genome.fa.s4.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  48  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15501866--15501900	17	2.1	16	89	5	52	71	0	8	20	1.11
15502786--15502848	18	3.5	18	84	4	83	66	1	22	9	1.29
15502841--15502886	12	3.8	12	88	0	56	67	2	19	10	1.31
15502784--15502886	18	5.7	18	71	11	59	66	1	20	10	1.31
15502852--15502890	12	3.2	12	92	0	60	64	2	23	10	1.37
15507503--15507565	24	2.6	24	85	5	74	15	38	7	38	1.77
15509275--15509385	20	5.4	20	97	2	204	14	0	5	80	0.89
15514393--15514488	30	3.2	30	90	0	156	16	44	16	21	1.86
15521997--15522111	55	2.1	56	91	4	189	50	8	1	39	1.44
15529246--15529276	2	15.5	2	93	0	53	48	3	0	48	1.17
15530771--15530800	2	15.0	2	92	0	51	46	0	0	53	1.00
15531184--15531223	14	3.0	13	89	7	62	50	0	0	50	1.00
15531985--15533637	826	2.0	827	99	0	3299	42	13	10	33	1.79
15534695--15534748	19	2.8	19	94	0	90	37	20	9	33	1.84
15535121--15535287	44	3.8	44	92	0	262	30	23	13	32	1.93
15535288--15535757	88	5.3	88	91	0	751	25	27	22	24	2.00
15535751--15536158	88	4.6	88	94	1	701	23	27	23	25	2.00
15535356--15536153	396	2.0	395	91	1	1276	24	27	23	24	2.00
15535532--15535977	220	2.0	219	91	1	714	23	28	22	25	2.00
15535444--15536065	308	2.0	307	93	0	1046	23	28	23	24	2.00
15538274--15538501	45	5.2	45	69	6	196	22	27	23	26	2.00
15538301--15538532	44	5.3	43	69	8	180	25	28	24	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15538301--15538544	43	5.6	42	67	8	155	24	27	24	23	2.00
15538260--15538623	88	4.1	88	91	1	552	24	26	24	24	2.00
15539923--15539955	14	2.3	15	89	5	50	30	33	9	27	1.88
15550795--15550859	34	1.9	34	87	3	96	32	10	13	43	1.79
15550809--15550847	19	2.1	19	85	0	51	28	12	12	46	1.79
15565303--15565358	21	2.8	19	82	10	76	37	19	8	33	1.83
15584010--15584066	27	2.1	27	96	0	105	40	7	22	29	1.80
15586092--15586157	23	2.9	22	80	8	78	21	27	18	33	1.96
15586643--15586667	11	2.3	11	100	0	50	60	0	24	16	1.36
15586884--15586914	12	2.6	12	100	0	62	32	22	19	25	1.97
15593098--15593199	11	9.8	11	65	19	58	55	0	13	29	1.45
15593103--15593224	29	4.4	29	73	18	125	56	0	13	29	1.43
15593151--15593200	23	2.1	24	88	3	75	58	0	12	30	1.34
15593253--15593319	21	3.0	21	76	6	62	65	2	10	20	1.36
15593315--15593396	12	6.9	11	75	16	67	53	1	20	24	1.53
15593554--15593616	28	2.3	27	83	2	72	57	0	15	26	1.39
15593581--15593648	21	3.3	21	84	10	79	63	1	14	20	1.38
15593692--15593731	19	2.1	19	85	4	53	72	0	5	22	1.04
15593720--15593799	28	2.9	28	83	7	117	53	1	13	31	1.48
15593752--15593837	39	2.2	39	89	6	129	50	0	16	33	1.46
15593808--15593859	17	2.9	17	74	25	54	55	0	13	30	1.38
15593895--15593948	20	2.6	21	76	5	65	61	0	12	25	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15593943--15593994	5	9.6	5	84	12	59	59	0	19	21	1.38
15593943--15593996	11	4.9	11	82	6	65	59	0	18	22	1.38
15595274--15595444	57	3.0	57	100	0	342	35	17	10	36	1.84
15596308--15596396	25	3.6	25	83	4	110	38	13	23	24	1.91
15596308--15596396	24	3.6	24	81	4	106	38	13	23	24	1.91
15599496--15599623	19	6.8	17	68	27	57	33	3	1	61	1.21
15599504--15599605	19	5.3	19	64	23	61	33	1	1	62	1.17
15599494--15599619	38	3.2	41	70	19	140	34	3	1	60	1.22
15599532--15599576	21	2.0	23	87	8	67	37	0	4	57	1.19
15599474--15599633	77	2.1	77	97	2	304	35	3	2	59	1.27
15599748--15600100	90	3.9	90	93	0	582	50	16	7	24	1.71
15599729--15600186	180	2.5	179	83	4	478	52	15	6	24	1.67
15604324--15604358	12	2.8	13	82	8	54	77	0	5	17	0.96
15604618--15604676	27	2.2	26	81	3	73	30	10	5	54	1.56
15608895--15609033	46	3.0	46	91	0	224	35	8	25	29	1.86
15613359--15613403	21	2.1	21	91	0	72	35	22	22	20	1.96
15614386--15614458	33	2.2	33	77	0	83	36	16	27	19	1.93
15620185--15620466	141	2.0	141	89	1	431	42	14	20	23	1.88
15624590--15624614	13	1.9	13	100	0	50	64	16	8	12	1.49
15624640--15624696	27	2.1	27	87	6	80	31	21	29	17	1.96
15624649--15624705	27	2.1	27	90	0	87	33	22	26	17	1.96
15624664--15624748	42	2.0	42	93	0	143	27	21	30	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15625643--15625699	27	2.1	27	90	0	87	17	26	22	33	1.96
15625643--15625708	27	2.4	27	85	5	80	18	28	22	30	1.97
15625750--15625813	28	2.4	26	86	5	83	50	1	12	35	1.50
15627217--15628553	228	5.9	227	87	1	1433	29	23	24	21	1.99
15627217--15628577	684	2.0	684	83	1	1699	29	24	24	21	1.99
15631290--15631326	15	2.5	15	90	0	56	51	5	13	29	1.63
15633976--15634018	18	2.4	18	76	0	50	67	4	9	18	1.36
15635763--15636440	338	2.0	338	100	0	1356	23	12	17	46	1.82
15642185--15642275	23	4.0	23	88	2	130	21	19	25	32	1.97
15646697--15646744	24	2.0	24	91	0	78	31	16	22	29	1.96
15649209--15649244	18	2.0	18	100	0	72	33	11	16	38	1.84
15649440--15649536	23	4.2	23	85	10	117	22	16	26	34	1.95
15649740--15649787	23	2.0	25	84	8	64	39	0	22	37	1.55
15652784--15652837	5	11.4	5	77	18	62	55	0	0	44	0.99
15652784--15652832	19	2.5	20	90	6	82	55	0	0	44	0.99
15652783--15652837	24	2.3	23	84	9	76	54	0	0	45	0.99
15670583--15670627	20	2.0	23	84	16	60	44	2	8	44	1.47
15676601--15676635	3	11.7	3	100	0	70	68	0	0	31	0.90
15682587--15682621	3	11.7	3	100	0	70	68	0	0	31	0.90
15683464--15683506	17	2.5	17	96	0	77	46	13	6	32	1.71
15684606--15684653	23	2.1	23	85	14	64	75	2	14	8	1.13
15688822--15688846	5	5.0	5	100	0	50	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15690128--15690169	15	2.5	16	81	18	50	45	0	4	50	1.23
15691050--15691094	23	1.9	24	86	4	65	35	0	22	42	1.54
15699807--15699864	29	2.0	30	93	3	100	13	6	22	56	1.61
15699820--15699939	38	3.2	38	90	3	172	15	5	24	55	1.62
15699858--15699917	29	2.0	29	83	3	75	15	5	25	55	1.60
15701220--15701252	15	2.2	15	94	0	57	39	15	3	42	1.62
15702022--15702069	25	1.9	25	100	0	96	39	4	8	47	1.53
15702140--15702173	16	2.1	16	94	0	59	50	5	2	41	1.42
15704630--15704708	40	2.0	40	85	9	108	18	27	30	22	1.98
15704757--15704799	22	2.0	22	90	4	70	16	0	34	48	1.46
15704969--15705379	124	3.3	124	87	1	592	32	16	20	30	1.95
15705824--15710298	248	18.0	248	99	0	8941	33	15	18	32	1.92
15713496--15713616	49	2.5	49	90	0	188	45	7	3	43	1.48
15717121--15717460	107	3.3	108	84	9	398	33	13	19	33	1.91
15717288--15717460	92	1.9	94	91	4	289	32	11	17	38	1.86
15717440--15717651	111	1.9	112	92	3	358	39	20	14	25	1.90
15717440--15717684	111	2.2	111	86	5	325	41	20	14	24	1.89
15720008--15720079	33	2.2	33	78	9	76	31	12	2	52	1.53
15722149--15722173	12	2.1	12	100	0	50	16	24	16	44	1.86
15721856--15722475	314	2.0	313	98	0	1186	31	14	20	33	1.93
15724061--15724100	18	2.2	18	86	0	53	30	12	10	47	1.74
15724753--15724808	28	2.0	28	89	6	87	53	10	0	35	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15724855--15724933	27	2.9	27	92	0	131	27	22	32	16	1.96
15725235--15725293	19	3.2	19	82	4	84	37	13	0	49	1.43
15725479--15725573	29	3.3	29	84	5	122	46	1	5	47	1.32
15725523--15725579	29	2.0	29	89	0	87	49	3	7	40	1.47
15725889--15725974	27	3.2	27	86	0	109	17	29	24	29	1.97
15726006--15726073	27	2.6	27	93	4	113	44	0	10	45	1.38
15726548--15726596	22	2.2	23	82	10	57	4	12	6	77	1.09
15727404--15727460	15	3.6	16	79	11	64	31	8	1	57	1.39
15727396--15727441	18	2.5	17	86	13	65	30	4	0	65	1.12
15727397--15727441	3	14.7	3	82	13	56	31	4	0	64	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163