genome.fa.s4.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  101  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32670390--32670418	4	7.5	4	92	7	51	48	0	0	51	1.00
32670657--32670701	22	2.0	22	91	0	72	31	22	11	35	1.89
32680262--32680306	21	2.1	21	91	0	72	22	8	22	46	1.79
32680798--32680828	13	2.4	13	94	0	53	51	41	6	0	1.27
32681900--32681929	3	9.7	3	92	7	51	30	0	0	70	0.88
32681876--32681941	16	4.1	15	76	18	62	30	4	1	63	1.23
32681900--32681941	19	2.2	19	87	8	59	30	2	0	66	1.04
32685735--32685771	17	2.1	18	90	5	58	29	24	0	45	1.53
32688541--32688849	85	3.6	85	94	1	539	30	21	23	24	1.99
32693337--32693406	35	2.0	35	100	0	140	34	5	31	28	1.81
32696794--32696891	48	2.0	49	96	4	180	19	26	33	20	1.96
32716193--32716240	22	2.2	23	85	7	64	52	0	12	35	1.40
32716838--32716913	40	1.9	40	83	5	100	28	25	30	15	1.96
32716991--32717308	41	7.8	41	77	5	304	16	24	22	35	1.95
32716991--32717333	82	4.2	82	82	4	354	16	24	22	36	1.94
32718783--32718811	10	2.9	10	100	0	58	41	0	17	41	1.49
32718881--32718932	27	1.9	27	84	0	68	42	0	9	48	1.36
32719823--32719849	11	2.5	11	100	0	54	25	18	0	55	1.43
32721093--32721257	65	2.5	64	83	7	190	38	18	28	13	1.90
32721117--32721257	66	2.2	65	86	8	189	38	17	29	14	1.89
32721613--32721957	43	8.0	42	88	4	404	24	22	23	29	1.99
32721731--32722024	129	2.3	129	79	4	299	26	21	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32730124--32730177	23	2.3	24	83	3	65	50	3	1	44	1.30
32744271--32744364	33	2.8	34	79	9	93	32	14	24	27	1.95
32744307--32744383	33	2.3	32	78	6	82	33	18	23	24	1.96
32752810--32752844	17	2.1	17	88	0	52	42	14	2	40	1.60
32754379--32754477	47	2.1	46	81	7	110	24	17	29	29	1.97
32754408--32754514	47	2.2	46	82	9	126	22	15	29	31	1.95
32755034--32755129	46	2.1	46	98	0	183	30	25	17	27	1.97
32757457--32757505	17	2.9	18	80	14	52	55	4	0	40	1.19
32761972--32762019	24	2.0	25	83	4	62	25	8	10	56	1.61
32765227--32765469	30	8.2	30	98	1	463	39	9	0	51	1.34
32770243--32770293	25	2.0	26	84	3	68	37	21	3	37	1.72
32771470--32771520	25	2.0	26	84	3	68	37	21	3	37	1.72
32772705--32772738	8	4.0	8	85	14	50	58	0	5	35	1.22
32772726--32772767	23	1.9	23	90	9	70	64	0	0	35	0.94
32775213--32775275	26	2.4	26	81	0	81	20	14	30	34	1.92
32784673--32784745	25	3.0	25	82	6	96	31	19	24	24	1.98
32784672--32784757	25	3.5	24	75	10	93	31	18	24	25	1.98
32790367--32790397	2	15.5	2	93	0	53	45	3	51	0	1.17
32797082--32797111	14	2.1	15	93	6	53	30	13	0	56	1.37
32797944--32797986	14	3.2	13	77	9	50	51	0	0	48	1.00
32797941--32797981	13	3.1	14	79	13	59	51	0	0	48	1.00
32800022--32800056	18	1.9	18	88	0	52	62	0	2	34	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32800031--32800066	18	2.0	18	88	0	54	58	2	2	36	1.27
32802331--32802357	9	3.0	9	100	0	54	33	11	33	22	1.89
32805118--32805147	16	1.9	16	93	6	53	23	0	10	66	1.21
32807368--32807461	31	3.1	31	96	3	181	35	12	29	22	1.91
32807369--32807461	30	3.1	30	98	1	177	35	12	29	22	1.91
32807798--32807852	27	2.0	27	100	0	110	38	10	18	32	1.85
32808050--32808219	77	2.2	78	95	1	306	31	1	15	50	1.55
32813050--32813094	23	2.0	23	95	0	81	46	4	15	33	1.66
32821308--32821339	6	5.3	6	100	0	64	50	0	0	50	1.00
32821679--32821729	24	2.2	24	89	6	79	49	1	1	47	1.24
32821750--32821802	23	2.3	23	87	6	72	49	1	5	43	1.37
32825095--32825137	22	2.0	22	85	0	59	6	20	13	58	1.59
32825101--32825147	22	2.1	22	84	0	58	8	17	17	57	1.63
32825743--32825780	19	2.0	19	100	0	76	31	15	26	26	1.96
32826814--32826850	3	12.3	3	100	0	74	0	35	0	64	0.94
32828780--32828842	30	2.1	31	85	8	85	30	0	36	33	1.58
32831225--32831287	30	2.1	30	87	0	90	17	26	23	31	1.97
32833442--32833554	42	2.7	43	82	12	151	27	27	22	23	1.99
32834426--32834476	25	2.1	24	82	17	61	39	15	0	45	1.47
32836170--32836345	26	6.8	26	82	1	176	34	26	17	22	1.96
32836169--32836345	52	3.4	52	85	4	207	33	25	17	22	1.96
32843304--32843334	16	1.9	16	93	0	53	19	12	3	64	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32844277--32844307	9	3.4	9	90	0	53	25	12	22	38	1.90
32844359--32844388	9	3.3	9	90	0	51	46	13	10	30	1.75
32844843--32844913	18	3.9	18	70	3	52	42	2	0	54	1.14
32855262--32855286	4	6.2	4	100	0	50	76	0	0	24	0.80
32860849--32860897	6	7.8	6	84	6	62	42	16	20	20	1.89
32860881--32861047	39	4.2	39	82	5	174	40	20	18	20	1.92
32860877--32861020	45	3.3	44	80	11	181	41	19	18	20	1.90
32864737--32864832	49	1.9	51	83	12	128	33	27	13	26	1.93
32871536--32871602	31	2.2	31	91	0	107	43	7	13	35	1.72
32871857--32872185	164	2.0	164	96	0	604	25	13	26	34	1.93
32872243--32872314	35	2.1	35	83	0	90	19	12	30	37	1.89
32892175--32892359	50	3.7	50	86	0	262	27	23	29	20	1.98
32897025--32897076	14	3.8	14	84	5	61	55	1	13	28	1.49
32897050--32897076	13	2.1	13	100	0	54	51	0	11	37	1.37
32897083--32897235	47	3.3	47	77	14	201	51	13	3	31	1.58
32897083--32897283	90	2.2	90	99	0	395	50	13	2	32	1.56
32897130--32897278	43	3.4	43	77	14	185	50	14	2	32	1.55
32905958--32906004	24	2.0	24	83	8	60	42	2	8	46	1.46
32906109--32906150	18	2.3	18	83	0	57	26	4	9	59	1.48
32909440--32909531	25	3.6	25	74	9	89	32	21	28	17	1.96
32915769--32915819	20	2.5	21	78	9	61	31	1	0	66	1.03
32915749--32915805	20	2.9	18	75	14	51	36	5	0	57	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32915771--32915833	29	2.1	31	88	5	94	31	1	0	66	1.01
32915773--32915843	29	2.4	29	79	9	74	33	2	0	63	1.09
32926505--32926576	19	3.8	19	68	25	53	59	1	2	36	1.20
32926592--32926624	15	2.2	15	89	10	50	63	0	3	33	1.10
32926590--32926645	18	3.3	17	73	14	53	64	1	1	32	1.14
32926601--32926637	18	2.1	18	89	0	56	67	0	0	32	0.91
32930890--32930937	24	1.9	26	87	8	73	39	37	8	14	1.76
32932115--32932788	110	6.1	110	89	3	1014	31	17	18	33	1.94
32932131--32932785	222	3.0	223	93	1	1104	30	17	18	33	1.94
32932115--32932788	332	2.0	330	89	2	1023	31	17	18	33	1.94
32936090--32936124	2	17.5	2	100	0	70	51	0	0	48	1.00
32939457--32939503	21	2.2	21	100	0	94	21	10	31	36	1.88
32943673--32943731	31	1.9	31	96	0	109	28	15	15	40	1.87
32947462--32947491	12	2.6	11	90	10	51	90	10	0	0	0.47
32953405--32953445	2	20.5	2	100	0	82	51	0	0	48	1.00
32955556--32955608	21	2.5	22	84	9	65	22	18	20	37	1.94
32963368--32963499	41	3.2	41	85	5	178	35	18	25	20	1.95
32963397--32963461	21	3.2	20	65	18	53	30	16	32	20	1.95
32969048--32969130	28	3.0	28	92	0	139	27	21	25	25	1.99
32969238--32969313	26	3.0	26	90	1	118	38	22	23	15	1.93
32969276--32969341	26	2.5	27	82	4	73	37	21	21	19	1.94
32969493--32969780	81	3.5	80	84	7	359	17	18	21	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32969493--32969780	27	10.7	27	86	3	325	17	18	21	42	1.89
32976922--32976989	33	2.1	33	88	0	100	14	25	17	42	1.87
32984877--32984927	26	1.9	26	84	11	68	50	15	13	19	1.77
32990371--32990470	26	3.8	26	77	2	85	22	23	18	37	1.94
32990559--32990646	30	2.9	30	78	6	97	22	26	21	29	1.99
32993144--32993289	27	5.4	28	83	4	149	41	16	17	23	1.89
32993144--32993289	54	2.7	54	78	4	177	41	16	17	23	1.89
32993480--32993576	26	3.7	26	72	5	88	22	20	17	39	1.93
32993688--32993775	30	2.9	30	81	0	113	22	27	22	27	1.99
32995798--32995840	18	2.4	18	92	0	68	20	27	9	41	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163