genome.fa.s4.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  128  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41067978--41068330	113	3.1	113	85	2	442	22	22	24	29	1.99
41069191--41069328	7	19.6	7	75	1	114	7	0	44	47	1.30
41069170--41069303	63	2.1	64	91	1	216	8	0	41	50	1.34
41069254--41069323	29	2.5	28	83	6	88	5	0	48	45	1.26
41069557--41069607	26	2.0	26	92	0	84	35	5	13	45	1.68
41070336--41070379	19	2.3	19	84	0	61	31	43	2	22	1.66
41070886--41070929	22	2.0	21	82	4	52	50	0	22	27	1.50
41072456--41072645	16	11.6	16	72	12	84	50	18	3	27	1.63
41072510--41072564	25	2.2	25	93	0	92	49	18	3	29	1.64
41072518--41072571	25	2.2	25	82	0	63	53	16	1	27	1.53
41072516--41072605	41	2.2	41	89	0	135	48	18	2	30	1.60
41072557--41072630	25	3.0	24	90	4	103	47	18	2	31	1.63
41072474--41072697	66	3.4	66	90	3	308	48	18	4	29	1.66
41072582--41072698	41	2.9	41	79	5	130	46	18	3	31	1.66
41072584--41072637	25	2.2	25	86	0	72	51	16	1	29	1.55
41072591--41072697	25	4.3	25	75	4	92	46	18	3	30	1.67
41075798--41075834	13	2.8	13	91	0	56	40	8	2	48	1.47
41077082--41077207	43	2.9	43	80	12	148	29	23	20	26	1.99
41087516--41087544	1	29.0	1	100	0	58	100	0	0	0	0.00
41090304--41090333	3	10.0	3	100	0	60	0	66	0	33	0.92
41095957--41096057	3	33.7	3	100	0	202	33	0	0	66	0.92
41102397--41102663	108	2.4	110	80	4	272	26	22	14	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41104427--41104579	25	6.2	25	72	8	91	20	27	19	32	1.97
41104469--41104532	24	2.6	24	73	11	58	18	26	21	32	1.97
41104438--41104579	49	2.9	49	75	5	126	20	27	20	31	1.97
41108637--41108666	14	2.1	15	93	6	53	90	6	3	0	0.56
41113279--41113306	2	14.0	2	100	0	56	50	0	0	50	1.00
41116530--41116611	42	2.0	42	85	4	112	15	30	26	26	1.96
41117247--41117289	23	1.9	23	85	4	61	76	2	18	2	1.00
41117958--41118023	33	2.0	33	97	2	125	53	21	12	13	1.72
41117960--41118023	32	2.0	32	96	3	112	54	21	10	12	1.68
41120762--41120787	3	8.7	3	100	0	52	69	0	0	30	0.89
41120947--41120995	22	2.2	21	82	13	55	53	6	8	32	1.55
41120947--41120997	24	2.2	22	82	6	57	52	5	7	33	1.54
41121497--41121554	22	2.6	22	81	7	64	41	17	5	36	1.72
41121533--41121587	21	2.7	21	88	5	87	34	14	10	40	1.81
41128440--41128524	27	3.3	26	83	8	104	14	20	40	25	1.90
41128605--41128651	18	2.5	20	79	10	62	63	2	34	0	1.06
41128601--41128654	22	2.4	23	84	12	76	64	1	33	0	1.04
41129214--41129257	3	15.3	3	86	9	65	0	36	0	63	0.95
41129210--41129258	14	3.6	14	89	10	75	0	36	0	63	0.95
41129214--41129257	20	2.2	20	95	0	79	0	36	0	63	0.95
41129216--41129261	14	3.2	15	93	6	78	0	39	0	60	0.97
41129220--41129269	14	3.6	13	86	10	64	0	38	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41129394--41129459	27	2.4	27	94	0	123	10	39	22	27	1.87
41137782--41137865	30	2.9	28	76	15	80	48	0	1	50	1.08
41137782--41137865	29	2.8	30	79	12	93	48	0	1	50	1.08
41141053--41141101	23	2.1	24	92	3	82	55	2	0	42	1.11
41141257--41141287	16	1.9	16	100	0	62	32	29	0	38	1.57
41144716--41144936	109	2.0	109	87	1	318	32	15	10	41	1.82
41146936--41147010	28	2.7	28	79	8	73	56	2	14	26	1.52
41153102--41153322	43	5.2	42	84	4	273	20	17	33	28	1.95
41153387--41153429	22	2.0	22	95	0	77	41	27	20	9	1.83
41155780--41155861	38	2.1	40	84	6	105	26	8	20	43	1.80
41161799--41161846	26	1.9	24	90	0	60	37	25	22	14	1.92
41162061--41162272	27	7.9	27	85	6	268	18	20	19	41	1.91
41164267--41164331	32	2.0	32	82	11	80	30	15	4	49	1.65
41168367--41168415	25	2.0	25	91	0	80	38	28	10	22	1.87
41169918--41169984	25	2.7	25	85	0	98	31	16	29	22	1.96
41179339--41179383	23	1.9	24	90	4	74	62	6	4	26	1.39
41179660--41179691	2	16.0	2	93	0	55	50	3	0	46	1.17
41184321--41184437	42	2.8	41	81	3	135	37	18	16	27	1.92
41184768--41184835	21	3.3	20	80	12	75	5	42	17	33	1.74
41184798--41184978	99	1.8	99	92	0	299	11	32	18	37	1.87
41221058--41221351	117	2.6	112	85	8	414	26	17	16	40	1.90
41221860--41221951	30	2.9	31	75	9	89	46	1	0	52	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41227365--41227410	17	2.7	18	78	18	53	45	0	4	50	1.21
41235439--41235520	25	3.6	24	70	21	77	45	6	23	25	1.76
41235463--41235497	18	1.9	18	94	0	61	40	5	25	28	1.78
41235439--41235521	43	1.9	43	92	0	139	44	6	24	25	1.76
41235481--41235546	25	2.7	25	80	2	80	42	6	25	25	1.78
41236575--41236696	59	2.0	60	98	1	237	24	30	21	23	1.99
41236990--41237158	23	7.3	22	70	19	85	40	17	14	28	1.88
41236959--41237172	46	4.6	47	80	6	229	39	17	14	29	1.88
41236960--41237172	93	2.3	93	90	2	320	39	17	14	29	1.88
41241700--41241741	22	1.9	22	85	0	57	40	16	2	40	1.62
41242486--41242529	23	2.0	23	86	4	63	38	4	0	56	1.20
41246902--41247006	42	2.5	42	82	1	120	23	17	28	30	1.97
41268224--41268362	46	3.0	46	86	6	192	35	7	24	31	1.84
41285103--41285148	18	2.5	18	96	3	83	45	15	21	17	1.85
41291504--41291529	11	2.4	11	100	0	52	42	11	0	46	1.40
41292754--41292780	13	2.1	13	100	0	54	40	22	7	29	1.81
41294444--41294481	19	2.0	20	89	5	60	31	7	15	44	1.75
41296352--41296556	48	4.2	49	82	4	245	23	25	17	33	1.96
41296450--41296812	200	1.8	199	85	4	507	22	22	17	37	1.94
41298473--41298510	6	6.3	6	100	0	76	50	0	15	34	1.45
41303612--41303696	9	9.4	9	87	5	118	41	23	10	24	1.86
41303799--41303852	18	2.9	18	83	2	63	12	1	44	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41312767--41313020	125	2.0	125	92	0	420	32	18	12	36	1.89
41314548--41314587	21	2.0	20	90	5	62	30	0	5	65	1.14
41315028--41315165	59	2.3	57	79	11	143	33	15	9	42	1.79
41330231--41330278	25	1.9	25	100	0	96	39	14	16	29	1.88
41334918--41334993	8	9.1	8	71	21	50	61	0	2	35	1.10
41334917--41334993	18	4.6	17	71	28	58	61	0	2	36	1.10
41334953--41334995	20	2.2	19	87	4	59	67	0	4	27	1.10
41340453--41340542	46	2.0	46	90	0	144	12	24	16	46	1.81
41349042--41349098	24	2.4	24	85	5	71	47	10	5	36	1.61
41349054--41349105	24	2.2	24	85	0	68	50	7	3	38	1.50
41349406--41349481	38	2.0	38	97	0	143	30	15	13	40	1.86
41353501--41353552	24	2.2	24	89	0	77	50	9	3	36	1.54
41355228--41355393	91	1.8	91	84	2	226	37	20	10	31	1.86
41356060--41356131	37	1.9	38	82	2	92	34	2	2	59	1.26
41356093--41356226	44	3.0	43	72	9	108	37	3	1	57	1.26
41356231--41356430	90	2.2	89	81	4	249	30	8	22	39	1.84
41362944--41363041	42	2.3	42	92	1	169	31	13	20	34	1.91
41365971--41366011	20	2.0	22	85	9	59	56	9	0	34	1.32
41378597--41378742	42	3.5	42	79	6	152	17	23	15	42	1.88
41378591--41378748	84	1.9	84	85	2	219	18	23	15	42	1.89
41380376--41380482	45	2.4	45	79	6	110	18	25	13	42	1.86
41381241--41381309	34	2.0	34	100	0	138	33	11	31	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41390238--41390292	29	1.9	29	88	3	85	61	0	3	34	1.13
41390317--41390349	10	3.3	10	91	8	50	54	0	6	39	1.25
41390322--41390354	10	3.3	10	91	8	50	45	0	3	51	1.16
41402419--41402503	29	3.0	27	68	11	71	42	15	22	20	1.89
41406346--41406402	28	2.0	28	96	0	105	49	0	19	31	1.49
41412269--41412312	18	2.4	18	88	7	63	52	0	0	47	1.00
41419060--41419102	22	1.9	23	85	4	61	60	4	2	32	1.30
41423146--41423176	16	2.0	15	93	6	53	90	0	9	0	0.46
41432900--41432936	2	18.5	2	100	0	74	0	48	0	51	1.00
41468720--41468753	15	2.3	15	95	5	61	17	14	0	67	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163