8	51	54	8	2	35	1.44
14766502--14766536	2	17.5	2	100	0	70	51	0	48	0	1.00
14767514--14767554	20	2.0	20	86	9	57	19	0	4	75	0.98
14775396--14775442	22	2.1	22	100	0	94	34	10	29	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14786138--14786167	7	4.3	7	100	0	60	40	0	43	16	1.48
14786449--14786478	7	4.3	7	100	0	60	40	0	43	16	1.48
14786029--14786651	311	2.0	312	99	0	1239	31	8	21	38	1.83
14796128--14796177	23	2.1	24	82	10	59	34	2	0	64	1.05
14809751--14809793	19	2.3	19	88	4	61	74	6	2	16	1.14
14811412--14811538	43	2.9	45	70	4	114	18	25	26	28	1.98
14811038--14811444	133	3.1	133	93	1	665	27	23	20	28	1.99
14812748--14812778	14	2.3	14	94	5	55	12	19	0	67	1.22
14817538--14817579	19	2.3	19	87	4	59	76	7	2	14	1.10
14823939--14823973	15	2.4	15	90	4	54	48	0	8	42	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163