genome.fa.s4.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  110  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35398843--35398884	15	2.7	16	82	14	52	45	0	2	52	1.13
35398834--35398875	15	2.9	15	82	10	52	47	0	0	52	1.00
35399098--35399135	16	2.4	16	86	0	58	28	34	2	34	1.71
35399179--35399213	14	2.6	13	91	8	61	68	0	0	31	0.90
35415611--35415672	31	2.0	31	90	3	99	48	16	17	17	1.82
35435618--35435797	85	2.1	86	96	2	337	36	6	4	52	1.48
35435783--35435821	19	2.0	20	90	5	62	41	5	2	51	1.38
35438109--35438199	5	18.6	5	69	13	64	60	0	39	0	0.97
35438109--35438194	34	2.6	34	89	5	133	60	0	39	0	0.97
35438120--35438180	24	2.4	25	83	8	70	59	0	40	0	0.98
35438109--35438199	13	7.2	13	67	21	52	60	0	39	0	0.97
35439424--35439503	25	3.2	25	78	3	81	42	17	20	20	1.89
35440354--35440386	6	5.3	6	96	3	57	0	15	0	84	0.61
35443324--35443458	25	5.6	25	78	10	115	16	21	21	40	1.91
35443387--35443448	22	2.8	21	83	9	70	16	27	20	35	1.94
35444805--35444842	19	2.0	19	100	0	76	36	10	21	31	1.87
35445773--35445811	3	13.0	3	100	0	78	66	0	0	33	0.92
35447722--35447780	31	1.9	31	92	0	100	13	40	20	25	1.89
35452560--35452602	6	7.7	6	89	5	56	53	2	0	44	1.13
35452864--35452906	21	2.0	22	90	4	70	39	0	2	58	1.11
35454045--35454098	15	3.6	14	75	24	56	31	0	3	64	1.11
35454046--35454110	31	2.1	31	88	5	96	26	1	4	67	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35461600--35461633	18	1.9	18	88	5	52	26	0	2	70	1.01
35461810--35461855	23	2.0	24	86	4	67	60	2	0	36	1.09
35463109--35463241	66	2.0	66	85	5	180	11	27	19	41	1.86
35469444--35469496	18	3.1	17	78	13	56	67	0	5	26	1.12
35469426--35469496	17	4.1	17	74	18	58	64	0	4	30	1.12
35469500--35469538	11	3.5	11	79	6	51	69	0	7	23	1.14
35470399--35470524	35	3.4	35	68	23	112	36	3	3	56	1.34
35470371--35470545	78	2.2	78	100	0	350	41	2	4	52	1.33
35472818--35472854	2	18.5	2	94	0	65	45	0	2	51	1.15
35475043--35475084	18	2.3	18	80	8	50	64	11	23	0	1.27
35483219--35483405	51	3.6	51	82	6	252	24	16	27	31	1.96
35483221--35483407	102	1.8	103	98	1	367	24	16	27	32	1.96
35483411--35483505	45	2.1	45	86	0	136	28	16	24	30	1.97
35487813--35487849	17	2.2	17	95	0	65	24	2	21	51	1.61
35489066--35489250	46	4.0	46	91	0	289	35	8	25	29	1.86
35494190--35494237	17	2.9	17	93	3	80	27	0	20	52	1.47
35495444--35495583	46	3.0	45	89	4	208	31	10	27	30	1.90
35496498--35496542	23	1.9	25	82	13	60	44	4	20	31	1.71
35510388--35510454	34	1.9	35	87	3	100	31	8	14	44	1.76
35511582--35511636	4	13.8	4	88	0	56	16	1	30	50	1.55
35516807--35516867	28	2.1	30	82	14	74	65	0	11	22	1.24
35516940--35516978	11	3.5	11	89	3	51	71	2	0	25	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35518934--35518968	17	2.0	18	88	5	54	65	14	8	11	1.46
35519790--35519848	18	3.3	18	72	9	57	37	0	6	55	1.26
35519768--35519832	25	2.5	25	73	14	60	38	0	3	58	1.14
35531487--35531609	22	5.4	22	64	21	74	34	2	25	37	1.69
35531482--35531622	46	3.1	46	100	0	282	34	2	23	40	1.67
35531509--35531587	24	3.4	24	67	19	76	34	1	24	40	1.63
35536847--35537085	120	2.0	120	97	0	451	41	16	17	25	1.90
35540924--35541117	37	5.2	37	91	1	282	41	28	11	18	1.85
35542257--35542318	22	2.8	22	80	0	79	37	22	20	19	1.95
35542662--35542759	27	3.7	27	74	10	85	32	10	17	39	1.83
35544218--35544249	17	2.0	17	88	11	50	62	15	21	0	1.32
35545265--35545365	46	2.2	46	89	1	150	21	18	16	42	1.89
35556670--35556787	40	3.0	40	100	0	236	36	10	15	38	1.81
35570038--35570166	42	3.1	42	80	0	141	44	17	23	15	1.86
35580077--35580116	20	2.0	20	100	0	80	45	10	15	30	1.78
35582056--35582101	19	2.4	20	82	10	60	26	4	2	67	1.21
35582170--35582194	11	2.3	11	100	0	50	16	8	0	76	1.02
35582176--35582250	28	2.7	27	83	6	96	29	1	0	69	0.97
35582201--35582256	9	6.3	9	74	10	53	23	0	0	76	0.78
35582176--35582252	27	2.8	27	84	5	100	28	1	0	70	0.96
35582237--35582262	7	3.7	7	100	0	52	11	0	0	88	0.52
35583358--35583432	20	3.8	20	78	7	71	32	32	6	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35588509--35588644	69	2.0	67	85	7	184	55	13	9	22	1.66
35590213--35590244	3	10.7	3	100	0	64	68	0	31	0	0.90
35591368--35591420	16	3.3	16	100	0	106	37	5	35	20	1.77
35591402--35591495	44	2.1	44	92	4	152	29	5	29	35	1.80
35591402--35591506	44	2.5	42	77	16	110	30	4	29	35	1.78
35593146--35593249	49	2.1	49	87	0	145	50	11	7	30	1.67
35596827--35596883	22	2.8	21	79	10	64	35	21	7	36	1.80
35600593--35600656	19	3.4	19	70	12	51	28	9	3	59	1.44
35600638--35600667	16	1.9	15	93	6	51	30	3	0	66	1.07
35605554--35605613	26	2.3	26	85	0	75	73	8	8	10	1.26
35607237--35607496	87	3.0	87	90	0	412	28	21	24	25	1.99
35607553--35607665	44	2.6	44	80	8	135	33	20	18	27	1.96
35607740--35608001	129	2.0	129	84	0	335	26	17	24	31	1.97
35609542--35609571	16	1.9	15	93	6	51	30	3	0	66	1.07
35609798--35609836	8	4.9	8	90	0	51	48	10	0	41	1.37
35609798--35609835	20	1.9	20	94	0	67	50	10	0	39	1.37
35632687--35632722	17	2.1	17	100	0	72	38	11	22	27	1.88
35637069--35637106	18	2.2	18	85	4	51	42	15	18	23	1.89
35639690--35639714	12	2.1	12	100	0	50	24	36	24	16	1.94
35639875--35639969	9	10.4	9	82	6	102	41	25	9	24	1.85
35642700--35642925	87	2.6	88	81	8	237	37	19	9	33	1.85
35643027--35643141	19	6.3	18	72	15	69	67	2	0	28	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35643027--35643130	9	11.6	9	74	14	81	68	2	0	27	1.10
35643347--35643407	20	3.0	20	80	11	70	29	4	1	63	1.24
35643554--35643740	91	2.1	89	84	6	234	34	10	18	36	1.85
35647528--35647667	33	4.1	34	68	9	97	30	25	14	30	1.95
35655915--35655959	22	2.0	22	95	0	81	46	20	8	24	1.78
35662022--35662238	78	2.8	77	92	2	346	27	16	30	25	1.96
35664907--35664951	22	2.0	22	95	0	81	46	20	8	24	1.78
35665961--35666005	22	2.0	22	95	0	81	46	20	8	24	1.78
35666535--35666585	25	2.0	24	85	14	68	23	0	3	72	1.01
35682656--35682687	16	2.0	16	93	0	55	25	3	0	71	1.00
35686291--35686399	45	2.6	43	80	12	129	33	4	29	32	1.78
35687373--35687401	13	2.2	13	100	0	58	55	10	27	6	1.59
35711735--35711875	38	4.0	38	76	17	158	58	9	28	4	1.48
35711780--35711891	28	3.6	28	70	25	100	60	8	28	2	1.39
35711745--35711891	66	2.2	66	96	0	267	61	8	27	2	1.38
35711750--35711912	66	2.6	61	85	9	245	57	9	29	3	1.46
35711854--35711898	23	2.0	23	90	0	72	60	6	31	2	1.35
35713441--35713506	21	3.1	23	68	25	56	48	1	4	45	1.32
35714142--35714180	20	2.0	20	89	0	60	28	7	0	64	1.21
35714148--35714217	29	2.4	28	76	9	70	35	2	1	60	1.21
35718411--35718461	11	4.6	11	73	9	50	60	7	11	19	1.55
35718477--35718519	22	2.0	22	85	0	59	72	11	6	9	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35718422--35718607	92	2.0	93	97	1	356	65	8	14	11	1.46
35718569--35718616	22	2.2	22	84	0	60	72	10	8	8	1.27
35719802--35719858	19	3.0	21	75	17	61	38	1	1	57	1.19
35720909--35720954	23	2.0	23	83	4	58	28	2	10	58	1.43
35729045--35729076	5	6.2	5	92	7	55	40	0	18	40	1.51
35729729--35729800	23	3.0	25	73	8	76	23	25	16	34	1.95
35730626--35730660	16	2.1	17	89	5	54	45	11	17	25	1.81
35732861--35732936	38	2.0	38	89	0	116	27	30	10	31	1.90
35741402--35741434	17	1.9	17	88	11	50	57	0	3	39	1.14
35741449--35741483	18	1.9	18	88	11	54	62	8	0	28	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163