genome.fa.s4.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  103  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33354113--33354364	43	5.9	43	93	1	407	20	19	32	27	1.97
33356628--33356658	9	3.4	9	90	0	53	25	12	22	38	1.90
33358887--33358925	19	2.1	19	86	13	55	53	2	2	41	1.28
33368887--33368929	21	2.0	23	86	9	63	34	13	6	44	1.72
33373714--33373753	20	2.0	21	90	5	64	20	30	20	30	1.97
33374986--33375010	13	1.9	13	100	0	50	8	0	24	68	1.16
33375036--33375183	75	2.0	75	98	0	287	33	10	19	36	1.87
33378010--33378253	45	5.4	45	96	0	443	34	18	21	25	1.96
33379041--33379334	149	2.0	147	84	6	380	43	5	17	34	1.71
33379368--33379414	5	9.4	5	100	0	94	40	0	0	59	0.97
33379440--33379480	16	2.6	15	85	11	55	73	4	17	4	1.19
33380421--33380495	26	2.9	26	84	4	71	17	24	24	34	1.96
33380474--33380615	24	5.9	24	69	8	83	19	25	21	33	1.97
33380474--33380613	72	1.9	73	82	7	178	19	25	22	33	1.97
33380571--33380706	24	5.6	23	68	15	69	19	25	20	34	1.96
33380447--33380626	72	2.5	72	75	8	175	18	25	21	34	1.96
33386301--33386420	44	2.7	44	83	7	129	44	23	21	10	1.84
33386301--33386410	22	5.0	22	75	4	105	44	23	20	10	1.83
33389207--33389423	108	2.0	109	99	0	427	35	5	8	51	1.55
33389453--33389491	13	3.1	13	85	7	53	33	0	10	56	1.33
33396195--33396219	1	25.0	1	100	0	50	0	100	0	0	0.00
33401817--33401842	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33401993--33402027	15	2.2	16	90	5	54	65	0	8	25	1.21
33416657--33416699	22	2.0	22	100	0	86	9	18	27	44	1.80
33421185--33421226	19	2.2	19	91	0	66	14	2	2	80	0.90
33421479--33421520	8	5.5	8	81	18	54	30	47	0	21	1.51
33421465--33421544	23	3.6	23	85	8	94	33	42	1	22	1.62
33421465--33421520	15	3.7	15	75	17	53	32	44	1	21	1.63
33421451--33421520	8	9.4	7	70	11	50	31	42	2	22	1.68
33421539--33421573	15	2.4	15	90	4	54	40	40	0	20	1.52
33422506--33422852	41	8.9	41	81	10	404	28	28	23	19	1.98
33422653--33422717	32	2.0	32	100	0	130	27	27	26	18	1.98
33422612--33422840	73	3.0	73	80	10	287	29	30	23	16	1.96
33422514--33422853	114	2.9	114	86	4	410	28	29	23	18	1.98
33422916--33423022	40	2.7	40	77	1	108	23	16	23	36	1.94
33423130--33423170	7	5.7	7	85	5	55	39	0	0	60	0.96
33430830--33430878	17	2.9	17	76	8	55	44	2	18	34	1.61
33435424--33435491	28	2.4	28	85	0	82	20	23	19	36	1.95
33439833--33439879	22	2.4	19	77	19	51	61	2	10	25	1.39
33445183--33445214	3	10.7	3	100	0	64	0	31	0	68	0.90
33445942--33446019	31	2.5	31	91	0	129	39	7	1	51	1.39
33446003--33446033	5	6.2	5	100	0	62	38	0	0	61	0.96
33445972--33446067	46	2.1	46	88	0	138	39	6	3	51	1.43
33458463--33458526	26	2.5	25	79	2	74	18	25	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33458488--33458551	23	2.7	23	82	4	74	15	25	23	35	1.94
33458488--33458582	48	2.0	49	83	10	124	17	24	23	34	1.96
33458590--33458651	25	2.5	25	75	0	61	25	27	14	32	1.95
33461265--33461306	20	2.1	21	87	12	63	16	16	4	61	1.50
33461953--33462022	25	2.8	25	82	0	86	34	22	20	22	1.97
33466880--33467072	43	4.5	43	86	1	271	34	25	13	25	1.93
33474072--33474172	40	2.5	41	85	6	125	30	12	16	39	1.87
33474302--33474349	24	2.0	24	83	0	60	22	16	25	35	1.95
33474263--33474386	63	2.0	63	86	0	176	25	19	25	29	1.98
33477983--33478010	10	2.8	10	100	0	56	60	0	10	28	1.30
33478552--33478608	11	5.6	10	77	10	53	42	0	8	49	1.34
33478549--33478608	30	2.0	30	93	0	102	41	0	10	48	1.37
33491155--33491215	24	2.5	25	83	5	79	16	27	16	39	1.90
33495604--33495690	43	2.0	43	97	0	165	48	4	20	26	1.69
33497995--33498019	5	5.0	5	100	0	50	20	0	40	40	1.52
33525079--33525132	20	2.8	20	80	8	67	66	1	1	29	1.12
33525079--33525145	18	3.6	19	76	15	68	64	1	1	32	1.12
33525082--33525146	27	2.3	27	82	10	69	64	1	1	32	1.12
33525079--33525146	10	7.3	9	72	18	59	63	1	1	33	1.13
33525334--33525367	10	3.4	10	87	0	50	38	2	0	58	1.13
33525345--33525429	34	2.4	36	82	3	102	28	4	2	64	1.26
33525379--33525430	9	5.8	8	80	19	50	26	1	1	69	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33525415--33525477	25	2.5	26	79	7	67	33	7	1	57	1.37
33526099--33526168	32	2.4	27	71	22	70	52	14	0	32	1.41
33526107--33526170	32	2.0	32	96	0	119	51	15	0	32	1.44
33526296--33526329	13	2.8	12	87	12	52	67	0	0	32	0.91
33532110--33532166	25	2.3	25	84	0	69	40	12	5	42	1.65
33532405--33532462	23	2.4	24	86	13	75	29	20	25	24	1.99
33532427--33532495	23	3.0	23	82	4	77	30	18	27	23	1.98
33536725--33536761	9	4.1	9	85	0	56	54	5	0	40	1.24
33542773--33542814	19	2.3	19	88	8	61	14	0	4	80	0.86
33542876--33543053	92	1.9	92	83	2	232	42	12	9	35	1.76
33544229--33544285	23	2.5	23	74	5	62	28	3	3	64	1.26
33545951--33546050	51	2.0	51	86	4	139	24	28	2	46	1.64
33546047--33546071	11	2.3	11	100	0	50	52	0	0	48	1.00
33547693--33547732	18	2.2	18	86	0	53	17	30	7	45	1.76
33548245--33548323	22	3.6	22	93	3	133	44	32	0	22	1.53
33548288--33548363	35	2.2	35	90	6	120	43	36	0	19	1.52
33551440--33552006	125	4.5	125	90	1	895	28	22	17	30	1.97
33551440--33552006	249	2.3	250	92	1	922	28	22	17	30	1.97
33553580--33553664	25	3.1	25	70	20	71	42	1	2	54	1.21
33555120--33555342	75	3.1	71	79	10	231	43	6	8	40	1.61
33555120--33555342	73	3.1	72	78	10	233	43	6	8	40	1.61
33555788--33555829	20	2.2	19	87	8	59	26	4	14	54	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33556749--33556782	6	5.7	6	89	0	50	58	0	29	11	1.33
33556930--33557003	26	2.9	26	91	2	123	39	9	18	32	1.83
33559906--33559989	37	2.2	37	85	6	105	30	23	17	27	1.97
33563182--33563230	26	1.9	25	83	4	62	53	10	0	36	1.35
33564348--33564425	23	3.2	23	83	12	95	52	2	1	43	1.23
33564605--33564641	14	2.8	13	88	8	56	43	5	13	37	1.67
33564900--33565012	35	3.3	35	86	2	165	18	22	17	41	1.90
33564905--33565006	34	3.0	34	88	1	150	20	22	17	39	1.93
33573180--33573234	27	2.0	28	82	3	67	7	20	0	72	1.07
33574353--33574437	9	9.4	9	92	0	125	43	24	8	23	1.81
33584065--33584111	25	1.9	25	82	4	60	31	2	12	53	1.51
33594411--33594455	20	2.2	20	92	0	72	13	33	26	26	1.93
33604987--33605153	25	6.6	25	71	22	68	20	28	17	32	1.96
33605048--33605142	24	3.9	23	75	15	84	20	30	18	30	1.96
33605088--33605193	24	4.3	24	77	4	77	18	28	18	33	1.95
33605281--33605306	13	2.0	13	100	0	52	53	15	15	15	1.73
33613180--33613204	12	2.1	12	100	0	50	24	36	24	16	1.94
33613365--33613428	9	7.4	9	75	19	57	40	28	10	20	1.86
33613567--33613596	13	2.3	13	94	0	51	20	0	40	40	1.52
33614207--33614260	7	7.7	7	95	0	99	0	57	0	42	0.98
33625969--33626022	27	2.0	27	100	0	108	14	37	18	29	1.91
33633718--33633762	9	5.3	9	81	10	51	55	28	0	15	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33634209--33634264	10	6.0	9	74	13	51	64	1	1	32	1.14
33634200--33634258	10	6.4	9	74	16	50	66	3	1	28	1.18
33634200--33634251	18	3.0	16	74	17	50	65	3	1	28	1.21
33636776--33636916	39	3.6	38	82	9	153	36	8	9	45	1.67
33640688--33640836	38	3.9	38	78	5	147	36	9	8	44	1.68
33640688--33640836	78	1.9	77	81	6	176	36	9	8	44	1.68
33646728--33646821	39	2.4	39	76	13	95	58	1	8	31	1.35
33646739--33646818	19	4.2	19	71	9	65	57	1	8	32	1.37
33646956--33647000	21	2.1	21	83	0	54	26	2	2	68	1.12
33647014--33647049	18	1.9	18	88	5	54	41	5	0	52	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163